Wall clock time and date at job start Tue Mar 31 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99802 * 2 1 4 4 H 1.48504 * 109.47580 * 269.99945 * 3 2 1 5 5 H 1.48504 * 109.47416 * 29.99673 * 3 2 1 6 6 H 1.48505 * 109.47387 * 150.00088 * 3 2 1 7 7 C 1.37876 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47406 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.46359 * 175.00023 * 10 9 7 12 12 C 1.53192 * 109.31511 * 181.38641 * 11 10 9 13 13 N 1.46932 * 108.77416 * 305.36527 * 12 11 10 14 14 C 1.34772 * 120.62852 * 233.58501 * 13 12 11 15 15 O 1.21287 * 119.99785 * 185.15444 * 14 13 12 16 16 C 1.50697 * 119.99975 * 5.14907 * 14 13 12 17 17 H 1.08994 * 110.43821 * 34.17897 * 16 14 13 18 18 C 1.54886 * 110.48861 * 271.49198 * 16 14 13 19 19 C 1.54891 * 102.75139 * 203.37966 * 18 16 14 20 20 C 1.54266 * 104.19279 * 37.94408 * 19 18 16 21 21 H 1.09005 * 110.03377 * 95.67850 * 20 19 18 22 22 O 1.42904 * 110.07314 * 217.08000 * 20 19 18 23 23 C 1.53877 * 106.60216 * 336.39064 * 20 19 18 24 24 C 1.46924 * 118.73588 * 53.86080 * 13 12 11 25 25 C 1.53041 * 109.46195 * 295.06912 * 10 9 7 26 26 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47121 * 59.99807 * 9 7 2 28 28 H 1.08996 * 109.47108 * 300.00198 * 9 7 2 29 29 H 1.09000 * 109.45089 * 55.02986 * 10 9 7 30 30 H 1.08995 * 109.49304 * 61.43308 * 11 10 9 31 31 H 1.08999 * 109.49458 * 301.33727 * 11 10 9 32 32 H 1.08995 * 109.58519 * 185.57866 * 12 11 10 33 33 H 1.09003 * 109.70396 * 65.21725 * 12 11 10 34 34 H 1.08998 * 110.75614 * 321.69649 * 18 16 14 35 35 H 1.08999 * 110.75696 * 84.88484 * 18 16 14 36 36 H 1.08993 * 110.49121 * 279.26999 * 19 18 16 37 37 H 1.09002 * 110.48771 * 156.61644 * 19 18 16 38 38 H 0.96694 * 113.99918 * 297.88037 * 22 20 19 39 39 H 1.08997 * 110.03174 * 119.28538 * 23 20 19 40 40 H 1.08993 * 110.03205 * 240.71648 * 23 20 19 41 41 H 1.09000 * 109.59147 * 65.93165 * 24 13 12 42 42 H 1.09001 * 109.58154 * 186.35110 * 24 13 12 43 43 H 1.08999 * 109.49780 * 298.56807 * 25 10 9 44 44 H 1.09004 * 109.49990 * 58.65790 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4842 -4.9837 0.1263 12 6 2.4846 -6.1433 0.1608 13 7 3.3507 -6.0561 -1.0229 14 6 3.4926 -7.1113 -1.8492 15 8 4.2810 -7.0592 -2.7694 16 6 2.6717 -8.3558 -1.6298 17 1 1.6849 -8.0980 -1.2453 18 6 3.3988 -9.3211 -0.6610 19 6 2.7822 -10.6956 -1.0211 20 6 2.6176 -10.6463 -2.5542 21 1 3.4736 -11.1178 -3.0370 22 8 1.4121 -11.3099 -2.9396 23 6 2.5473 -9.1587 -2.9412 24 6 4.0639 -4.7986 -1.2851 25 6 3.0414 -3.6523 -1.3065 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8902 29 1 2.9290 -3.5551 0.8428 30 1 0.8185 -5.1028 -0.7285 31 1 0.8991 -4.9805 1.0460 32 1 1.9461 -7.0909 0.1505 33 1 3.0920 -6.0780 1.0636 34 1 4.4728 -9.3188 -0.8473 35 1 3.1875 -9.0596 0.3758 36 1 1.8132 -10.8176 -0.5372 37 1 3.4567 -11.5029 -0.7357 38 1 1.3907 -12.2497 -2.7129 39 1 3.3692 -8.9082 -3.6118 40 1 1.5934 -8.9427 -3.4222 41 1 4.7972 -4.6233 -0.4979 42 1 4.5678 -4.8587 -2.2498 43 1 2.3611 -3.7839 -2.1478 44 1 3.5648 -2.7014 -1.4067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335501413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:56 Heat of formation + Delta-G solvation = -115.173626 kcal Electronic energy + Delta-G solvation = -22675.840397 eV Core-core repulsion = 19398.604796 eV Total energy + Delta-G solvation = -3277.235602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46231 -38.55417 -37.23155 -35.14260 -34.01191 -32.11408 -30.90536 -29.23064 -28.50661 -27.55221 -24.68071 -23.08874 -22.27511 -21.22771 -20.77426 -19.47135 -18.61498 -17.97337 -17.03822 -16.29597 -16.09870 -15.40132 -14.71329 -14.53483 -14.36246 -14.15777 -13.82845 -13.60473 -13.22295 -13.03332 -12.88725 -12.79637 -12.14451 -12.00801 -11.87725 -11.65199 -11.35616 -11.19627 -11.09857 -10.99475 -10.91466 -10.75054 -10.69267 -10.43222 -10.21989 -10.10106 -9.67201 -9.57849 -9.27293 -8.97487 -8.37435 -8.33709 -6.00839 -4.02726 2.68106 3.13919 3.31044 3.37781 3.40308 3.96110 4.20128 4.31769 4.44818 4.50969 4.92007 4.95129 5.06515 5.14163 5.22690 5.28220 5.34209 5.35802 5.41613 5.45014 5.55816 5.58136 5.60386 5.68924 5.82576 5.90900 5.94731 5.97448 6.06380 6.09376 6.34238 6.36856 6.52248 6.66132 6.97418 7.00220 7.10495 7.38701 7.57501 7.65138 7.79723 7.98669 8.28739 8.41306 9.03683 9.61259 11.10447 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.003267 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.888487 B = 8567.381884 C = 8786.471546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.131 4.131 12 C 0.105 3.895 13 N -0.603 5.603 14 C 0.520 3.480 15 O -0.550 6.550 16 C -0.114 4.114 17 H 0.100 0.900 18 C -0.108 4.108 19 C -0.156 4.156 20 C 0.100 3.900 21 H 0.060 0.940 22 O -0.566 6.566 23 C -0.109 4.109 24 C 0.108 3.892 25 C -0.117 4.117 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.375 0.625 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.083 -21.702 -0.156 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.170 4.170 12 C -0.018 4.018 13 N -0.336 5.336 14 C 0.308 3.692 15 O -0.428 6.428 16 C -0.136 4.136 17 H 0.118 0.882 18 C -0.146 4.146 19 C -0.193 4.193 20 C 0.042 3.958 21 H 0.078 0.922 22 O -0.371 6.371 23 C -0.146 4.146 24 C -0.014 4.014 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.222 0.778 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.206 -20.933 -0.857 21.588 hybrid contribution 0.449 0.556 0.369 0.804 sum 5.655 -20.377 -0.489 21.153 Atomic orbital electron populations 1.69961 1.06047 1.26547 1.50964 1.25019 0.94810 0.99200 0.95440 0.86643 0.79862 0.83687 0.78101 1.20705 1.21298 1.19900 1.21239 0.92953 0.90961 1.50313 0.92597 1.19121 0.93588 0.91059 0.97157 1.21192 0.97978 0.94500 0.96275 1.22044 0.97568 0.95050 1.02296 1.21890 0.92715 0.99873 0.87309 1.48172 1.46359 1.12972 1.26059 1.20402 0.82912 0.84287 0.81554 1.90643 1.37864 1.82188 1.32129 1.22144 1.00012 0.93396 0.98002 0.88160 1.22376 1.00134 0.93356 0.98706 1.23119 1.01859 0.97672 0.96698 1.22484 0.86590 0.93565 0.93196 0.92152 1.86580 1.39642 1.26700 1.84226 1.22097 1.04477 0.91400 0.96650 1.21879 0.94844 0.82784 1.01881 1.21970 0.97555 0.97257 0.98753 0.93048 0.96647 0.96604 0.92352 0.91944 0.91038 0.90291 0.91431 0.90661 0.90497 0.90188 0.91070 0.77784 0.88794 0.90122 0.91906 0.89745 0.92357 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.06 8.39 -34.44 -0.29 -14.35 16 8 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 9 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 10 C -0.08 -1.54 2.10 -90.58 -0.19 -1.73 16 11 C -0.13 -2.03 5.36 -26.61 -0.14 -2.18 16 12 C 0.10 1.31 6.31 -3.71 -0.02 1.29 16 13 N -0.60 -8.76 2.97 -172.50 -0.51 -9.27 16 14 C 0.52 7.64 6.86 -10.99 -0.08 7.56 16 15 O -0.55 -9.81 15.01 5.55 0.08 -9.73 16 16 C -0.11 -1.28 2.28 -90.11 -0.21 -1.48 16 17 H 0.10 1.05 6.50 -51.93 -0.34 0.71 16 18 C -0.11 -0.95 6.25 -24.74 -0.15 -1.10 16 19 C -0.16 -1.14 6.55 -25.07 -0.16 -1.30 16 20 C 0.10 0.90 4.26 -25.61 -0.11 0.79 16 21 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 22 O -0.57 -5.14 13.22 -35.23 -0.47 -5.60 16 23 C -0.11 -1.23 6.13 -25.61 -0.16 -1.39 16 24 C 0.11 1.70 6.45 -3.49 -0.02 1.68 16 25 C -0.12 -2.14 5.21 -26.39 -0.14 -2.28 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.80 5.28 -51.93 -0.27 0.52 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 35 H 0.08 0.59 7.95 -51.93 -0.41 0.17 16 36 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 1.69 9.11 45.56 0.41 2.11 16 39 H 0.09 1.21 6.78 -51.93 -0.35 0.86 16 40 H 0.08 0.97 7.95 -51.93 -0.41 0.56 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.39 7.04 -51.93 -0.37 1.03 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.63 6.91 -51.93 -0.36 1.27 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -32.35 341.82 -8.59 -40.94 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.67 Total: 0.42 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.89 Total: -12.44 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.22 Total: -35.14 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.38 Total: -15.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.35 -8.59 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.231 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds