Wall clock time and date at job start Tue Mar 31 2020 07:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 110.45873 * 2 1 4 4 O 1.21276 * 120.00580 * 116.24714 * 3 2 1 5 5 N 1.34781 * 119.99566 * 296.25208 * 3 2 1 6 6 C 1.46925 * 120.63180 * 4.95132 * 5 3 2 7 7 C 1.52761 * 109.00778 * 233.58235 * 6 5 3 8 8 C 1.53039 * 109.38317 * 305.59046 * 7 6 5 9 9 C 1.53005 * 109.45489 * 181.26105 * 8 7 6 10 10 C 1.50700 * 109.47381 * 64.93473 * 9 8 7 11 11 H 1.07997 * 119.99762 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00043 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99958 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46825 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47130 * 119.99757 * 14 12 10 17 17 H 1.48494 * 109.47088 * 239.99888 * 14 12 10 18 18 C 1.53034 * 109.53972 * 61.24291 * 8 7 6 19 19 C 1.46925 * 120.62768 * 185.23338 * 5 3 2 20 20 C 1.54509 * 110.51024 * 237.24535 * 2 1 3 21 21 C 1.54484 * 104.06112 * 241.35442 * 20 2 1 22 22 O 1.44422 * 104.80366 * 23.98096 * 21 20 2 23 23 C 1.44426 * 105.27441 * 319.48580 * 22 21 20 24 24 H 1.09005 * 109.47374 * 291.16845 * 1 2 3 25 25 H 1.08995 * 109.47336 * 51.17319 * 1 2 3 26 26 H 1.09005 * 109.47461 * 171.16867 * 1 2 3 27 27 H 1.08992 * 109.58922 * 353.42350 * 6 5 3 28 28 H 1.09004 * 109.58616 * 113.84595 * 6 5 3 29 29 H 1.08998 * 109.56259 * 185.55132 * 7 6 5 30 30 H 1.09004 * 109.35793 * 65.50071 * 7 6 5 31 31 H 1.09000 * 109.44904 * 301.22186 * 8 7 6 32 32 H 1.09000 * 109.46880 * 184.93204 * 9 8 7 33 33 H 1.08996 * 109.47053 * 304.92525 * 9 8 7 34 34 H 0.96999 * 120.00082 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.49815 * 178.68413 * 18 8 7 36 36 H 1.08996 * 109.52803 * 58.60114 * 18 8 7 37 37 H 1.09006 * 109.58546 * 246.15760 * 19 5 3 38 38 H 1.09001 * 109.59022 * 6.57619 * 19 5 3 39 39 H 1.09002 * 110.51346 * 359.97438 * 20 2 1 40 40 H 1.08998 * 110.51237 * 122.71594 * 20 2 1 41 41 H 1.09000 * 110.37153 * 265.14610 * 21 20 2 42 42 H 1.09000 * 110.36986 * 142.81410 * 21 20 2 43 43 H 1.09002 * 110.37406 * 159.34371 * 23 22 21 44 44 H 1.09000 * 110.37536 * 281.56719 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7038 1.8178 0.9419 5 7 1.8084 2.2237 -1.0469 6 6 0.9367 1.7841 -2.1448 7 6 1.6810 1.9507 -3.4684 8 6 2.1738 3.3940 -3.5958 9 6 2.8923 3.5708 -4.9350 10 6 1.9090 3.3827 -6.0614 11 1 0.8751 3.1589 -5.8439 12 6 2.3295 3.4952 -7.3697 13 7 3.5887 3.7671 -7.6345 14 14 1.1108 3.2613 -8.7659 15 1 -0.2324 2.9656 -8.2060 16 1 1.0464 4.5017 -9.5797 17 1 1.5498 2.1300 -9.6218 18 6 3.1417 3.7072 -2.4526 19 6 2.4095 3.5627 -1.1148 20 6 2.0713 -0.7830 -1.2170 21 6 2.8757 -1.9430 -0.5895 22 8 2.3069 -2.1168 0.7266 23 6 2.0712 -0.7796 1.2189 24 1 -0.3634 0.3711 0.9583 25 1 -0.3634 0.6443 -0.8005 26 1 -0.3634 -1.0155 -0.1578 27 1 0.6730 0.7359 -2.0048 28 1 0.0319 2.3918 -2.1587 29 1 1.0099 1.7209 -4.2960 30 1 2.5335 1.2718 -3.4914 31 1 1.3229 4.0736 -3.5477 32 1 3.3191 4.5723 -4.9888 33 1 3.6886 2.8315 -5.0204 34 1 3.8845 3.8466 -8.5549 35 1 3.5103 4.7277 -2.5572 36 1 3.9808 3.0123 -2.4850 37 1 1.6272 4.3184 -1.0429 38 1 3.1173 3.6875 -0.2954 39 1 1.2490 -1.1704 -1.8185 40 1 2.7219 -0.1496 -1.8200 41 1 3.9301 -1.6770 -0.5151 42 1 2.7534 -2.8518 -1.1787 43 1 1.3310 -0.7947 2.0188 44 1 3.0019 -0.3359 1.5725 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500296.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:08 Heat of formation + Delta-G solvation = -93.447743 kcal Electronic energy + Delta-G solvation = -23496.438247 eV Core-core repulsion = 20220.144750 eV Total energy + Delta-G solvation = -3276.293497 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07440 -38.82724 -37.32420 -34.55016 -33.58889 -32.04602 -30.67047 -29.98683 -28.14610 -26.72824 -25.00684 -23.29041 -22.80196 -22.51262 -21.02180 -19.75711 -18.55027 -16.95617 -16.48730 -16.35278 -16.19718 -15.35600 -14.87793 -14.75004 -14.54885 -14.08884 -13.93742 -13.61331 -13.35552 -13.24061 -12.87882 -12.62664 -12.41776 -12.07429 -12.00338 -11.74092 -11.44665 -11.27832 -11.23992 -11.09865 -10.95327 -10.78178 -10.76084 -10.46220 -10.16902 -9.91607 -9.74804 -9.55306 -9.30021 -9.01671 -8.43366 -8.39783 -6.05050 -4.07367 2.59650 3.02818 3.26110 3.34497 3.36710 3.75388 4.24890 4.40563 4.45056 4.52001 4.72389 4.93984 5.02417 5.11787 5.28671 5.30623 5.33999 5.40632 5.43997 5.50304 5.55284 5.59408 5.62594 5.67731 5.68797 5.73897 5.78311 5.90075 5.96519 6.00862 6.29840 6.32662 6.44646 6.56223 6.63401 6.88879 6.91896 7.04217 7.48893 7.61439 7.75210 7.94333 8.17307 8.36430 8.99363 9.56890 11.06188 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023620 B = 0.004289 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.171802 B = 6526.342297 C = 7016.878118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.528 3.472 4 O -0.549 6.549 5 N -0.599 5.599 6 C 0.089 3.911 7 C -0.120 4.120 8 C -0.081 4.081 9 C 0.027 3.973 10 C -0.517 4.517 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.129 4.129 19 C 0.112 3.888 20 C -0.148 4.148 21 C 0.045 3.955 22 O -0.374 6.374 23 C 0.066 3.934 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.015 0.985 34 H 0.260 0.740 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -7.928 13.802 16.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C 0.316 3.684 4 O -0.427 6.427 5 N -0.332 5.332 6 C -0.033 4.033 7 C -0.158 4.158 8 C -0.099 4.099 9 C -0.010 4.010 10 C -0.555 4.555 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.167 4.167 19 C -0.010 4.010 20 C -0.185 4.185 21 C -0.031 4.031 22 O -0.293 6.293 23 C -0.011 4.011 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.033 0.967 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.908 -7.871 14.260 17.011 hybrid contribution -0.552 0.221 -1.216 1.353 sum -5.459 -7.650 13.044 16.077 Atomic orbital electron populations 1.22143 0.91384 1.03544 1.03339 1.22094 0.98366 0.93291 0.98060 1.20206 0.79617 0.86601 0.81991 1.90655 1.41278 1.76122 1.34693 1.48090 1.48078 1.16156 1.20836 1.22260 0.93128 1.00661 0.87248 1.21859 1.00436 0.98512 0.94978 1.21191 0.97611 0.94862 0.96269 1.19127 0.95422 0.97077 0.89328 1.21259 0.95446 1.47901 0.90875 0.92560 1.25021 0.95044 0.95398 0.98957 1.69971 1.14990 1.49123 1.19320 0.86598 0.81495 0.77751 0.82518 1.19758 1.21074 1.21081 1.22031 0.98896 1.02028 0.93787 1.21696 0.97605 0.82484 0.99252 1.23225 1.01258 0.97270 0.96793 1.23438 0.97051 0.98723 0.83932 1.89106 1.83076 1.25872 1.31232 1.23392 1.01471 0.81701 0.94582 0.91835 0.90579 0.90863 0.89078 0.91458 0.89587 0.92294 0.92323 0.96600 0.96658 0.93069 0.91054 0.92136 0.91752 0.89728 0.89240 0.89336 0.92055 0.88665 0.88696 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.92 37.16 0.29 -1.08 16 2 C -0.11 -1.31 0.68 -154.10 -0.11 -1.41 16 3 C 0.53 7.56 6.35 -10.99 -0.07 7.49 16 4 O -0.55 -9.50 14.96 5.56 0.08 -9.41 16 5 N -0.60 -8.34 2.91 -173.03 -0.50 -8.85 16 6 C 0.09 1.13 4.16 -3.93 -0.02 1.12 16 7 C -0.12 -1.92 5.15 -26.83 -0.14 -2.06 16 8 C -0.08 -1.49 2.10 -90.58 -0.19 -1.68 16 9 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 10 C -0.52 -13.59 8.39 -34.44 -0.29 -13.88 16 11 H 0.06 1.42 7.06 -52.49 -0.37 1.05 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 14 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.13 -2.09 5.36 -26.61 -0.14 -2.24 16 19 C 0.11 1.62 6.42 -3.71 -0.02 1.59 16 20 C -0.15 -1.56 4.68 -25.16 -0.12 -1.68 16 21 C 0.05 0.47 7.63 37.94 0.29 0.76 16 22 O -0.37 -4.59 11.65 -35.23 -0.41 -5.00 16 23 C 0.07 0.78 6.48 37.93 0.25 1.02 16 24 H 0.06 0.57 8.06 -51.93 -0.42 0.15 16 25 H 0.08 0.69 5.04 -51.93 -0.26 0.42 16 26 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 27 H 0.09 0.98 3.10 -51.93 -0.16 0.82 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 30 H 0.06 0.97 7.41 -51.93 -0.38 0.58 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.27 7.04 -51.93 -0.37 0.90 16 39 H 0.09 0.81 7.24 -51.93 -0.38 0.43 16 40 H 0.09 1.04 6.42 -51.93 -0.33 0.71 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.99 7.82 -51.93 -0.41 0.58 16 44 H 0.08 1.03 7.01 -51.93 -0.36 0.66 16 LS Contribution 331.68 15.07 5.00 5.00 Total: -1.00 -30.56 331.68 -7.76 -38.32 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.16 Total: -0.46 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.49 Total: -10.03 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.23 Total: -34.19 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.33 Total: -14.42 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.56 -7.76 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500296.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.123 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds