Wall clock time and date at job start Tue Mar 31 2020 07:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.52055 * 2 1 4 4 O 1.21278 * 120.00296 * 113.30671 * 3 2 1 5 5 N 1.34781 * 120.00213 * 293.31116 * 3 2 1 6 6 C 1.46916 * 120.63214 * 184.77590 * 5 3 2 7 7 C 1.52766 * 109.01068 * 233.58325 * 6 5 3 8 8 C 1.53040 * 109.38166 * 305.59059 * 7 6 5 9 9 C 1.50703 * 109.46016 * 181.26037 * 8 7 6 10 10 H 1.08001 * 119.99474 * 239.92802 * 9 8 7 11 11 C 1.37872 * 119.99931 * 59.93131 * 9 8 7 12 12 N 1.31516 * 120.00226 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47256 * 90.00017 * 13 11 9 15 15 H 1.48497 * 109.46761 * 209.99578 * 13 11 9 16 16 H 1.48497 * 109.47270 * 329.99554 * 13 11 9 17 17 C 1.53044 * 109.53820 * 61.23611 * 8 7 6 18 18 C 1.46923 * 120.62679 * 5.05841 * 5 3 2 19 19 C 1.53309 * 109.55782 * 239.87283 * 2 1 3 20 20 C 1.53190 * 108.96225 * 183.10818 * 19 2 1 21 21 C 1.53089 * 109.21173 * 56.95223 * 20 19 2 22 22 O 1.42903 * 109.41950 * 302.35850 * 21 20 19 23 23 C 1.42901 * 114.09306 * 61.15818 * 22 21 20 24 24 H 1.08997 * 109.47439 * 284.33395 * 1 2 3 25 25 H 1.09001 * 109.47049 * 44.33761 * 1 2 3 26 26 H 1.09002 * 109.46545 * 164.33293 * 1 2 3 27 27 H 1.09006 * 109.58692 * 353.41594 * 6 5 3 28 28 H 1.08996 * 109.58766 * 113.84124 * 6 5 3 29 29 H 1.09001 * 109.56651 * 185.54874 * 7 6 5 30 30 H 1.09005 * 109.35607 * 65.49931 * 7 6 5 31 31 H 1.08999 * 109.44871 * 301.22452 * 8 7 6 32 32 H 0.96999 * 119.99513 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.49598 * 178.68226 * 17 8 7 34 34 H 1.09001 * 109.52104 * 58.60502 * 17 8 7 35 35 H 1.09010 * 109.58266 * 246.15580 * 18 5 3 36 36 H 1.09001 * 109.58978 * 6.57896 * 18 5 3 37 37 H 1.08999 * 109.62606 * 63.23866 * 19 2 1 38 38 H 1.08994 * 109.53092 * 302.92190 * 19 2 1 39 39 H 1.09000 * 109.52147 * 297.01698 * 20 19 2 40 40 H 1.08999 * 109.51983 * 176.89187 * 20 19 2 41 41 H 1.09005 * 109.48038 * 62.34293 * 21 20 19 42 42 H 1.09004 * 109.47502 * 182.36077 * 21 20 19 43 43 H 1.08999 * 109.48447 * 58.83150 * 23 22 21 44 44 H 1.09001 * 109.47505 * 178.84659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.6279 1.8531 0.9646 5 7 1.8234 2.2099 -1.0719 6 6 2.3973 3.5611 -1.1304 7 6 1.2815 4.5636 -1.4198 8 6 0.5358 4.1415 -2.6878 9 6 -0.5456 5.1461 -2.9922 10 1 -1.5783 4.8326 -3.0310 11 6 -0.2163 6.4652 -3.2212 12 7 1.0413 6.8470 -3.1736 13 14 -1.5569 7.7105 -3.5979 14 1 -2.0449 8.3110 -2.3304 15 1 -1.0090 8.7781 -4.4726 16 1 -2.6822 7.0324 -4.2899 17 6 -0.0939 2.7628 -2.4763 18 6 1.0110 1.7379 -2.2014 19 6 2.0433 -0.7251 -1.2495 20 6 3.5731 -0.7854 -1.1969 21 6 4.0057 -1.4792 0.0974 22 8 3.4695 -0.7722 1.2175 23 6 2.0416 -0.7242 1.2480 24 1 -0.3634 0.2544 0.9956 25 1 -0.3633 0.7350 -0.7182 26 1 -0.3632 -0.9895 -0.2775 27 1 2.8640 3.8016 -0.1751 28 1 3.1418 3.6078 -1.9252 29 1 1.7100 5.5556 -1.5627 30 1 0.5875 4.5842 -0.5794 31 1 1.2354 4.0970 -3.5224 32 1 1.2727 7.7751 -3.3344 33 1 -0.6444 2.4731 -3.3715 34 1 -0.7753 2.8000 -1.6263 35 1 1.6401 1.6329 -3.0854 36 1 0.5632 0.7758 -1.9527 37 1 1.7302 -0.1831 -2.1418 38 1 1.6392 -1.7370 -1.2753 39 1 3.9785 0.2261 -1.2211 40 1 3.9450 -1.3475 -2.0535 41 1 3.6338 -2.5038 0.1024 42 1 5.0939 -1.4871 0.1592 43 1 1.6441 -1.7389 1.2681 44 1 1.7150 -0.1881 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335978310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:26 Heat of formation + Delta-G solvation = -81.024049 kcal Electronic energy + Delta-G solvation = -24100.525535 eV Core-core repulsion = 20824.770770 eV Total energy + Delta-G solvation = -3275.754765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91165 -38.36457 -36.64513 -34.93061 -33.28667 -32.17308 -31.00744 -30.11500 -27.01797 -26.35495 -25.22164 -23.74980 -22.58337 -22.04003 -21.17280 -19.45710 -18.19584 -16.54942 -16.38540 -16.13060 -15.85667 -15.16047 -14.92161 -14.60339 -14.38798 -14.29640 -13.79548 -13.25986 -12.86742 -12.84277 -12.59097 -12.55548 -12.42927 -12.14108 -11.87234 -11.76881 -11.42804 -11.21629 -11.07380 -10.93428 -10.67384 -10.63519 -10.41814 -10.31874 -10.07545 -9.56787 -9.48549 -9.34482 -8.96074 -8.87096 -8.37567 -7.92939 -6.02400 -4.09429 3.08434 3.28194 3.35451 3.37555 3.48070 3.94471 4.40482 4.50534 4.56227 4.68528 4.84548 4.98122 5.15133 5.27121 5.27873 5.35433 5.43025 5.47883 5.56137 5.64977 5.68770 5.73057 5.74870 5.81101 5.91050 6.03407 6.11400 6.12691 6.17776 6.31242 6.42649 6.49597 6.60783 6.87305 6.97673 7.21196 7.24262 7.35477 7.69432 7.91697 7.99248 8.07490 8.39482 8.68649 8.93946 9.55841 11.02890 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.004439 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.198583 B = 6306.662577 C = 6463.124540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.525 3.475 4 O -0.540 6.540 5 N -0.599 5.599 6 C 0.110 3.890 7 C -0.123 4.123 8 C 0.050 3.950 9 C -0.514 4.514 10 H 0.054 0.946 11 C 0.062 3.938 12 N -0.890 5.890 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.126 4.126 18 C 0.088 3.912 19 C -0.129 4.129 20 C -0.158 4.158 21 C 0.058 3.942 22 O -0.366 6.366 23 C 0.090 3.910 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.711 -17.005 2.938 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.119 4.119 3 C 0.312 3.688 4 O -0.417 6.417 5 N -0.332 5.332 6 C -0.011 4.011 7 C -0.161 4.161 8 C 0.031 3.969 9 C -0.552 4.552 10 H 0.072 0.928 11 C -0.139 4.139 12 N -0.529 5.529 13 Si 0.718 3.282 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.164 4.164 18 C -0.034 4.034 19 C -0.166 4.166 20 C -0.196 4.196 21 C -0.019 4.019 22 O -0.283 6.283 23 C 0.012 3.988 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.269 -16.507 3.561 17.039 hybrid contribution -0.930 0.704 -0.605 1.314 sum 1.338 -15.803 2.956 16.133 Atomic orbital electron populations 1.22090 0.92078 1.03265 1.03760 1.21504 0.97674 0.94300 0.98472 1.20093 0.79563 0.86635 0.82465 1.90663 1.42329 1.75015 1.33704 1.48126 1.50954 1.15938 1.18184 1.21758 0.97150 0.80973 1.01267 1.21926 0.95835 0.99775 0.98569 1.18619 0.94986 0.89671 0.93580 1.21182 0.93265 0.93180 1.47589 0.92757 1.24961 0.95298 0.98431 0.95231 1.69847 1.16280 1.17016 1.49733 0.86625 0.82110 0.81183 0.78255 1.20731 1.21252 1.19984 1.22046 0.96427 0.97432 1.00470 1.22378 0.93781 0.98536 0.88710 1.22166 0.95874 1.00817 0.97708 1.22204 0.96210 1.02594 0.98586 1.22572 0.99072 0.94157 0.86074 1.88058 1.19816 1.76002 1.44469 1.22401 0.81351 0.98188 0.96826 0.91696 0.90013 0.91458 0.90719 0.92597 0.87919 0.94448 0.95568 0.92948 0.92150 0.92867 0.92142 0.89222 0.88976 0.91000 0.90883 0.90697 0.93512 0.89160 0.92922 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.10 37.16 0.30 -1.44 16 2 C -0.12 -1.52 0.50 -155.45 -0.08 -1.60 16 3 C 0.53 9.29 5.20 -10.98 -0.06 9.23 16 4 O -0.54 -11.58 14.90 -8.14 -0.12 -11.70 16 5 N -0.60 -10.74 2.97 -173.04 -0.51 -11.26 16 6 C 0.11 2.25 6.41 -3.94 -0.03 2.22 16 7 C -0.12 -2.86 5.14 -26.83 -0.14 -2.99 16 8 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 9 C -0.51 -13.60 8.56 -34.44 -0.29 -13.90 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -24.80 11.30 55.43 0.63 -24.17 16 13 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 17 C -0.13 -2.37 5.12 -26.61 -0.14 -2.51 16 18 C 0.09 1.38 3.81 -3.72 -0.01 1.37 16 19 C -0.13 -1.41 4.40 -26.47 -0.12 -1.52 16 20 C -0.16 -1.79 5.87 -26.59 -0.16 -1.95 16 21 C 0.06 0.66 6.84 37.20 0.25 0.91 16 22 O -0.37 -5.43 9.99 -48.93 -0.49 -5.92 16 23 C 0.09 1.16 5.01 37.20 0.19 1.35 16 24 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 25 H 0.08 1.01 4.87 -51.93 -0.25 0.76 16 26 H 0.07 0.58 8.02 -51.93 -0.42 0.16 16 27 H 0.07 1.59 7.00 -51.93 -0.36 1.22 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 2.68 6.03 -51.93 -0.31 2.36 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.03 7.89 -51.93 -0.41 0.62 16 35 H 0.06 0.92 8.00 -51.92 -0.42 0.50 16 36 H 0.09 1.15 2.87 -51.93 -0.15 1.00 16 37 H 0.09 1.02 4.41 -51.93 -0.23 0.79 16 38 H 0.07 0.63 8.11 -51.93 -0.42 0.20 16 39 H 0.07 1.04 7.39 -51.93 -0.38 0.65 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 1.36 7.96 -51.93 -0.41 0.95 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.60 324.13 -8.30 -38.90 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.11 Total: 1.65 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -0.56 Total: -8.27 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.11 Total: -35.43 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.61 Total: -17.62 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.60 -8.30 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.121 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds