Wall clock time and date at job start Tue Mar 31 2020 07:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.49077 * 2 1 4 4 O 1.21285 * 120.00336 * 252.96943 * 3 2 1 5 5 N 1.34780 * 119.99740 * 72.96712 * 3 2 1 6 6 C 1.46931 * 120.62954 * 183.29859 * 5 3 2 7 7 C 1.53619 * 108.54263 * 126.36879 * 6 5 3 8 8 C 1.53040 * 109.24165 * 54.86095 * 7 6 5 9 9 C 1.50705 * 109.44898 * 178.49855 * 8 7 6 10 10 H 1.07994 * 120.00034 * 120.06234 * 9 8 7 11 11 C 1.37872 * 119.99728 * 300.05743 * 9 8 7 12 12 N 1.31513 * 119.99971 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00239 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47254 * 89.99944 * 13 11 9 15 15 H 1.48502 * 109.47167 * 210.00035 * 13 11 9 16 16 H 1.48497 * 109.47082 * 329.99845 * 13 11 9 17 17 C 1.53044 * 109.53558 * 298.50816 * 8 7 6 18 18 C 1.46922 * 120.63431 * 3.57872 * 5 3 2 19 19 C 1.53090 * 109.48105 * 239.97143 * 2 1 3 20 20 C 1.53181 * 109.16277 * 182.41054 * 19 2 1 21 21 C 1.53177 * 109.03648 * 56.97706 * 20 19 2 22 22 C 1.53084 * 109.16507 * 303.02283 * 21 20 19 23 23 O 1.42905 * 109.47680 * 120.02561 * 2 1 3 24 24 H 1.09001 * 109.47330 * 299.97407 * 1 2 3 25 25 H 1.09003 * 109.46708 * 59.97057 * 1 2 3 26 26 H 1.09001 * 109.47066 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.58847 * 246.20675 * 6 5 3 28 28 H 1.09008 * 109.58441 * 6.62680 * 6 5 3 29 29 H 1.09002 * 109.63762 * 294.86696 * 7 6 5 30 30 H 1.09003 * 109.43197 * 174.72856 * 7 6 5 31 31 H 1.08997 * 109.46161 * 58.52663 * 8 7 6 32 32 H 0.97004 * 120.00517 * 180.02562 * 12 11 9 33 33 H 1.09003 * 109.49892 * 301.41617 * 17 8 7 34 34 H 1.08998 * 109.49714 * 181.31938 * 17 8 7 35 35 H 1.08993 * 109.58505 * 353.37833 * 18 5 3 36 36 H 1.09003 * 109.58536 * 113.79387 * 18 5 3 37 37 H 1.09004 * 109.52307 * 302.31265 * 19 2 1 38 38 H 1.09002 * 109.52366 * 62.44144 * 19 2 1 39 39 H 1.09000 * 109.54226 * 297.11546 * 20 19 2 40 40 H 1.08994 * 109.54505 * 176.84679 * 20 19 2 41 41 H 1.09001 * 109.52339 * 183.10907 * 21 20 19 42 42 H 1.09003 * 109.52011 * 62.92770 * 21 20 19 43 43 H 1.09004 * 109.48172 * 177.59114 * 22 21 20 44 44 H 1.08999 * 109.48151 * 297.62396 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0328 1.4206 0.0000 4 8 2.5252 1.8897 -1.0043 5 7 1.9353 2.1699 1.1161 6 6 2.3546 3.5781 1.1112 7 6 1.1914 4.4359 1.6317 8 6 0.7549 3.9153 3.0030 9 6 -0.3618 4.7764 3.5346 10 1 -1.3236 4.3377 3.7556 11 6 -0.1555 6.1242 3.7388 12 7 -1.1299 6.8756 4.2032 13 14 1.5079 6.8831 3.3560 14 1 1.5275 7.3470 1.9455 15 1 1.7454 8.0371 4.2600 16 1 2.5732 5.8685 3.5583 17 6 0.2661 2.4711 2.8702 18 6 1.4135 1.5925 2.3622 19 6 2.0406 -0.7223 -1.2495 20 6 3.5711 -0.7709 -1.2121 21 6 4.0176 -1.4601 0.0810 22 6 3.4307 -0.7093 1.2791 23 8 2.0065 -0.6742 1.1665 24 1 -0.3634 0.5134 0.8902 25 1 -0.3633 0.5143 -0.8898 26 1 -0.3633 -1.0277 -0.0005 27 1 3.2227 3.7032 1.7585 28 1 2.6074 3.8806 0.0950 29 1 0.3536 4.3775 0.9369 30 1 1.5173 5.4721 1.7229 31 1 1.5998 3.9508 3.6907 32 1 -0.9849 7.8240 4.3465 33 1 -0.5630 2.4311 2.1637 34 1 -0.0665 2.1087 3.8429 35 1 1.0453 0.5845 2.1718 36 1 2.2064 1.5589 3.1094 37 1 1.6443 -1.7375 -1.2709 38 1 1.7139 -0.1849 -2.1399 39 1 3.9690 0.2435 -1.2407 40 1 3.9392 -1.3327 -2.0705 41 1 5.1059 -1.4499 0.1422 42 1 3.6613 -2.4902 0.0865 43 1 3.7099 -1.2203 2.2005 44 1 3.8192 0.3089 1.2959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334771839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:34 Heat of formation + Delta-G solvation = -83.994929 kcal Electronic energy + Delta-G solvation = -24321.217500 eV Core-core repulsion = 21045.333908 eV Total energy + Delta-G solvation = -3275.883592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.10436 -38.38408 -37.03024 -34.09509 -33.26562 -33.02675 -31.40361 -30.48894 -27.90671 -26.66354 -24.53254 -23.72951 -22.94582 -22.06712 -21.06598 -19.68737 -18.27092 -17.48659 -16.81690 -16.28806 -15.79114 -15.18593 -14.96707 -14.52863 -14.36511 -14.32465 -13.83653 -13.46597 -13.16958 -12.98814 -12.76174 -12.56531 -12.40476 -12.29087 -12.10545 -12.00228 -11.78401 -11.75946 -11.16569 -10.97491 -10.90734 -10.71930 -10.67384 -10.18425 -10.06571 -9.86503 -9.73470 -9.50035 -9.10287 -8.88483 -8.55533 -8.17233 -6.09931 -4.09134 2.67669 3.20560 3.25140 3.34301 3.37524 3.57924 4.37759 4.43627 4.65075 4.68393 4.76734 4.80498 5.10602 5.20603 5.32217 5.39330 5.46925 5.53582 5.54689 5.65317 5.68621 5.72364 5.75182 5.78554 5.83337 5.90207 5.92903 5.96629 6.07345 6.08602 6.24949 6.26635 6.33422 6.59630 6.67191 6.78107 6.86828 6.98579 7.18892 7.47741 7.71395 7.75037 8.34518 8.49201 8.94073 9.52604 11.03385 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.005111 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.215855 B = 5477.031225 C = 5685.999539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.104 3.896 3 C 0.495 3.505 4 O -0.548 6.548 5 N -0.590 5.590 6 C 0.104 3.896 7 C -0.132 4.132 8 C 0.014 3.986 9 C -0.513 4.513 10 H 0.074 0.926 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.885 3.115 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.265 1.265 17 C -0.115 4.115 18 C 0.088 3.912 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.154 4.154 22 C 0.053 3.947 23 O -0.359 6.359 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.339 -16.873 -7.697 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.061 3.939 3 C 0.281 3.719 4 O -0.427 6.427 5 N -0.321 5.321 6 C -0.018 4.018 7 C -0.170 4.170 8 C -0.005 4.005 9 C -0.551 4.551 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.715 3.285 14 H -0.206 1.206 15 H -0.225 1.225 16 H -0.191 1.191 17 C -0.153 4.153 18 C -0.034 4.034 19 C -0.162 4.162 20 C -0.166 4.166 21 C -0.192 4.192 22 C -0.023 4.023 23 O -0.279 6.279 24 H 0.097 0.903 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.417 -16.515 -8.010 20.192 hybrid contribution 1.041 0.860 -0.258 1.375 sum 9.458 -15.655 -8.268 20.072 Atomic orbital electron populations 1.21928 0.90378 1.03766 1.04113 1.21741 0.96470 0.88268 0.87378 1.21111 0.79092 0.88503 0.83172 1.90633 1.45307 1.73765 1.32958 1.48203 1.61672 1.11490 1.10774 1.21884 0.97811 0.80255 1.01892 1.22426 0.96483 0.97665 1.00426 1.19138 0.97121 0.92454 0.91769 1.21042 0.98473 0.92743 1.42804 0.90824 1.25028 0.96365 0.97262 0.94564 1.69896 1.32073 1.06273 1.45675 0.86884 0.85407 0.78676 0.77486 1.20558 1.22477 1.19053 1.21861 0.96377 0.96481 1.00583 1.22403 0.97300 0.98894 0.84784 1.21921 0.96468 1.00552 0.97272 1.21688 0.95553 1.02210 0.97191 1.22178 1.00958 1.00317 0.95723 1.22664 0.80879 1.00110 0.98645 1.87977 1.21370 1.76890 1.41622 0.90296 0.90505 0.90605 0.92223 0.90102 0.91741 0.92573 0.95507 0.92666 0.92336 0.91319 0.87481 0.92175 0.90648 0.90004 0.90285 0.91597 0.91038 0.91100 0.88393 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.56 37.16 0.32 -1.38 16 2 C 0.10 1.35 0.67 -91.73 -0.06 1.29 16 3 C 0.49 8.04 4.74 -10.99 -0.05 7.98 16 4 O -0.55 -10.23 13.81 5.55 0.08 -10.15 16 5 N -0.59 -9.95 2.84 -172.51 -0.49 -10.44 16 6 C 0.10 1.92 6.45 -3.49 -0.02 1.90 16 7 C -0.13 -2.82 4.86 -26.39 -0.13 -2.95 16 8 C 0.01 0.32 1.65 -91.73 -0.15 0.17 16 9 C -0.51 -14.01 9.14 -34.44 -0.31 -14.32 16 10 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 11 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 12 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 13 Si 0.88 21.68 24.38 -169.99 -4.14 17.54 16 14 H -0.28 -6.69 6.86 56.52 0.39 -6.31 16 15 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 16 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 17 C -0.11 -2.13 5.23 -26.61 -0.14 -2.27 16 18 C 0.09 1.38 4.85 -3.72 -0.02 1.36 16 19 C -0.12 -1.43 4.55 -26.59 -0.12 -1.55 16 20 C -0.13 -1.44 5.73 -26.55 -0.15 -1.60 16 21 C -0.15 -1.49 6.14 -26.60 -0.16 -1.66 16 22 C 0.05 0.59 6.29 37.20 0.23 0.82 16 23 O -0.36 -4.46 7.40 -35.23 -0.26 -4.72 16 24 H 0.08 1.00 5.98 -51.93 -0.31 0.68 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 1.51 7.02 -51.92 -0.36 1.14 16 29 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.06 1.27 3.24 -51.93 -0.17 1.11 16 31 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.11 1.50 3.63 -51.93 -0.19 1.32 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 39 H 0.08 1.09 6.26 -51.93 -0.33 0.76 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 LS Contribution 319.07 15.07 4.81 4.81 Total: -1.00 -30.78 319.07 -7.27 -38.04 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.16 Total: 1.82 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.87 Total: -10.33 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.28 Total: -37.01 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.18 Total: -14.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.78 -7.27 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334771839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.952 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds