Wall clock time and date at job start Tue Mar 31 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47082 * 275.34722 * 3 2 1 5 5 H 1.48499 * 109.46893 * 35.34655 * 3 2 1 6 6 H 1.48499 * 109.47024 * 155.34933 * 3 2 1 7 7 C 1.38950 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00060 * 341.12191 * 7 2 1 9 9 N 1.37100 * 120.00149 * 161.11870 * 7 2 1 10 10 C 1.34781 * 119.99794 * 315.38262 * 9 7 2 11 11 O 1.21294 * 120.00065 * 3.42211 * 10 9 7 12 12 C 1.50696 * 119.99818 * 183.42024 * 10 9 7 13 13 H 1.09004 * 109.47388 * 318.35807 * 12 10 9 14 14 C 1.53003 * 109.46981 * 78.35726 * 12 10 9 15 15 C 1.53009 * 109.47198 * 180.02562 * 14 12 10 16 16 C 1.53006 * 109.46706 * 299.99782 * 15 14 12 17 17 C 1.53003 * 109.47115 * 60.00167 * 16 15 14 18 18 H 1.09000 * 109.47088 * 59.99346 * 17 16 15 19 19 O 1.42894 * 109.47296 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47217 * 299.99879 * 17 16 15 21 21 C 1.46495 * 120.00072 * 135.37525 * 9 7 2 22 22 C 1.54889 * 110.59665 * 49.34626 * 21 9 7 23 23 C 1.54898 * 102.74580 * 203.32350 * 22 21 9 24 24 C 1.54262 * 104.19784 * 37.94168 * 23 22 21 25 25 C 1.53878 * 106.59958 * 336.38851 * 24 23 22 26 26 H 0.97000 * 120.00372 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47371 * 299.99821 * 14 12 10 28 28 H 1.08993 * 109.47378 * 60.00109 * 14 12 10 29 29 H 1.08992 * 109.47133 * 180.02562 * 15 14 12 30 30 H 1.08993 * 109.46995 * 59.99717 * 15 14 12 31 31 H 1.08997 * 109.46976 * 300.00062 * 16 15 14 32 32 H 1.09001 * 109.46580 * 179.97438 * 16 15 14 33 33 H 0.96701 * 113.99767 * 300.00372 * 19 17 16 34 34 H 1.09004 * 109.47114 * 299.99896 * 20 17 16 35 35 H 1.08993 * 109.47676 * 179.97438 * 20 17 16 36 36 H 1.09004 * 110.43598 * 171.96074 * 21 9 7 37 37 H 1.08996 * 110.75757 * 85.00757 * 22 21 9 38 38 H 1.09002 * 110.75734 * 321.63325 * 22 21 9 39 39 H 1.09002 * 110.48227 * 279.25782 * 23 22 21 40 40 H 1.09004 * 110.48430 * 156.61804 * 23 22 21 41 41 H 1.08999 * 110.03123 * 95.67121 * 24 23 22 42 42 H 1.08998 * 110.03411 * 217.05678 * 24 23 22 43 43 H 1.09003 * 110.02987 * 119.28364 * 25 24 23 44 44 H 1.08995 * 110.03565 * 240.71907 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3826 2.1117 -1.3940 5 1 1.5065 2.6174 0.8100 6 1 3.5976 1.4102 0.5839 7 6 2.0089 -1.2033 -0.0005 8 1 1.5125 -2.1136 0.3017 9 7 3.3245 -1.2352 -0.3848 10 6 3.7221 -0.5633 -1.4835 11 8 2.9292 0.1194 -2.0969 12 6 5.1518 -0.6605 -1.9498 13 1 5.8187 -0.6166 -1.0887 14 6 5.3586 -1.9845 -2.6881 15 6 6.8104 -2.0835 -3.1610 16 6 7.1197 -0.9196 -4.1048 17 6 6.9129 0.4045 -3.3665 18 1 7.5794 0.4481 -2.5051 19 8 7.2023 1.4915 -4.2478 20 6 5.4612 0.5034 -2.8936 21 6 4.2982 -1.9992 0.3989 22 6 3.7748 -3.4312 0.6718 23 6 4.5632 -3.8477 1.9383 24 6 4.6322 -2.5582 2.7822 25 6 4.4638 -1.3828 1.8035 26 1 -0.4851 0.8400 0.0004 27 1 5.1386 -2.8137 -2.0156 28 1 4.6919 -2.0284 -3.5492 29 1 6.9576 -3.0265 -3.6873 30 1 7.4768 -2.0398 -2.2997 31 1 6.4532 -0.9633 -4.9661 32 1 8.1541 -0.9899 -4.4413 33 1 8.1079 1.4923 -4.5871 34 1 4.7947 0.4597 -3.7549 35 1 5.3140 1.4464 -2.3672 36 1 5.2577 -2.0356 -0.1172 37 1 4.0068 -4.0928 -0.1627 38 1 2.7031 -3.4194 0.8704 39 1 5.5654 -4.1828 1.6708 40 1 4.0303 -4.6296 2.4794 41 1 3.8278 -2.5498 3.5177 42 1 5.5975 -2.4917 3.2841 43 1 3.5777 -0.8041 2.0640 44 1 5.3476 -0.7455 1.8297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335820671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:57 Heat of formation + Delta-G solvation = -99.417918 kcal Electronic energy + Delta-G solvation = -24174.918239 eV Core-core repulsion = 20898.365856 eV Total energy + Delta-G solvation = -3276.552383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.92941 -38.28227 -36.99541 -35.31652 -33.61086 -31.91348 -30.67926 -29.39151 -28.21487 -27.09076 -25.19622 -22.72850 -22.19621 -20.39194 -20.20650 -19.75064 -18.84789 -17.42728 -16.66913 -16.13165 -15.45749 -15.21517 -14.68939 -14.44077 -14.32038 -13.93524 -13.44786 -13.29602 -13.18716 -12.92153 -12.62175 -12.34640 -12.17677 -11.88541 -11.56570 -11.41179 -11.15511 -11.02259 -10.83961 -10.74167 -10.65827 -10.58391 -10.44241 -10.29596 -10.10581 -9.96495 -9.88131 -9.78531 -9.65117 -8.49953 -8.34285 -7.48737 -6.13194 -3.91421 3.34574 3.50522 3.70966 3.86147 4.10439 4.52772 4.60469 4.77992 4.83550 5.04223 5.08934 5.13487 5.19902 5.27376 5.36576 5.39485 5.46804 5.57505 5.60827 5.65834 5.70953 5.86149 5.93795 5.97847 6.02166 6.06567 6.09335 6.13038 6.17272 6.26588 6.30611 6.33320 6.34244 6.46857 6.55625 6.67684 6.72360 6.84654 6.97865 7.67534 7.91697 8.08232 8.85468 8.99660 9.50116 9.89887 10.92087 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014253 B = 0.008136 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.030883 B = 3440.549842 C = 4667.386437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.093 3.907 3 Si 0.906 3.094 4 H -0.256 1.256 5 H -0.311 1.311 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.457 5.457 10 C 0.457 3.543 11 O -0.542 6.542 12 C -0.101 4.101 13 H 0.080 0.920 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.150 4.150 17 C 0.105 3.895 18 H 0.052 0.948 19 O -0.566 6.566 20 C -0.093 4.093 21 C 0.125 3.875 22 C -0.128 4.128 23 C -0.122 4.122 24 C -0.118 4.118 25 C -0.136 4.136 26 H 0.270 0.730 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.372 0.628 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.083 0.917 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.593 -5.490 -1.146 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.115 4.115 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.240 1.240 6 H -0.206 1.206 7 C -0.469 4.469 8 H 0.113 0.887 9 N -0.178 5.178 10 C 0.247 3.753 11 O -0.423 6.423 12 C -0.123 4.123 13 H 0.098 0.902 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.188 4.188 17 C 0.047 3.953 18 H 0.070 0.930 19 O -0.371 6.371 20 C -0.131 4.131 21 C 0.020 3.980 22 C -0.166 4.166 23 C -0.160 4.160 24 C -0.156 4.156 25 C -0.175 4.175 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.218 0.782 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.360 -4.919 -1.318 16.182 hybrid contribution 1.010 0.669 0.078 1.214 sum 16.370 -4.250 -1.240 16.958 Atomic orbital electron populations 1.69746 1.06809 1.27989 1.45902 1.25309 0.94834 0.99243 0.92145 0.86429 0.79085 0.82548 0.78220 1.18207 1.24030 1.20562 1.18681 0.83526 0.95622 1.49073 0.88744 1.43654 1.07984 1.45238 1.20923 1.20232 0.89098 0.84417 0.81596 1.90530 1.54555 1.40951 1.56304 1.21195 0.96613 0.95954 0.98496 0.90159 1.21535 0.96291 0.96203 1.00684 1.21484 0.96882 0.97793 0.98989 1.22275 1.01350 0.95524 0.99665 1.21862 0.97295 0.85128 0.91055 0.93025 1.86572 1.34728 1.49429 1.66396 1.21245 0.93686 0.98082 1.00076 1.22066 0.92188 0.91863 0.91838 1.22772 1.01996 0.95451 0.96427 1.22293 0.99613 0.97239 0.96817 1.22041 1.00722 0.94835 0.97993 1.22494 1.02189 0.97735 0.95036 0.91977 0.91016 0.91127 0.91552 0.91896 0.90980 0.92125 0.78206 0.90073 0.91422 0.90449 0.92341 0.89449 0.92322 0.92089 0.91971 0.92725 0.89806 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.80 13.96 55.50 0.77 -26.03 16 2 C 0.09 2.75 4.86 -17.47 -0.08 2.67 16 3 Si 0.91 24.73 24.84 -169.99 -4.22 20.50 16 4 H -0.26 -7.42 6.35 56.52 0.36 -7.06 16 5 H -0.31 -8.36 7.11 56.52 0.40 -7.96 16 6 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.34 -9.46 8.29 -14.93 -0.12 -9.58 16 8 H 0.10 2.71 6.54 -52.49 -0.34 2.37 16 9 N -0.46 -10.66 2.15 -105.97 -0.23 -10.89 16 10 C 0.46 10.78 5.20 -10.99 -0.06 10.72 16 11 O -0.54 -15.19 11.50 5.55 0.06 -15.12 16 12 C -0.10 -1.79 1.65 -91.77 -0.15 -1.94 16 13 H 0.08 1.30 6.73 -51.93 -0.35 0.95 16 14 C -0.11 -1.61 4.91 -26.72 -0.13 -1.74 16 15 C -0.11 -1.27 5.92 -26.72 -0.16 -1.42 16 16 C -0.15 -1.69 5.55 -26.73 -0.15 -1.84 16 17 C 0.11 1.41 3.47 -26.73 -0.09 1.32 16 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 19 O -0.57 -7.61 13.32 -35.23 -0.47 -8.08 16 20 C -0.09 -1.65 4.30 -26.73 -0.12 -1.77 16 21 C 0.13 2.28 2.56 -66.27 -0.17 2.11 16 22 C -0.13 -2.11 6.36 -24.73 -0.16 -2.27 16 23 C -0.12 -1.62 6.83 -25.07 -0.17 -1.79 16 24 C -0.12 -1.67 6.80 -25.61 -0.17 -1.85 16 25 C -0.14 -2.39 6.44 -25.61 -0.16 -2.55 16 26 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 27 H 0.07 1.03 6.92 -51.93 -0.36 0.67 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.37 3.05 9.08 45.56 0.41 3.46 16 34 H 0.08 1.60 7.91 -51.93 -0.41 1.19 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.23 4.81 -51.93 -0.25 0.98 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.68 6.18 -51.93 -0.32 1.36 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.75 7.35 -51.93 -0.38 1.37 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 329.14 15.07 4.96 4.96 Total: -1.00 -33.86 329.14 -7.70 -41.56 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.67 Total: 3.02 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.90 Total: -9.92 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.55 Total: -36.92 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.41 Total: -23.21 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.22 Total: 20.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.86 -7.70 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335820671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.859 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds