Wall clock time and date at job start Tue Mar 31 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.47158 * 120.98580 * 359.71708 * 13 11 10 15 15 C 1.52877 * 108.61058 * 230.53755 * 14 13 11 16 16 O 1.42971 * 109.30848 * 307.91827 * 15 14 13 17 17 C 1.42897 * 114.19060 * 62.35975 * 16 15 14 18 18 C 1.52957 * 109.56846 * 57.42608 * 17 16 15 19 19 C 1.52998 * 109.50325 * 60.40946 * 18 17 16 20 20 C 1.53012 * 109.46537 * 59.93907 * 19 18 17 21 21 C 1.52993 * 109.45118 * 299.94385 * 20 19 18 22 22 C 1.52942 * 109.58076 * 177.67283 * 17 16 15 23 23 C 1.47157 * 120.99056 * 180.02562 * 13 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.08989 * 109.68208 * 350.32297 * 14 13 11 30 30 H 1.09000 * 109.67773 * 110.87922 * 14 13 11 31 31 H 1.09002 * 109.57919 * 187.90024 * 15 14 13 32 32 H 1.09001 * 109.36261 * 67.79895 * 15 14 13 33 33 H 1.08997 * 109.46387 * 180.41896 * 18 17 16 34 34 H 1.09000 * 109.46302 * 300.39520 * 18 17 16 35 35 H 1.08996 * 109.47392 * 299.93905 * 19 18 17 36 36 H 1.09001 * 109.47377 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47131 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47378 * 59.94164 * 20 19 18 39 39 H 1.09001 * 109.47446 * 300.04901 * 21 20 19 40 40 H 1.09007 * 109.46908 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.46790 * 59.60056 * 22 17 16 42 42 H 1.09004 * 109.46456 * 179.58302 * 22 17 16 43 43 H 1.09005 * 109.67851 * 249.20416 * 23 13 11 44 44 H 1.08998 * 109.68229 * 9.75317 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1654 -6.1344 0.0018 14 6 3.6368 -6.1599 -0.0043 15 6 4.1040 -7.0923 -1.1221 16 8 3.4476 -8.3555 -0.9892 17 6 2.0260 -8.2933 -1.1196 18 6 1.6619 -7.6831 -2.4741 19 6 2.2292 -8.5550 -3.5961 20 6 1.6396 -9.9634 -3.4951 21 6 2.0069 -10.5735 -2.1410 22 6 1.4398 -9.7023 -1.0183 23 6 1.4517 -7.4213 0.0019 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 4.0205 -5.1553 -0.1815 30 1 4.0015 -6.5291 0.9542 31 1 5.1826 -7.2334 -1.0532 32 1 3.8546 -6.6523 -2.0877 33 1 0.5774 -7.6296 -2.5687 34 1 2.0826 -6.6801 -2.5455 35 1 3.3138 -8.6076 -3.5024 36 1 1.9691 -8.1200 -4.5611 37 1 2.0433 -10.5845 -4.2947 38 1 0.5548 -9.9107 -3.5878 39 1 3.0917 -10.6253 -2.0480 40 1 1.5874 -11.5770 -2.0689 41 1 1.7025 -10.1365 -0.0537 42 1 0.3549 -9.6519 -1.1105 43 1 1.5919 -7.9188 0.9616 44 1 0.3892 -7.2519 -0.1725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335342376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:37 Heat of formation + Delta-G solvation = -102.765575 kcal Electronic energy + Delta-G solvation = -23283.294734 eV Core-core repulsion = 20006.597186 eV Total energy + Delta-G solvation = -3276.697548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.82704 -38.72750 -36.54782 -34.42329 -33.54170 -32.16435 -31.05914 -30.70382 -28.62826 -26.74475 -24.90776 -23.67913 -22.71776 -21.86209 -20.69065 -19.55650 -18.52617 -17.16907 -16.34017 -16.11860 -15.92196 -15.37557 -15.12915 -14.88499 -14.67270 -14.41623 -13.88882 -13.67660 -13.50134 -13.22104 -12.53928 -12.40548 -12.36961 -12.15808 -12.05268 -11.93913 -11.71529 -11.20921 -11.11412 -11.06650 -10.92588 -10.69749 -10.62269 -10.54660 -10.17107 -9.98105 -9.83481 -9.63727 -9.20572 -9.01480 -8.36061 -8.28906 -5.97177 -4.01901 3.13148 3.18324 3.33407 3.38289 3.39899 3.60080 4.44666 4.46479 4.55613 4.59518 4.84537 4.86990 4.99378 5.03698 5.15038 5.20212 5.30368 5.34619 5.36487 5.37652 5.46166 5.49062 5.60212 5.66779 5.73693 5.79957 5.87571 5.89516 5.98804 6.02267 6.06534 6.15842 6.17945 6.19201 6.28954 6.62844 6.86409 7.11179 7.69147 7.72394 7.84003 8.05444 8.36527 8.69666 9.06132 9.61644 11.13736 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032469 B = 0.003621 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.144765 B = 7731.079115 C = 7825.009355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.128 4.128 11 C 0.514 3.486 12 O -0.532 6.532 13 N -0.626 5.626 14 C 0.075 3.925 15 C 0.043 3.957 16 O -0.367 6.367 17 C 0.110 3.890 18 C -0.142 4.142 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.102 4.102 23 C 0.089 3.911 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.884 -21.110 -4.323 22.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.168 4.168 11 C 0.305 3.695 12 O -0.407 6.407 13 N -0.363 5.363 14 C -0.049 4.049 15 C -0.034 4.034 16 O -0.286 6.286 17 C 0.069 3.931 18 C -0.180 4.180 19 C -0.152 4.152 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.034 4.034 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.135 -21.124 -4.281 22.704 hybrid contribution 0.434 1.250 0.030 1.324 sum 7.569 -19.874 -4.251 21.687 Atomic orbital electron populations 1.69986 1.06068 1.26722 1.50015 1.25022 0.94825 0.99220 0.95261 0.86650 0.79552 0.83160 0.78550 1.20243 1.21267 1.20228 1.21171 0.92860 0.90998 1.51636 0.92675 1.18899 0.93145 0.89332 0.98600 1.21882 1.00762 0.91900 1.02225 1.21607 0.88430 0.85303 0.74206 1.90660 1.14342 1.87035 1.48630 1.48308 1.06276 1.05746 1.75921 1.22288 0.80790 1.02034 0.99782 1.22920 0.97534 0.84974 0.97990 1.87931 1.18425 1.29189 1.93043 1.21772 0.81637 0.95650 0.94002 1.22062 1.01976 0.99613 0.94314 1.21452 1.00784 0.95106 0.97842 1.21537 1.00654 0.96232 0.97216 1.21439 1.01737 0.97916 0.94028 1.21477 1.00013 0.92754 0.99773 1.22165 0.98854 0.84143 0.98270 0.92871 0.95829 0.95871 0.90348 0.90248 0.88231 0.90991 0.87900 0.92249 0.90877 0.91206 0.91599 0.92162 0.92184 0.92156 0.91128 0.92157 0.91082 0.90437 0.91426 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.62 4.01 -27.89 -0.11 -2.73 16 11 C 0.51 10.15 7.71 -10.99 -0.08 10.06 16 12 O -0.53 -12.67 15.45 5.55 0.09 -12.58 16 13 N -0.63 -9.49 2.55 -172.57 -0.44 -9.93 16 14 C 0.07 0.87 6.51 -3.75 -0.02 0.85 16 15 C 0.04 0.44 6.58 37.09 0.24 0.69 16 16 O -0.37 -4.19 8.93 -35.23 -0.31 -4.50 16 17 C 0.11 1.25 0.68 -90.56 -0.06 1.19 16 18 C -0.14 -1.68 4.19 -26.75 -0.11 -1.79 16 19 C -0.11 -1.13 5.78 -26.73 -0.15 -1.29 16 20 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 21 C -0.11 -0.97 5.78 -26.73 -0.15 -1.13 16 22 C -0.10 -0.97 4.94 -26.76 -0.13 -1.10 16 23 C 0.09 1.21 5.29 -3.57 -0.02 1.19 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.45 7.65 -51.93 -0.40 1.06 16 28 H 0.08 1.49 8.02 -51.93 -0.42 1.08 16 29 H 0.10 1.11 6.05 -51.94 -0.31 0.80 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.63 6.26 -51.93 -0.32 0.31 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.94 6.11 -51.93 -0.32 0.62 16 35 H 0.07 0.67 7.70 -51.93 -0.40 0.27 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.49 7.07 -51.93 -0.37 1.12 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -33.33 337.55 -8.71 -42.04 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.55 Total: -1.97 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -1.30 Total: -8.03 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.30 Total: -36.65 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.23 Total: -17.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.33 -8.71 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335342376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.721 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds