Wall clock time and date at job start Tue Mar 31 2020 07:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.82301 * 2 1 4 4 O 1.21280 * 120.00162 * 259.12391 * 3 2 1 5 5 N 1.34775 * 120.00074 * 79.11815 * 3 2 1 6 6 C 1.46930 * 120.62677 * 354.42332 * 5 3 2 7 7 C 1.53193 * 108.77125 * 233.58299 * 6 5 3 8 8 C 1.53036 * 109.31549 * 305.36412 * 7 6 5 9 9 C 1.53000 * 109.46202 * 181.38921 * 8 7 6 10 10 C 1.50701 * 109.47331 * 174.97419 * 9 8 7 11 11 H 1.08004 * 119.99902 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00179 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99775 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99683 * 179.72395 * 12 10 9 15 15 H 1.48510 * 109.46925 * 180.27741 * 14 12 10 16 16 H 1.48501 * 109.47414 * 300.27439 * 14 12 10 17 17 H 1.48496 * 109.47513 * 60.27893 * 14 12 10 18 18 C 1.53042 * 109.52870 * 61.37185 * 8 7 6 19 19 C 1.46920 * 120.63551 * 174.39628 * 5 3 2 20 20 C 1.54390 * 109.82706 * 239.11874 * 2 1 3 21 21 C 1.55532 * 102.14606 * 219.05401 * 20 2 1 22 22 C 1.54949 * 100.94966 * 34.15139 * 21 20 2 23 23 O 1.43237 * 109.83339 * 120.89150 * 2 1 3 24 24 H 1.08998 * 109.47261 * 60.69833 * 1 2 3 25 25 H 1.09002 * 109.46960 * 180.69986 * 1 2 3 26 26 H 1.09000 * 109.47041 * 300.69252 * 1 2 3 27 27 H 1.09000 * 109.58740 * 113.79750 * 6 5 3 28 28 H 1.09000 * 109.58890 * 353.37148 * 6 5 3 29 29 H 1.09003 * 109.49814 * 185.41462 * 7 6 5 30 30 H 1.09000 * 109.52802 * 65.33600 * 7 6 5 31 31 H 1.09004 * 109.45823 * 301.35825 * 8 7 6 32 32 H 1.08995 * 109.47401 * 54.97069 * 9 8 7 33 33 H 1.08997 * 109.46658 * 294.97098 * 9 8 7 34 34 H 0.97000 * 119.99985 * 359.71673 * 13 12 10 35 35 H 1.09003 * 109.49257 * 58.58096 * 18 8 7 36 36 H 1.08993 * 109.49864 * 178.67548 * 18 8 7 37 37 H 1.08999 * 109.58783 * 246.20407 * 19 5 3 38 38 H 1.09007 * 109.58420 * 6.48491 * 19 5 3 39 39 H 1.08999 * 110.84286 * 337.22361 * 20 2 1 40 40 H 1.08999 * 110.84789 * 100.84585 * 20 2 1 41 41 H 1.09003 * 111.13749 * 276.22464 * 21 20 2 42 42 H 1.08993 * 111.10664 * 152.06369 * 21 20 2 43 43 H 1.09007 * 110.30652 * 204.62248 * 22 21 20 44 44 H 1.08997 * 110.30804 * 82.45220 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 8 2.4332 1.9210 -1.0314 5 7 2.0623 2.1264 1.1462 6 6 1.4793 1.5760 2.3775 7 6 0.4719 2.5841 2.9394 8 6 1.1594 3.9392 3.1206 9 6 0.1656 4.9397 3.7142 10 6 0.8737 6.2373 4.0076 11 1 1.9273 6.3381 3.7926 12 6 0.1764 7.2957 4.5505 13 7 -1.1064 7.1727 4.8128 14 14 1.0559 8.9014 4.9213 15 1 0.0923 9.8709 5.5019 16 1 2.1527 8.6527 5.8910 17 1 1.6216 9.4574 3.6659 18 6 1.6485 4.4504 1.7635 19 6 2.6694 3.4636 1.1884 20 6 2.0537 -0.7455 -1.2465 21 6 3.2755 -1.5201 -0.6753 22 6 2.7765 -1.8427 0.7558 23 8 2.0160 -0.6918 1.1563 24 1 -0.3634 0.5029 -0.8962 25 1 -0.3633 -1.0276 0.0126 26 1 -0.3633 0.5246 0.8837 27 1 2.2683 1.4013 3.1090 28 1 0.9714 0.6378 2.1537 29 1 0.1032 2.2315 3.9026 30 1 -0.3630 2.6895 2.2467 31 1 2.0090 3.8281 3.7945 32 1 -0.2493 4.5354 4.6374 33 1 -0.6395 5.1182 3.0016 34 1 -1.5629 6.3387 4.6204 35 1 0.8026 4.5379 1.0816 36 1 2.1171 5.4263 1.8897 37 1 3.5553 3.4429 1.8230 38 1 2.9490 3.7700 0.1804 39 1 1.3017 -1.4347 -1.6306 40 1 2.3656 -0.0408 -2.0174 41 1 4.1637 -0.8888 -0.6486 42 1 3.4612 -2.4327 -1.2415 43 1 3.6226 -1.9894 1.4273 44 1 2.1431 -2.7296 0.7446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335385662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:31 Heat of formation + Delta-G solvation = -100.843344 kcal Electronic energy + Delta-G solvation = -23443.235310 eV Core-core repulsion = 20166.621116 eV Total energy + Delta-G solvation = -3276.614194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.95956 -38.80100 -37.29643 -34.25952 -32.59174 -32.43682 -31.77342 -30.47804 -27.81729 -26.42993 -24.53451 -23.45071 -22.48132 -22.05294 -21.38467 -19.84565 -18.77075 -17.57755 -16.74376 -16.40943 -16.01979 -15.21340 -14.96590 -14.48498 -13.99952 -13.86499 -13.74852 -13.65026 -13.53229 -13.01254 -12.87662 -12.70226 -12.49504 -12.32176 -11.90151 -11.67479 -11.53380 -11.28333 -11.20514 -11.16266 -11.02499 -10.80058 -10.64610 -10.46545 -10.12821 -9.99485 -9.74507 -9.49559 -9.31341 -8.53276 -8.29882 -8.28164 -6.32529 -4.01113 2.58765 3.13375 3.41653 3.45443 3.47116 3.65587 4.21204 4.41236 4.49457 4.56927 4.65653 4.89125 4.98256 5.22303 5.30633 5.35031 5.39097 5.41291 5.44068 5.47137 5.51080 5.54048 5.61789 5.70573 5.74754 5.83991 5.86618 5.93083 6.00024 6.13598 6.33644 6.35128 6.48073 6.59235 6.68304 6.90377 6.94578 7.03661 7.40840 7.55291 7.60468 8.22970 8.25498 8.49545 8.92143 9.70645 11.07862 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037092 B = 0.003777 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.695014 B = 7410.794447 C = 7636.058057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.091 3.909 3 C 0.516 3.484 4 O -0.548 6.548 5 N -0.591 5.591 6 C 0.110 3.890 7 C -0.134 4.134 8 C -0.074 4.074 9 C 0.015 3.985 10 C -0.596 4.596 11 H 0.049 0.951 12 C 0.013 3.987 13 N -0.915 5.915 14 Si 1.066 2.934 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.288 1.288 18 C -0.116 4.116 19 C 0.106 3.894 20 C -0.139 4.139 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.361 6.361 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 -19.368 -9.347 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 C 0.303 3.697 4 O -0.427 6.427 5 N -0.322 5.322 6 C -0.013 4.013 7 C -0.172 4.172 8 C -0.092 4.092 9 C -0.022 4.022 10 C -0.635 4.635 11 H 0.067 0.933 12 C -0.190 4.190 13 N -0.551 5.551 14 Si 0.895 3.105 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.215 1.215 18 C -0.154 4.154 19 C -0.015 4.015 20 C -0.176 4.176 21 C -0.194 4.194 22 C -0.030 4.030 23 O -0.280 6.280 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.219 -17.496 -9.053 20.658 hybrid contribution 0.241 -1.625 -0.639 1.763 sum 6.460 -19.121 -9.693 22.390 Atomic orbital electron populations 1.22213 0.92009 1.03459 1.03772 1.22181 0.95659 0.90078 0.87205 1.20598 0.78171 0.87630 0.83330 1.90650 1.49034 1.71369 1.31640 1.48078 1.56971 1.17477 1.09679 1.21979 0.96705 0.97062 0.85515 1.22102 0.97959 0.96414 1.00727 1.21056 0.99036 0.93432 0.95721 1.19248 0.94215 0.93996 0.94771 1.22045 0.97150 0.98542 1.45738 0.93250 1.25811 0.96181 1.02836 0.94173 1.70780 1.09525 1.29210 1.45635 0.83582 0.75026 0.75481 0.76441 1.20857 1.21506 1.21481 1.21864 0.98165 0.98502 0.96846 1.21808 0.96043 0.81500 1.02194 1.23162 0.97598 0.99506 0.97384 1.23301 0.98805 1.01061 0.96187 1.23462 0.95137 0.88952 0.95484 1.88559 1.70598 1.40210 1.28654 0.90778 0.90914 0.90793 0.91678 0.88529 0.91169 0.92267 0.92241 0.97564 0.97609 0.92159 0.92519 0.89728 0.91819 0.89701 0.89804 0.87905 0.90328 0.89693 0.89560 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.44 37.16 0.31 -1.34 16 2 C 0.09 1.09 0.78 -91.04 -0.07 1.02 16 3 C 0.52 8.05 6.68 -10.99 -0.07 7.97 16 4 O -0.55 -9.96 14.88 5.56 0.08 -9.87 16 5 N -0.59 -9.33 2.97 -172.77 -0.51 -9.84 16 6 C 0.11 1.59 5.13 -3.71 -0.02 1.57 16 7 C -0.13 -2.22 5.36 -26.61 -0.14 -2.37 16 8 C -0.07 -1.48 2.10 -90.58 -0.19 -1.67 16 9 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 10 C -0.60 -16.69 8.39 -34.44 -0.29 -16.98 16 11 H 0.05 1.35 7.06 -52.48 -0.37 0.98 16 12 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 13 N -0.91 -28.16 13.65 55.43 0.76 -27.40 16 14 Si 1.07 25.40 29.90 -169.99 -5.08 20.31 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 C -0.12 -2.21 5.19 -26.61 -0.14 -2.35 16 19 C 0.11 1.78 6.44 -3.71 -0.02 1.75 16 20 C -0.14 -1.38 6.04 -24.66 -0.15 -1.53 16 21 C -0.16 -1.31 7.16 -24.36 -0.17 -1.48 16 22 C 0.05 0.39 7.78 38.19 0.30 0.69 16 23 O -0.36 -4.17 7.86 -35.23 -0.28 -4.44 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 1.27 3.69 -51.93 -0.19 1.08 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 33 H 0.01 0.15 8.00 -51.93 -0.42 -0.26 16 34 H 0.27 8.22 7.22 -40.82 -0.29 7.92 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.73 6.91 -51.93 -0.36 1.37 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.45 7.00 -51.92 -0.36 1.09 16 39 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 40 H 0.10 1.20 6.70 -51.93 -0.35 0.85 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -32.25 335.83 -8.20 -40.45 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.37 Total: -0.09 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -0.86 Total: -14.17 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.24 Total: -37.25 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.19 Total: -14.32 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.25 -8.20 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335385662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.394 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds