Wall clock time and date at job start Tue Mar 31 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48499 * 109.47004 * 239.99851 * 3 2 1 5 5 H 1.48500 * 109.47118 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46869 * 120.00368 * 3 2 1 7 7 C 1.38957 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99458 * 201.17893 * 7 2 1 9 9 N 1.37094 * 119.99906 * 21.17751 * 7 2 1 10 10 C 1.34774 * 120.00339 * 39.28505 * 9 7 2 11 11 O 1.21290 * 119.99875 * 5.45565 * 10 9 7 12 12 C 1.50703 * 120.00052 * 185.45732 * 10 9 7 13 13 H 1.09001 * 109.46743 * 40.39267 * 12 10 9 14 14 C 1.53000 * 109.47053 * 280.39465 * 12 10 9 15 15 C 1.52994 * 109.47168 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.47467 * 59.99896 * 15 14 12 17 17 C 1.53002 * 109.46648 * 300.00145 * 16 15 14 18 18 H 1.08999 * 109.46971 * 299.99563 * 17 16 15 19 19 O 1.42901 * 109.46931 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.47451 * 60.00272 * 17 16 15 21 21 C 1.46501 * 119.99630 * 219.28680 * 9 7 2 22 22 C 1.54269 * 110.03674 * 57.98122 * 21 9 7 23 23 C 1.54886 * 104.19654 * 217.10754 * 22 21 9 24 24 C 1.54887 * 102.75080 * 37.94051 * 23 22 21 25 25 C 1.53876 * 110.03074 * 300.81573 * 21 9 7 26 26 H 0.96998 * 119.99950 * 4.64210 * 1 2 3 27 27 H 1.08998 * 109.47120 * 59.99554 * 14 12 10 28 28 H 1.09006 * 109.47011 * 300.00450 * 14 12 10 29 29 H 1.09004 * 109.47454 * 179.97438 * 15 14 12 30 30 H 1.08999 * 109.47263 * 299.99652 * 15 14 12 31 31 H 1.08999 * 109.47078 * 59.99643 * 16 15 14 32 32 H 1.08997 * 109.47254 * 180.02562 * 16 15 14 33 33 H 0.96701 * 114.00266 * 59.99388 * 19 17 16 34 34 H 1.08995 * 109.47232 * 59.99361 * 20 17 16 35 35 H 1.08997 * 109.47276 * 180.02562 * 20 17 16 36 36 H 1.09000 * 110.01671 * 179.42801 * 21 9 7 37 37 H 1.09003 * 110.48229 * 335.78660 * 22 21 9 38 38 H 1.08996 * 110.48457 * 98.42501 * 22 21 9 39 39 H 1.08997 * 110.75868 * 279.62630 * 23 22 21 40 40 H 1.09004 * 110.75773 * 156.25678 * 23 22 21 41 41 H 1.08997 * 110.48993 * 203.37764 * 24 23 22 42 42 H 1.09005 * 110.48773 * 80.73663 * 24 23 22 43 43 H 1.09009 * 110.03063 * 238.57165 * 25 21 9 44 44 H 1.09000 * 110.03368 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0341 -1.2351 0.3374 9 7 1.3927 -2.3504 -0.4300 10 6 0.5652 -2.3134 -1.4931 11 8 0.4418 -1.2886 -2.1301 12 6 -0.2069 -3.5452 -1.8902 13 1 -0.5709 -4.0499 -0.9954 14 6 0.7075 -4.4900 -2.6725 15 6 -0.0764 -5.7403 -3.0762 16 6 -1.2633 -5.3369 -3.9534 17 6 -2.1777 -4.3921 -3.1711 18 1 -2.5421 -4.8971 -2.2765 19 8 -3.2860 -4.0148 -3.9905 20 6 -1.3938 -3.1417 -2.7674 21 6 1.6339 -3.6163 0.2668 22 6 1.2441 -3.4839 1.7536 23 6 2.3106 -4.3213 2.5020 24 6 3.6031 -4.0217 1.7027 25 6 3.1338 -3.9582 0.2346 26 1 -0.4850 0.8373 -0.0680 27 1 1.5533 -4.7770 -2.0477 28 1 1.0717 -3.9851 -3.5673 29 1 0.5749 -6.4133 -3.6339 30 1 -0.4409 -6.2453 -2.1817 31 1 -0.8989 -4.8319 -4.8480 32 1 -1.8221 -6.2276 -4.2407 33 1 -3.8290 -4.7590 -4.2847 34 1 -1.0294 -2.6368 -3.6620 35 1 -2.0451 -2.4688 -2.2097 36 1 1.0587 -4.4152 -0.2011 37 1 1.2881 -2.4412 2.0680 38 1 0.2485 -3.8933 1.9248 39 1 2.0677 -5.3830 2.4597 40 1 2.4091 -3.9874 3.5349 41 1 4.3291 -4.8236 1.8369 42 1 4.0281 -3.0658 2.0090 43 1 3.2864 -4.9236 -0.2483 44 1 3.6822 -3.1826 -0.2999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335820672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:01 Heat of formation + Delta-G solvation = -101.819311 kcal Electronic energy + Delta-G solvation = -24083.152847 eV Core-core repulsion = 20806.496332 eV Total energy + Delta-G solvation = -3276.656515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55578 -38.07227 -36.59706 -35.10379 -33.22949 -31.59890 -30.34114 -29.18234 -28.05508 -26.81232 -24.99256 -22.67892 -22.02606 -20.13215 -20.05665 -19.65277 -18.73935 -17.13022 -16.23925 -15.89191 -15.23669 -14.80323 -14.52348 -14.32197 -14.14491 -13.84844 -13.49582 -13.14574 -12.76818 -12.68268 -12.42059 -12.15608 -11.86253 -11.42530 -11.19857 -11.00224 -10.87481 -10.77701 -10.71768 -10.58830 -10.50006 -10.46618 -10.40840 -10.23338 -10.08846 -10.06243 -10.01882 -9.68723 -9.52573 -8.64236 -7.90106 -7.01505 -6.02997 -3.72935 3.36539 3.44352 3.48158 4.19372 4.40944 4.44517 4.87141 4.95404 5.06677 5.19518 5.24696 5.26427 5.38332 5.45940 5.52867 5.60497 5.65439 5.75523 5.82584 5.85269 5.92733 6.04197 6.09111 6.14789 6.19748 6.24470 6.27805 6.29729 6.36734 6.45068 6.45273 6.50434 6.52887 6.63078 6.80987 6.83966 6.93073 7.00178 7.22308 7.71507 7.82223 8.35171 9.16337 9.30262 9.78747 10.42232 11.05336 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.007331 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.698267 B = 3818.574078 C = 5155.608473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.449 5.449 10 C 0.485 3.515 11 O -0.538 6.538 12 C -0.097 4.097 13 H 0.075 0.925 14 C -0.112 4.112 15 C -0.114 4.114 16 C -0.149 4.149 17 C 0.104 3.896 18 H 0.051 0.949 19 O -0.567 6.567 20 C -0.086 4.086 21 C 0.127 3.873 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.131 4.131 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.369 0.631 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -13.655 -1.028 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.464 4.464 8 H 0.094 0.906 9 N -0.170 5.170 10 C 0.272 3.728 11 O -0.416 6.416 12 C -0.119 4.119 13 H 0.093 0.907 14 C -0.150 4.150 15 C -0.151 4.151 16 C -0.187 4.187 17 C 0.045 3.955 18 H 0.069 0.931 19 O -0.371 6.371 20 C -0.124 4.124 21 C 0.022 3.978 22 C -0.166 4.166 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.170 4.170 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.215 0.785 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.045 -12.383 -1.194 12.441 hybrid contribution 0.093 0.164 0.001 0.189 sum 0.048 -12.219 -1.193 12.277 Atomic orbital electron populations 1.69873 1.06446 1.27686 1.42516 1.25063 0.94618 0.99115 0.94992 0.86444 0.79494 0.82853 0.78261 1.20227 1.21402 1.20562 1.18774 0.95601 0.85198 1.46874 0.90550 1.43391 1.43249 1.05965 1.24433 1.19600 0.83453 0.88301 0.81486 1.90502 1.65182 1.32842 1.53048 1.21157 0.95689 0.96792 0.98247 0.90726 1.21593 0.97864 0.94976 1.00549 1.21480 0.96607 0.97695 0.99364 1.22265 0.97595 0.99031 0.99829 1.21917 0.85879 0.95961 0.91693 0.93145 1.86585 1.42074 1.37240 1.71224 1.21167 0.95370 0.95305 1.00572 1.21763 0.94492 0.88608 0.92958 1.22671 0.96739 1.01993 0.95162 1.22441 0.96007 0.99053 0.98567 1.22263 0.96873 1.00781 0.95596 1.22478 0.97422 1.00576 0.96517 0.92687 0.91287 0.91539 0.91878 0.91995 0.91165 0.92361 0.78466 0.90694 0.90996 0.91104 0.89122 0.93064 0.92528 0.92374 0.92920 0.91637 0.92971 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.66 11.67 55.50 0.65 -24.01 16 2 C 0.07 2.03 4.29 -17.47 -0.07 1.95 16 3 Si 0.90 22.23 29.61 -169.99 -5.03 17.20 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.34 -9.05 7.42 -14.93 -0.11 -9.16 16 8 H 0.08 1.99 7.20 -52.49 -0.38 1.61 16 9 N -0.45 -10.85 2.48 -106.54 -0.26 -11.11 16 10 C 0.48 12.12 6.03 -10.99 -0.07 12.05 16 11 O -0.54 -15.92 13.74 5.55 0.08 -15.84 16 12 C -0.10 -1.87 1.66 -91.77 -0.15 -2.02 16 13 H 0.07 1.38 6.93 -51.93 -0.36 1.02 16 14 C -0.11 -1.77 4.87 -26.73 -0.13 -1.90 16 15 C -0.11 -1.40 5.92 -26.73 -0.16 -1.56 16 16 C -0.15 -1.86 5.55 -26.73 -0.15 -2.00 16 17 C 0.10 1.55 3.47 -26.73 -0.09 1.45 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 19 O -0.57 -8.33 13.32 -35.23 -0.47 -8.80 16 20 C -0.09 -1.67 4.32 -26.73 -0.12 -1.79 16 21 C 0.13 2.43 2.49 -66.81 -0.17 2.26 16 22 C -0.13 -2.35 6.41 -25.07 -0.16 -2.51 16 23 C -0.12 -1.81 6.91 -24.74 -0.17 -1.98 16 24 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 25 C -0.13 -2.22 6.17 -25.61 -0.16 -2.38 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.37 3.46 9.08 45.56 0.41 3.87 16 34 H 0.07 1.59 7.90 -51.93 -0.41 1.18 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.07 1.23 4.61 -51.93 -0.24 1.00 16 37 H 0.09 2.00 7.04 -51.93 -0.37 1.63 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 44 H 0.07 1.44 6.99 -51.93 -0.36 1.08 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -32.80 334.90 -8.54 -41.34 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.67 Total: 5.70 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.88 Total: -9.53 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.38 Total: -35.12 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.39 Total: -24.64 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.80 -8.54 -41.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335820672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.476 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds