Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00188 * 2 1 4 4 H 1.48491 * 109.47123 * 239.99778 * 3 2 1 5 5 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47062 * 119.99967 * 3 2 1 7 7 C 1.38951 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99748 * 159.60183 * 7 2 1 9 9 N 1.37097 * 120.00225 * 339.61305 * 7 2 1 10 10 C 1.34777 * 119.99755 * 302.06921 * 9 7 2 11 11 O 1.21291 * 120.00163 * 184.06399 * 10 9 7 12 12 C 1.50699 * 120.00100 * 4.05491 * 10 9 7 13 13 H 1.09005 * 109.46824 * 38.43342 * 12 10 9 14 14 C 1.52998 * 109.47614 * 278.43530 * 12 10 9 15 15 C 1.52995 * 109.47310 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47441 * 59.99688 * 15 14 12 17 17 C 1.53007 * 109.47047 * 300.00225 * 16 15 14 18 18 H 1.09002 * 109.46648 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.46815 * 299.99521 * 17 16 15 20 20 C 1.52995 * 109.47184 * 59.99617 * 17 16 15 21 21 C 1.46498 * 120.00275 * 122.06356 * 9 7 2 22 22 C 1.54269 * 110.02949 * 62.05498 * 21 9 7 23 23 C 1.54888 * 104.19136 * 217.10243 * 22 21 9 24 24 C 1.54885 * 102.75073 * 37.94173 * 23 22 21 25 25 C 1.53867 * 110.03600 * 304.88337 * 21 9 7 26 26 H 0.96999 * 119.99990 * 5.04863 * 1 2 3 27 27 H 1.08997 * 109.47407 * 59.99434 * 14 12 10 28 28 H 1.09005 * 109.46871 * 299.99783 * 14 12 10 29 29 H 1.08997 * 109.47198 * 299.99461 * 15 14 12 30 30 H 1.09004 * 109.47155 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47765 * 180.02562 * 16 15 14 32 32 H 1.08997 * 109.47109 * 59.99719 * 16 15 14 33 33 H 0.96694 * 114.00046 * 300.00025 * 19 17 16 34 34 H 1.09005 * 109.47073 * 60.00052 * 20 17 16 35 35 H 1.08996 * 109.47333 * 180.02562 * 20 17 16 36 36 H 1.09005 * 110.01559 * 183.48886 * 21 9 7 37 37 H 1.08993 * 110.48505 * 335.77729 * 22 21 9 38 38 H 1.08994 * 110.49059 * 98.42795 * 22 21 9 39 39 H 1.08997 * 110.75885 * 279.62420 * 23 22 21 40 40 H 1.09002 * 110.91525 * 156.33012 * 23 22 21 41 41 H 1.08998 * 110.48961 * 203.37539 * 24 23 22 42 42 H 1.09004 * 110.60055 * 80.79151 * 24 23 22 43 43 H 1.08997 * 110.03317 * 238.57136 * 25 21 9 44 44 H 1.09004 * 110.03295 * 359.95203 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0381 -1.2328 -0.3255 9 7 1.3878 -2.3533 0.4146 10 6 0.8610 -2.4262 1.6531 11 8 0.3772 -3.4667 2.0461 12 6 0.8734 -1.2150 2.5497 13 1 0.6750 -0.3221 1.9568 14 6 2.2438 -1.0891 3.2181 15 6 2.2565 0.1409 4.1279 16 6 1.1770 -0.0078 5.2018 17 6 -0.1936 -0.1337 4.5333 18 1 -0.9627 -0.2392 5.2985 19 8 -0.4534 1.0367 3.7556 20 6 -0.2062 -1.3637 3.6235 21 6 1.2966 -3.5028 -0.4890 22 6 2.7099 -4.0082 -0.8454 23 6 2.5985 -4.4311 -2.3312 24 6 1.6671 -3.3461 -2.9265 25 6 0.6335 -3.0819 -1.8121 26 1 -0.4850 0.8368 -0.0739 27 1 3.0129 -0.9827 2.4531 28 1 2.4423 -1.9820 3.8110 29 1 2.0583 1.0336 3.5347 30 1 3.2327 0.2303 4.6045 31 1 1.1856 0.8687 5.8497 32 1 1.3751 -0.9005 5.7950 33 1 -0.4604 1.8563 4.2687 34 1 -0.0080 -2.2564 4.2168 35 1 -1.1824 -1.4531 3.1470 36 1 0.7210 -4.3011 -0.0202 37 1 3.4413 -3.2083 -0.7302 38 1 2.9772 -4.8632 -0.2245 39 1 2.1462 -5.4189 -2.4189 40 1 3.5746 -4.4105 -2.8159 41 1 1.1734 -3.7179 -3.8243 42 1 2.2285 -2.4387 -3.1491 43 1 -0.2633 -3.6764 -1.9860 44 1 0.3788 -2.0225 -1.7817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335820670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -106.178740 kcal Electronic energy + Delta-G solvation = -24496.274551 eV Core-core repulsion = 21219.428997 eV Total energy + Delta-G solvation = -3276.845554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39608 -38.04962 -36.45457 -34.37695 -33.91508 -31.37991 -30.13086 -29.19468 -27.84122 -26.87219 -24.67379 -22.74245 -21.83309 -20.04771 -19.86506 -19.12681 -18.66341 -16.69618 -16.23785 -15.61419 -15.31052 -14.80369 -14.51717 -14.30207 -14.02995 -13.41779 -13.39740 -13.20734 -12.58293 -12.36575 -12.20454 -11.91366 -11.74079 -11.50925 -11.17230 -11.06150 -10.93483 -10.79202 -10.56725 -10.47840 -10.41352 -10.37534 -10.23664 -10.19111 -9.93302 -9.82961 -9.62955 -9.51078 -9.13320 -8.55044 -7.97575 -7.08127 -6.29512 -4.13048 3.18296 3.27205 3.27590 4.10673 4.27186 4.73046 4.87935 4.97882 5.22905 5.25086 5.39758 5.44049 5.48905 5.64988 5.85800 5.95712 5.97544 6.08123 6.16105 6.21404 6.23657 6.28055 6.34347 6.37378 6.41298 6.51887 6.54850 6.59914 6.63481 6.73325 6.79380 6.83962 6.91922 6.94321 7.04687 7.17458 7.25763 7.47015 7.51197 7.66345 8.10875 8.20858 8.74153 9.05530 9.74090 10.17611 10.73867 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.007578 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.922859 B = 3694.180698 C = 4390.974429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.077 0.923 9 N -0.445 5.445 10 C 0.519 3.481 11 O -0.618 6.618 12 C -0.097 4.097 13 H 0.137 0.863 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.149 4.149 17 C 0.107 3.893 18 H 0.045 0.955 19 O -0.552 6.552 20 C -0.090 4.090 21 C 0.133 3.867 22 C -0.127 4.127 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.125 4.125 26 H 0.273 0.727 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.363 0.637 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 1.272 3.754 5.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.095 0.905 9 N -0.164 5.164 10 C 0.310 3.690 11 O -0.504 6.504 12 C -0.118 4.118 13 H 0.154 0.846 14 C -0.139 4.139 15 C -0.149 4.149 16 C -0.187 4.187 17 C 0.048 3.952 18 H 0.063 0.937 19 O -0.355 6.355 20 C -0.128 4.128 21 C 0.029 3.971 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.163 4.163 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.208 0.792 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.729 0.434 3.485 4.448 hybrid contribution 0.354 1.344 0.344 1.432 sum 3.084 1.779 3.829 5.228 Atomic orbital electron populations 1.69909 1.06061 1.28283 1.43705 1.25502 0.94971 0.99645 0.94342 0.86497 0.79782 0.82231 0.79181 1.20081 1.20852 1.19135 1.18887 0.95683 0.83850 1.48882 0.90541 1.43327 1.51983 1.11811 1.09318 1.20491 0.77974 0.88248 0.82303 1.90459 1.51564 1.32660 1.75704 1.21280 0.93650 1.01363 0.95525 0.84585 1.21357 0.98029 0.96386 0.98173 1.21430 0.96960 0.99723 0.96791 1.22248 0.96867 1.01402 0.98199 1.21826 0.93920 0.86828 0.92631 0.93748 1.86726 1.94343 1.16118 1.38329 1.21319 1.00216 0.94309 0.96908 1.21553 0.94343 0.90414 0.90817 1.22636 0.99055 1.00016 0.94849 1.22420 0.98824 0.98257 0.96395 1.22261 0.97457 0.98291 0.97373 1.22371 0.96342 1.04034 0.93571 0.91699 0.90673 0.93447 0.91557 0.92892 0.92659 0.91451 0.79199 0.91172 0.91805 0.90876 0.90769 0.93067 0.92477 0.92621 0.93242 0.91761 0.93815 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.05 11.90 55.50 0.66 -21.39 16 2 C 0.06 1.55 3.19 -17.47 -0.06 1.50 16 3 Si 0.90 19.36 29.60 -169.99 -5.03 14.33 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.34 -8.46 6.05 -14.93 -0.09 -8.56 16 8 H 0.08 1.86 7.03 -52.49 -0.37 1.49 16 9 N -0.45 -11.07 2.32 -106.54 -0.25 -11.32 16 10 C 0.52 13.45 6.42 -10.99 -0.07 13.38 16 11 O -0.62 -17.25 15.42 5.55 0.09 -17.16 16 12 C -0.10 -2.23 1.54 -91.77 -0.14 -2.37 16 13 H 0.14 3.37 3.72 -51.93 -0.19 3.18 16 14 C -0.10 -2.04 5.11 -26.73 -0.14 -2.17 16 15 C -0.11 -1.88 5.78 -26.74 -0.15 -2.03 16 16 C -0.15 -2.20 5.64 -26.73 -0.15 -2.35 16 17 C 0.11 1.78 3.77 -26.73 -0.10 1.68 16 18 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 19 O -0.55 -9.66 11.97 -35.23 -0.42 -10.08 16 20 C -0.09 -1.87 4.43 -26.73 -0.12 -1.99 16 21 C 0.13 3.02 3.29 -66.82 -0.22 2.80 16 22 C -0.13 -2.46 6.42 -25.07 -0.16 -2.62 16 23 C -0.12 -1.99 6.91 -24.74 -0.17 -2.16 16 24 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 25 C -0.12 -2.65 6.25 -25.62 -0.16 -2.81 16 26 H 0.27 6.92 8.32 -40.82 -0.34 6.58 16 27 H 0.07 1.58 7.24 -51.93 -0.38 1.21 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.36 4.49 9.08 45.56 0.41 4.91 16 34 H 0.07 1.44 7.89 -51.93 -0.41 1.03 16 35 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.07 1.78 6.97 -51.93 -0.36 1.42 16 37 H 0.07 1.50 6.67 -51.93 -0.35 1.15 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.10 2.37 7.01 -51.93 -0.36 2.01 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.97 333.46 -8.44 -37.42 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -6.61 Total: 13.11 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.90 Total: -9.92 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.41 Total: -32.71 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.34 Total: -27.24 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.97 -8.44 -37.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335820670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.760 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds