Wall clock time and date at job start Tue Mar 31 2020 07:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.82403 * 2 1 4 4 O 1.21281 * 119.99851 * 106.86472 * 3 2 1 5 5 N 1.34775 * 120.00028 * 286.58892 * 3 2 1 6 6 C 1.46930 * 120.63265 * 356.32616 * 5 3 2 7 7 C 1.53623 * 108.54411 * 126.37075 * 6 5 3 8 8 C 1.53033 * 109.24456 * 54.85549 * 7 6 5 9 9 C 1.52999 * 109.45057 * 178.49872 * 8 7 6 10 10 C 1.50706 * 109.47112 * 295.06175 * 9 8 7 11 11 H 1.08002 * 119.99506 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99857 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00006 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99836 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47085 * 89.99802 * 14 12 10 16 16 H 1.48492 * 109.47379 * 209.99961 * 14 12 10 17 17 H 1.48506 * 109.47021 * 329.99916 * 14 12 10 18 18 C 1.53046 * 109.53750 * 298.51265 * 8 7 6 19 19 C 1.46933 * 120.63009 * 176.60621 * 5 3 2 20 20 C 1.54377 * 109.83363 * 120.88774 * 2 1 3 21 21 C 1.55457 * 102.18418 * 98.29761 * 20 2 1 22 22 C 1.54943 * 100.99114 * 34.04213 * 21 20 2 23 23 O 1.43236 * 109.82665 * 239.11542 * 2 1 3 24 24 H 1.08993 * 109.47120 * 59.29671 * 1 2 3 25 25 H 1.08998 * 109.46880 * 179.30070 * 1 2 3 26 26 H 1.09002 * 109.46646 * 299.29647 * 1 2 3 27 27 H 1.09002 * 109.58225 * 246.20495 * 6 5 3 28 28 H 1.08999 * 109.58091 * 6.62386 * 6 5 3 29 29 H 1.09005 * 109.62822 * 294.86490 * 7 6 5 30 30 H 1.08999 * 109.42974 * 174.72935 * 7 6 5 31 31 H 1.08999 * 109.46086 * 58.52985 * 8 7 6 32 32 H 1.08995 * 109.47081 * 55.06282 * 9 8 7 33 33 H 1.08998 * 109.47245 * 175.06560 * 9 8 7 34 34 H 0.97000 * 119.99465 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.49904 * 301.40862 * 18 8 7 36 36 H 1.09008 * 109.49312 * 181.31354 * 18 8 7 37 37 H 1.08993 * 109.58356 * 353.37154 * 19 5 3 38 38 H 1.09001 * 109.58740 * 113.79866 * 19 5 3 39 39 H 1.08999 * 110.85066 * 216.43282 * 20 2 1 40 40 H 1.08997 * 110.84772 * 340.05795 * 20 2 1 41 41 H 1.08999 * 111.06247 * 276.12334 * 21 20 2 42 42 H 1.08997 * 111.18265 * 152.01118 * 21 20 2 43 43 H 1.08996 * 110.31159 * 204.69416 * 22 21 20 44 44 H 1.08999 * 110.31290 * 82.52089 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 8 2.5334 1.8848 1.0052 5 7 1.9561 2.1646 -1.1186 6 6 1.4420 1.5864 -2.3677 7 6 0.2994 2.4745 -2.8832 8 6 0.8007 3.9142 -3.0171 9 6 -0.3228 4.7959 -3.5659 10 6 -0.6652 4.3593 -4.9671 11 1 -0.1347 3.5351 -5.4206 12 6 -1.6562 5.0115 -5.6695 13 7 -2.3032 6.0141 -5.1166 14 14 -2.0811 4.4698 -7.4061 15 1 -3.1433 3.4333 -7.3554 16 1 -2.5660 5.6379 -8.1842 17 1 -0.8716 3.9076 -8.0591 18 6 1.2336 4.4352 -1.6448 19 6 2.3816 3.5710 -1.1138 20 6 2.0538 -0.7455 1.2462 21 6 2.3714 -2.1561 0.6753 22 6 2.8425 -1.7963 -0.7562 23 8 2.0158 -0.6917 -1.1564 24 1 -0.3633 0.5247 -0.8835 25 1 -0.3633 -1.0276 -0.0125 26 1 -0.3633 0.5029 0.8963 27 1 2.2409 1.5475 -3.1082 28 1 1.0677 0.5805 -2.1777 29 1 -0.5339 2.4433 -2.1812 30 1 -0.0305 2.1121 -3.8568 31 1 1.6498 3.9410 -3.7001 32 1 -1.2030 4.7003 -2.9302 33 1 0.0047 5.8355 -3.5791 34 1 -3.0007 6.4726 -5.6108 35 1 0.3915 4.3856 -0.9545 36 1 1.5687 5.4684 -1.7370 37 1 2.6274 3.8748 -0.0963 38 1 3.2555 3.6906 -1.7542 39 1 2.9564 -0.2710 1.6314 40 1 1.2847 -0.8015 2.0165 41 1 1.4772 -2.7788 0.6497 42 1 3.1678 -2.6398 1.2410 43 1 2.6941 -2.6423 -1.4272 44 1 3.8913 -1.4998 -0.7461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335385661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:20 Heat of formation + Delta-G solvation = -96.809174 kcal Electronic energy + Delta-G solvation = -23456.241135 eV Core-core repulsion = 20179.801876 eV Total energy + Delta-G solvation = -3276.439259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89669 -38.76323 -37.21643 -34.02632 -32.61440 -32.38102 -31.63256 -30.34811 -28.01633 -26.37548 -24.91901 -23.08801 -22.82910 -22.03080 -21.09284 -19.71692 -18.58784 -17.02416 -16.78214 -16.29760 -16.14831 -15.42668 -14.85176 -14.53138 -14.33001 -13.73433 -13.68240 -13.33297 -13.25532 -12.83618 -12.78195 -12.69081 -12.42509 -12.26715 -11.90379 -11.70052 -11.62511 -11.29356 -11.14484 -10.97461 -10.90421 -10.70893 -10.68173 -10.44922 -10.29607 -10.06381 -9.63421 -9.31821 -9.17636 -8.94549 -8.34704 -8.27444 -5.98840 -4.00666 2.62310 3.17989 3.31678 3.38523 3.41218 3.48545 4.22435 4.46298 4.54049 4.54394 4.75751 4.87414 5.03209 5.32655 5.35591 5.36694 5.42559 5.49835 5.51220 5.54834 5.56402 5.61502 5.67090 5.71000 5.75913 5.88492 5.97566 6.02467 6.08001 6.23277 6.41031 6.44627 6.57936 6.70695 6.75793 7.00952 7.03727 7.14611 7.63154 7.68538 7.83271 8.01154 8.27304 8.43847 9.05909 9.63135 11.12469 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.004181 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.624690 B = 6694.923627 C = 7276.134597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.092 3.908 3 C 0.514 3.486 4 O -0.552 6.552 5 N -0.590 5.590 6 C 0.100 3.900 7 C -0.120 4.120 8 C -0.081 4.081 9 C 0.028 3.972 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.128 4.128 19 C 0.109 3.891 20 C -0.132 4.132 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.359 6.359 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 -15.342 10.620 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 C 0.300 3.700 4 O -0.431 6.431 5 N -0.321 5.321 6 C -0.021 4.021 7 C -0.158 4.158 8 C -0.100 4.100 9 C -0.009 4.009 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.166 4.166 19 C -0.013 4.013 20 C -0.170 4.170 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.279 6.279 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.667 -14.893 10.880 20.379 hybrid contribution -0.326 -0.203 -0.939 1.014 sum 8.341 -15.095 9.941 19.907 Atomic orbital electron populations 1.22198 0.91748 1.03521 1.03908 1.22227 0.95936 0.89685 0.87149 1.20702 0.78529 0.87745 0.82997 1.90651 1.45686 1.73534 1.33218 1.48123 1.61865 1.11641 1.10516 1.22290 0.97179 0.98097 0.84574 1.22021 0.96263 0.95694 1.01825 1.21199 0.99994 0.94954 0.93841 1.19125 0.92184 0.94193 0.95436 1.21247 1.18510 1.16158 0.99446 0.92578 1.25016 0.96364 0.95078 0.97990 1.69967 1.24154 1.22005 1.37418 0.86650 0.78659 0.78121 0.84906 1.20730 1.21330 1.19891 1.22023 0.97382 0.98696 0.98545 1.21705 0.97342 0.80084 1.02145 1.23065 1.03317 0.94207 0.96444 1.23304 1.02328 0.97316 0.96318 1.23462 0.94849 0.89479 0.95375 1.88559 1.67099 1.43656 1.28550 0.90440 0.90915 0.90951 0.91743 0.88092 0.92442 0.89795 0.92379 0.96667 0.96641 0.93080 0.92141 0.91157 0.89842 0.91821 0.89049 0.89450 0.90222 0.89780 0.89353 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.43 37.16 0.31 -1.45 16 2 C 0.09 1.15 0.78 -91.05 -0.07 1.07 16 3 C 0.51 8.07 6.71 -10.99 -0.07 7.99 16 4 O -0.55 -9.98 15.01 5.56 0.08 -9.90 16 5 N -0.59 -9.30 2.97 -172.50 -0.51 -9.82 16 6 C 0.10 1.52 5.14 -3.48 -0.02 1.51 16 7 C -0.12 -2.14 5.15 -26.39 -0.14 -2.27 16 8 C -0.08 -1.61 2.10 -90.58 -0.19 -1.80 16 9 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 10 C -0.52 -14.05 8.39 -34.44 -0.29 -14.34 16 11 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 14 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.13 -2.22 5.36 -26.61 -0.14 -2.37 16 19 C 0.11 1.73 6.42 -3.71 -0.02 1.70 16 20 C -0.13 -1.36 5.81 -24.70 -0.14 -1.51 16 21 C -0.16 -1.20 7.16 -24.40 -0.17 -1.37 16 22 C 0.04 0.40 7.78 38.18 0.30 0.70 16 23 O -0.36 -4.35 7.77 -35.23 -0.27 -4.62 16 24 H 0.08 0.97 6.11 -51.93 -0.32 0.65 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.10 1.43 3.69 -51.93 -0.19 1.24 16 29 H 0.06 1.04 7.85 -51.93 -0.41 0.64 16 30 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.08 1.34 7.03 -51.93 -0.36 0.97 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.09 1.08 7.09 -51.93 -0.37 0.71 16 40 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -31.24 336.72 -8.20 -39.44 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.42 Total: -0.49 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.87 Total: -10.06 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.22 Total: -35.76 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.19 Total: -14.52 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.24 -8.20 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.364 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds