Wall clock time and date at job start Tue Mar 31 2020 06:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 112.84761 * 2 1 4 4 C 1.53781 * 113.61429 * 228.80651 * 2 1 3 5 5 C 1.53781 * 87.08070 * 270.79753 * 4 2 1 6 6 C 1.50697 * 113.61630 * 219.93625 * 5 4 2 7 7 O 1.21288 * 120.00090 * 358.47236 * 6 5 4 8 8 N 1.34768 * 120.00434 * 178.46913 * 6 5 4 9 9 C 1.46931 * 120.63025 * 359.72229 * 8 6 5 10 10 C 1.53620 * 108.54386 * 126.36549 * 9 8 6 11 11 C 1.53036 * 109.24393 * 54.85901 * 10 9 8 12 12 C 1.53001 * 109.46313 * 178.48806 * 11 10 9 13 13 C 1.50701 * 109.47300 * 295.06924 * 12 11 10 14 14 H 1.07998 * 119.99506 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00036 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99801 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47228 * 89.99915 * 17 15 13 19 19 H 1.48509 * 109.46982 * 209.99853 * 17 15 13 20 20 H 1.48493 * 109.47216 * 329.99481 * 17 15 13 21 21 C 1.53041 * 109.53852 * 298.51237 * 11 10 9 22 22 C 1.46932 * 120.63614 * 179.97438 * 8 6 5 23 23 C 1.53786 * 87.17350 * 334.52830 * 5 4 2 24 24 H 1.08998 * 109.46824 * 191.19780 * 1 2 3 25 25 H 1.08998 * 109.47383 * 311.19158 * 1 2 3 26 26 H 1.08998 * 109.47263 * 71.20060 * 1 2 3 27 27 H 0.96701 * 113.99652 * 48.80754 * 3 2 1 28 28 H 1.08999 * 113.61181 * 156.24808 * 4 2 1 29 29 H 1.09000 * 113.69133 * 25.35635 * 4 2 1 30 30 H 1.09002 * 113.61445 * 89.11830 * 5 4 2 31 31 H 1.08997 * 109.58596 * 246.20063 * 9 8 6 32 32 H 1.08998 * 109.58363 * 6.62384 * 9 8 6 33 33 H 1.08997 * 109.63511 * 294.86344 * 10 9 8 34 34 H 1.09006 * 109.45935 * 174.74061 * 10 9 8 35 35 H 1.08999 * 109.44993 * 58.52192 * 11 10 9 36 36 H 1.09002 * 109.46624 * 55.06999 * 12 11 10 37 37 H 1.09001 * 109.47245 * 175.06533 * 12 11 10 38 38 H 0.96994 * 119.99824 * 179.97438 * 16 15 13 39 39 H 1.09008 * 109.49660 * 301.40878 * 21 11 10 40 40 H 1.09000 * 109.52444 * 181.33603 * 21 11 10 41 41 H 1.08999 * 109.57886 * 353.37646 * 22 8 6 42 42 H 1.09001 * 109.58414 * 113.65977 * 22 8 6 43 43 H 1.08992 * 113.61675 * 140.02412 * 23 5 4 44 44 H 1.09000 * 113.60973 * 270.92699 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 2.1460 -0.9280 -1.0603 5 6 2.0951 -2.0419 -0.0013 6 6 3.3100 -2.9335 -0.0041 7 8 4.1945 -2.7508 -0.8136 8 7 3.4138 -3.9339 0.8930 9 6 2.3535 -4.1640 1.8838 10 6 1.9070 -5.6309 1.7899 11 6 3.1267 -6.5407 1.9525 12 6 2.6823 -8.0038 1.8975 13 6 1.7978 -8.3049 3.0799 14 1 1.5753 -7.5304 3.7989 15 6 1.2727 -9.5692 3.2437 16 7 0.5012 -9.8321 4.2758 17 14 1.6582 -10.9090 2.0004 18 1 2.8848 -11.6342 2.4185 19 1 0.5204 -11.8607 1.9295 20 1 1.8757 -10.2972 0.6649 21 6 4.1231 -6.2677 0.8235 22 6 4.5919 -4.8119 0.9024 23 6 2.1489 -0.9306 1.0602 24 1 -0.3633 -1.0081 0.1996 25 1 -0.3634 0.6768 0.7733 26 1 -0.3634 0.3312 -0.9728 27 1 1.7014 1.9052 0.6648 28 1 3.1585 -0.6476 -1.3507 29 1 1.4950 -1.1086 -1.9157 30 1 1.1595 -2.6014 -0.0007 31 1 2.7367 -3.9590 2.8834 32 1 1.5081 -3.5090 1.6729 33 1 1.4450 -5.8117 0.8194 34 1 1.1871 -5.8427 2.5806 35 1 3.6025 -6.3417 2.9128 36 1 2.1289 -8.1809 0.9753 37 1 3.5589 -8.6511 1.9252 38 1 0.1315 -10.7215 4.3909 39 1 3.6403 -6.4426 -0.1381 40 1 4.9809 -6.9324 0.9260 41 1 5.2238 -4.5845 0.0439 42 1 5.1556 -4.6570 1.8224 43 1 1.4993 -1.1125 1.9163 44 1 3.1622 -0.6509 1.3485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335500889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:49 Heat of formation + Delta-G solvation = -83.188959 kcal Electronic energy + Delta-G solvation = -22771.511107 eV Core-core repulsion = 19495.662464 eV Total energy + Delta-G solvation = -3275.848643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.86578 -39.03913 -37.28402 -35.07472 -34.06335 -32.19153 -30.93995 -29.49512 -28.55958 -26.06477 -25.59538 -24.01539 -22.87116 -21.50130 -20.09281 -19.25673 -18.60022 -17.54957 -16.82493 -16.62379 -15.82130 -15.61687 -14.84488 -14.62440 -14.35809 -14.08041 -13.83339 -13.48505 -13.22009 -13.21041 -12.96426 -12.70818 -12.35148 -12.32972 -12.08198 -12.00710 -11.56319 -11.44045 -11.21332 -11.15685 -10.92634 -10.76667 -10.68893 -10.36094 -10.11544 -9.92404 -9.74718 -9.55433 -9.47906 -9.09925 -8.56795 -8.42058 -6.07919 -4.05411 2.66288 3.08935 3.28090 3.36150 3.39795 3.90350 4.14388 4.29458 4.42385 4.43099 4.45998 4.73023 4.99684 5.13961 5.15841 5.25445 5.30739 5.34395 5.40110 5.42537 5.47779 5.54633 5.59928 5.65347 5.69245 5.79527 5.89759 5.91872 6.00041 6.08899 6.25801 6.27615 6.40162 6.60153 6.77041 6.82652 6.92830 7.21855 7.39524 7.40556 7.54314 7.76493 8.26288 8.49748 8.96298 9.55420 11.05259 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027887 B = 0.003644 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.825817 B = 7682.125613 C = 8223.520799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 O -0.551 6.551 4 C -0.099 4.099 5 C -0.135 4.135 6 C 0.526 3.474 7 O -0.550 6.550 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.121 4.121 11 C -0.072 4.072 12 C -0.010 4.010 13 C -0.516 4.516 14 H 0.073 0.927 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.266 1.266 21 C -0.132 4.132 22 C 0.112 3.888 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.375 0.625 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 18.538 -6.546 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 O -0.356 6.356 4 C -0.137 4.137 5 C -0.156 4.156 6 C 0.313 3.687 7 O -0.428 6.428 8 N -0.336 5.336 9 C -0.018 4.018 10 C -0.159 4.159 11 C -0.091 4.091 12 C -0.047 4.047 13 C -0.554 4.554 14 H 0.091 0.909 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.191 1.191 21 C -0.170 4.170 22 C -0.011 4.011 23 C -0.182 4.182 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.222 0.778 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.134 0.866 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.546 18.226 -7.371 19.721 hybrid contribution -0.324 -0.849 0.062 0.910 sum 1.222 17.378 -7.309 18.892 Atomic orbital electron populations 1.22173 0.93495 1.03339 1.02932 1.22684 0.92455 0.81981 0.96935 1.86593 1.65455 1.22640 1.60956 1.22966 1.03265 0.91652 0.95784 1.22512 0.98205 0.94987 0.99929 1.20276 0.87780 0.80434 0.80159 1.90658 1.41803 1.71264 1.39085 1.48167 1.21573 1.30716 1.33143 1.22033 0.89584 0.98629 0.91554 1.21992 0.99178 0.91653 1.03040 1.21002 0.93979 0.97389 0.96704 1.19621 0.96209 0.91261 0.97595 1.21128 1.28727 0.97250 1.08311 0.90861 1.25023 0.94724 0.98547 0.95195 1.69908 1.33679 1.21645 1.29083 0.86815 0.77965 0.82010 0.82695 1.20367 1.21475 1.19083 1.22049 1.00128 0.94493 1.00320 1.21634 0.87181 0.89858 1.02385 1.23680 1.02846 0.94776 0.96926 0.90806 0.91761 0.91324 0.77811 0.87908 0.90381 0.86550 0.91354 0.90348 0.92316 0.89190 0.91746 0.96686 0.97037 0.92784 0.92098 0.91141 0.89672 0.91764 0.90223 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.33 37.16 0.35 -0.73 16 2 C 0.10 0.89 1.94 -89.67 -0.17 0.72 16 3 O -0.55 -5.22 13.50 -35.23 -0.48 -5.70 16 4 C -0.10 -1.08 6.81 -25.92 -0.18 -1.26 16 5 C -0.14 -1.47 2.38 -90.96 -0.22 -1.69 16 6 C 0.53 7.63 7.22 -10.99 -0.08 7.55 16 7 O -0.55 -9.81 15.32 5.55 0.09 -9.72 16 8 N -0.60 -8.51 2.97 -172.53 -0.51 -9.02 16 9 C 0.10 1.35 6.33 -3.49 -0.02 1.33 16 10 C -0.12 -1.97 5.21 -26.39 -0.14 -2.10 16 11 C -0.07 -1.31 2.10 -90.58 -0.19 -1.50 16 12 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 13 C -0.52 -13.89 8.94 -34.44 -0.31 -14.20 16 14 H 0.07 2.09 7.30 -52.49 -0.38 1.71 16 15 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 16 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 17 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.13 -2.08 5.36 -26.63 -0.14 -2.22 16 22 C 0.11 1.62 6.43 -3.73 -0.02 1.59 16 23 C -0.14 -1.34 6.76 -25.77 -0.17 -1.51 16 24 H 0.07 0.46 7.35 -51.93 -0.38 0.08 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.37 1.93 9.04 45.56 0.41 2.34 16 28 H 0.10 1.37 7.45 -51.93 -0.39 0.98 16 29 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 30 H 0.12 1.09 6.82 -51.93 -0.35 0.74 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.82 5.66 -51.93 -0.29 0.53 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 37 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.28 7.00 -51.93 -0.36 0.92 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 44 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 341.81 15.07 5.15 5.15 Total: -1.00 -32.54 341.81 -7.83 -40.37 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.69 Total: 1.14 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.49 Total: -12.57 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.26 Total: -35.36 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.39 Total: -15.42 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.54 -7.83 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335500889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.820 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds