Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99802 * 2 1 4 4 H 1.48504 * 109.47580 * 269.99945 * 3 2 1 5 5 H 1.48504 * 109.47416 * 29.99673 * 3 2 1 6 6 H 1.48505 * 109.47387 * 150.00088 * 3 2 1 7 7 C 1.37876 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99951 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47406 * 179.97438 * 9 7 2 11 11 C 1.53040 * 109.46359 * 175.00023 * 10 9 7 12 12 C 1.53192 * 109.31511 * 181.38641 * 11 10 9 13 13 N 1.46932 * 108.77416 * 305.36527 * 12 11 10 14 14 C 1.34772 * 120.62852 * 233.58501 * 13 12 11 15 15 O 1.21287 * 119.99785 * 185.15444 * 14 13 12 16 16 C 1.50697 * 119.99975 * 5.14907 * 14 13 12 17 17 H 1.08994 * 110.43821 * 34.17897 * 16 14 13 18 18 C 1.54886 * 110.48861 * 271.49198 * 16 14 13 19 19 C 1.54891 * 102.75139 * 203.37966 * 18 16 14 20 20 C 1.54266 * 104.19279 * 37.94408 * 19 18 16 21 21 H 1.09005 * 110.03377 * 95.67850 * 20 19 18 22 22 O 1.42904 * 110.07314 * 217.08000 * 20 19 18 23 23 C 1.53877 * 106.60216 * 336.39064 * 20 19 18 24 24 C 1.46924 * 118.73588 * 53.86080 * 13 12 11 25 25 C 1.53041 * 109.46195 * 295.06912 * 10 9 7 26 26 H 0.96995 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47121 * 59.99807 * 9 7 2 28 28 H 1.08996 * 109.47108 * 300.00198 * 9 7 2 29 29 H 1.09000 * 109.45089 * 55.02986 * 10 9 7 30 30 H 1.08995 * 109.49304 * 61.43308 * 11 10 9 31 31 H 1.08999 * 109.49458 * 301.33727 * 11 10 9 32 32 H 1.08995 * 109.58519 * 185.57866 * 12 11 10 33 33 H 1.09003 * 109.70396 * 65.21725 * 12 11 10 34 34 H 1.08998 * 110.75614 * 321.69649 * 18 16 14 35 35 H 1.08999 * 110.75696 * 84.88484 * 18 16 14 36 36 H 1.08993 * 110.49121 * 279.26999 * 19 18 16 37 37 H 1.09002 * 110.48771 * 156.61644 * 19 18 16 38 38 H 0.96694 * 113.99918 * 297.88037 * 22 20 19 39 39 H 1.08997 * 110.03174 * 119.28538 * 23 20 19 40 40 H 1.08993 * 110.03205 * 240.71648 * 23 20 19 41 41 H 1.09000 * 109.59147 * 65.93165 * 24 13 12 42 42 H 1.09001 * 109.58154 * 186.35110 * 24 13 12 43 43 H 1.08999 * 109.49780 * 298.56807 * 25 10 9 44 44 H 1.09004 * 109.49990 * 58.65790 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4842 -4.9837 0.1263 12 6 2.4846 -6.1433 0.1608 13 7 3.3507 -6.0561 -1.0229 14 6 3.4926 -7.1113 -1.8492 15 8 4.2810 -7.0592 -2.7694 16 6 2.6717 -8.3558 -1.6298 17 1 1.6849 -8.0980 -1.2453 18 6 3.3988 -9.3211 -0.6610 19 6 2.7822 -10.6956 -1.0211 20 6 2.6176 -10.6463 -2.5542 21 1 3.4736 -11.1178 -3.0370 22 8 1.4121 -11.3099 -2.9396 23 6 2.5473 -9.1587 -2.9412 24 6 4.0639 -4.7986 -1.2851 25 6 3.0414 -3.6523 -1.3065 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8902 29 1 2.9290 -3.5551 0.8428 30 1 0.8185 -5.1028 -0.7285 31 1 0.8991 -4.9805 1.0460 32 1 1.9461 -7.0909 0.1505 33 1 3.0920 -6.0780 1.0636 34 1 4.4728 -9.3188 -0.8473 35 1 3.1875 -9.0596 0.3758 36 1 1.8132 -10.8176 -0.5372 37 1 3.4567 -11.5029 -0.7357 38 1 1.3907 -12.2497 -2.7129 39 1 3.3692 -8.9082 -3.6118 40 1 1.5934 -8.9427 -3.4222 41 1 4.7972 -4.6233 -0.4979 42 1 4.5678 -4.8587 -2.2498 43 1 2.3611 -3.7839 -2.1478 44 1 3.5648 -2.7014 -1.4067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335501413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = -136.738799 kcal Electronic energy + Delta-G solvation = -22676.775534 eV Core-core repulsion = 19398.604796 eV Total energy + Delta-G solvation = -3278.170738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.55194 -39.48797 -38.46197 -35.93255 -35.67655 -33.96701 -32.14370 -30.25904 -29.71599 -28.69956 -26.34949 -24.35344 -23.72598 -22.35623 -21.59538 -20.82236 -19.72108 -18.85236 -18.40092 -17.96975 -17.11995 -16.56026 -16.44645 -15.70975 -15.39037 -15.11808 -14.89886 -14.76707 -14.55280 -14.49695 -14.16278 -13.91514 -13.71072 -13.29582 -13.01519 -12.84230 -12.70146 -12.49747 -12.42461 -12.29720 -12.19237 -12.10256 -11.83684 -11.68378 -11.62411 -11.33460 -11.06126 -10.99276 -10.75740 -10.63007 -10.52297 -9.61164 -8.17606 -6.26605 1.39943 1.40424 1.51054 1.56075 2.02271 2.41575 3.16066 3.32568 3.37430 3.59553 3.68709 3.89593 4.03300 4.10565 4.19786 4.23689 4.30839 4.40689 4.42658 4.45777 4.51854 4.58572 4.69564 4.78171 4.82359 4.87670 4.92102 4.99200 5.04145 5.10785 5.16355 5.21494 5.30964 5.32514 5.34213 5.37782 5.55442 5.60885 5.80718 5.89940 6.29158 6.44866 6.90211 6.96357 7.14332 7.41961 8.94156 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036985 B = 0.003267 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.888487 B = 8567.381884 C = 8786.471546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.127 4.127 12 C 0.111 3.889 13 N -0.606 5.606 14 C 0.516 3.484 15 O -0.588 6.588 16 C -0.110 4.110 17 H 0.113 0.887 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.102 3.898 21 H 0.067 0.933 22 O -0.584 6.584 23 C -0.113 4.113 24 C 0.117 3.883 25 C -0.110 4.110 26 H 0.261 0.739 27 H -0.017 1.017 28 H -0.007 1.007 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.395 0.605 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -23.529 1.379 24.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.092 4.092 11 C -0.165 4.165 12 C -0.011 4.011 13 N -0.338 5.338 14 C 0.306 3.694 15 O -0.469 6.469 16 C -0.131 4.131 17 H 0.131 0.869 18 C -0.142 4.142 19 C -0.182 4.182 20 C 0.044 3.956 21 H 0.085 0.915 22 O -0.393 6.393 23 C -0.151 4.151 24 C -0.005 4.005 25 C -0.148 4.148 26 H 0.070 0.930 27 H 0.001 0.999 28 H 0.011 0.989 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.245 0.755 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.218 -22.791 0.697 23.634 hybrid contribution 0.086 1.130 -0.166 1.145 sum 6.303 -21.661 0.531 22.565 Atomic orbital electron populations 1.70095 1.07742 1.27497 1.52289 1.25928 0.95662 1.03142 0.95201 0.85559 0.78878 0.79054 0.78251 1.20279 1.21003 1.18543 1.21684 0.93497 0.92131 1.49387 0.91950 1.19019 0.94034 0.92989 0.94401 1.21042 0.97009 0.94381 0.96772 1.21964 0.97941 0.94214 1.02378 1.22017 0.92123 0.99812 0.87156 1.48273 1.46396 1.12364 1.26751 1.21061 0.82583 0.85126 0.80613 1.90627 1.39649 1.82999 1.33620 1.22192 1.00125 0.92054 0.98725 0.86935 1.22424 0.99419 0.93348 0.99014 1.23062 1.02722 0.97390 0.94983 1.22416 0.86797 0.91744 0.94666 0.91510 1.86527 1.39639 1.28523 1.84596 1.22081 1.02763 0.93779 0.96513 1.21660 0.94228 0.82553 1.02103 1.21821 0.97588 0.97784 0.97599 0.93006 0.99883 0.98862 0.91760 0.93167 0.89908 0.86966 0.89245 0.91477 0.88392 0.89293 0.88893 0.75452 0.91047 0.91486 0.90195 0.90762 0.94308 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.53 -29.27 8.39 25.60 0.21 -29.05 16 8 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 9 C 0.03 1.66 4.45 29.85 0.13 1.80 16 10 C -0.07 -2.80 2.10 -10.77 -0.02 -2.82 16 11 C -0.13 -3.76 5.36 30.67 0.16 -3.59 16 12 C 0.11 2.42 6.31 86.36 0.54 2.97 16 13 N -0.61 -16.61 2.97 -818.07 -2.43 -19.03 16 14 C 0.52 14.60 6.86 87.66 0.60 15.20 16 15 O -0.59 -21.11 15.01 -3.05 -0.05 -21.16 16 16 C -0.11 -2.23 2.28 -10.46 -0.02 -2.26 16 17 H 0.11 2.02 6.50 -2.39 -0.02 2.00 16 18 C -0.10 -1.48 6.25 31.89 0.20 -1.28 16 19 C -0.14 -1.57 6.55 31.67 0.21 -1.36 16 20 C 0.10 1.61 4.26 31.32 0.13 1.75 16 21 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 22 O -0.58 -9.37 13.22 -148.98 -1.97 -11.34 16 23 C -0.11 -2.51 6.13 31.32 0.19 -2.31 16 24 C 0.12 3.62 6.45 86.51 0.56 4.18 16 25 C -0.11 -4.06 5.21 30.82 0.16 -3.90 16 26 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.11 1.77 5.28 -2.39 -0.01 1.76 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.09 8.05 -2.39 -0.02 1.08 16 35 H 0.10 1.01 7.95 -2.39 -0.02 0.99 16 36 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.40 2.53 9.11 -74.06 -0.67 1.85 16 39 H 0.07 1.89 6.78 -2.39 -0.02 1.87 16 40 H 0.07 1.62 7.95 -2.39 -0.02 1.60 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.07 2.46 7.04 -2.39 -0.02 2.45 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.66 6.91 -2.38 -0.02 2.64 16 Total: -1.00 -72.35 341.82 1.70 -70.65 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.31 Total: 11.60 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: 3.52 Total: -20.35 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.14 Total: -75.66 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.02 Total: -32.50 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.35 1.70 -70.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335501413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.084 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds