Wall clock time and date at job start Tue Mar 31 2020 07:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.52055 * 2 1 4 4 O 1.21278 * 120.00296 * 113.30671 * 3 2 1 5 5 N 1.34781 * 120.00213 * 293.31116 * 3 2 1 6 6 C 1.46916 * 120.63214 * 184.77590 * 5 3 2 7 7 C 1.52766 * 109.01068 * 233.58325 * 6 5 3 8 8 C 1.53040 * 109.38166 * 305.59059 * 7 6 5 9 9 C 1.50703 * 109.46016 * 181.26037 * 8 7 6 10 10 H 1.08001 * 119.99474 * 239.92802 * 9 8 7 11 11 C 1.37872 * 119.99931 * 59.93131 * 9 8 7 12 12 N 1.31516 * 120.00226 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99642 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47256 * 90.00017 * 13 11 9 15 15 H 1.48497 * 109.46761 * 209.99578 * 13 11 9 16 16 H 1.48497 * 109.47270 * 329.99554 * 13 11 9 17 17 C 1.53044 * 109.53820 * 61.23611 * 8 7 6 18 18 C 1.46923 * 120.62679 * 5.05841 * 5 3 2 19 19 C 1.53309 * 109.55782 * 239.87283 * 2 1 3 20 20 C 1.53190 * 108.96225 * 183.10818 * 19 2 1 21 21 C 1.53089 * 109.21173 * 56.95223 * 20 19 2 22 22 O 1.42903 * 109.41950 * 302.35850 * 21 20 19 23 23 C 1.42901 * 114.09306 * 61.15818 * 22 21 20 24 24 H 1.08997 * 109.47439 * 284.33395 * 1 2 3 25 25 H 1.09001 * 109.47049 * 44.33761 * 1 2 3 26 26 H 1.09002 * 109.46545 * 164.33293 * 1 2 3 27 27 H 1.09006 * 109.58692 * 353.41594 * 6 5 3 28 28 H 1.08996 * 109.58766 * 113.84124 * 6 5 3 29 29 H 1.09001 * 109.56651 * 185.54874 * 7 6 5 30 30 H 1.09005 * 109.35607 * 65.49931 * 7 6 5 31 31 H 1.08999 * 109.44871 * 301.22452 * 8 7 6 32 32 H 0.96999 * 119.99513 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.49598 * 178.68226 * 17 8 7 34 34 H 1.09001 * 109.52104 * 58.60502 * 17 8 7 35 35 H 1.09010 * 109.58266 * 246.15580 * 18 5 3 36 36 H 1.09001 * 109.58978 * 6.57896 * 18 5 3 37 37 H 1.08999 * 109.62606 * 63.23866 * 19 2 1 38 38 H 1.08994 * 109.53092 * 302.92190 * 19 2 1 39 39 H 1.09000 * 109.52147 * 297.01698 * 20 19 2 40 40 H 1.08999 * 109.51983 * 176.89187 * 20 19 2 41 41 H 1.09005 * 109.48038 * 62.34293 * 21 20 19 42 42 H 1.09004 * 109.47502 * 182.36077 * 21 20 19 43 43 H 1.08999 * 109.48447 * 58.83150 * 23 22 21 44 44 H 1.09001 * 109.47505 * 178.84659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0336 1.4204 0.0000 4 8 2.6279 1.8531 0.9646 5 7 1.8234 2.2099 -1.0719 6 6 2.3973 3.5611 -1.1304 7 6 1.2815 4.5636 -1.4198 8 6 0.5358 4.1415 -2.6878 9 6 -0.5456 5.1461 -2.9922 10 1 -1.5783 4.8326 -3.0310 11 6 -0.2163 6.4652 -3.2212 12 7 1.0413 6.8470 -3.1736 13 14 -1.5569 7.7105 -3.5979 14 1 -2.0449 8.3110 -2.3304 15 1 -1.0090 8.7781 -4.4726 16 1 -2.6822 7.0324 -4.2899 17 6 -0.0939 2.7628 -2.4763 18 6 1.0110 1.7379 -2.2014 19 6 2.0433 -0.7251 -1.2495 20 6 3.5731 -0.7854 -1.1969 21 6 4.0057 -1.4792 0.0974 22 8 3.4695 -0.7722 1.2175 23 6 2.0416 -0.7242 1.2480 24 1 -0.3634 0.2544 0.9956 25 1 -0.3633 0.7350 -0.7182 26 1 -0.3632 -0.9895 -0.2775 27 1 2.8640 3.8016 -0.1751 28 1 3.1418 3.6078 -1.9252 29 1 1.7100 5.5556 -1.5627 30 1 0.5875 4.5842 -0.5794 31 1 1.2354 4.0970 -3.5224 32 1 1.2727 7.7751 -3.3344 33 1 -0.6444 2.4731 -3.3715 34 1 -0.7753 2.8000 -1.6263 35 1 1.6401 1.6329 -3.0854 36 1 0.5632 0.7758 -1.9527 37 1 1.7302 -0.1831 -2.1418 38 1 1.6392 -1.7370 -1.2753 39 1 3.9785 0.2261 -1.2211 40 1 3.9450 -1.3475 -2.0535 41 1 3.6338 -2.5038 0.1024 42 1 5.0939 -1.4871 0.1592 43 1 1.6441 -1.7389 1.2681 44 1 1.7150 -0.1881 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335978310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:25 Heat of formation + Delta-G solvation = -99.615921 kcal Electronic energy + Delta-G solvation = -24101.331739 eV Core-core repulsion = 20824.770770 eV Total energy + Delta-G solvation = -3276.560969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.11896 -39.60825 -38.21139 -36.15529 -35.00796 -33.07351 -32.78734 -31.72038 -28.17239 -27.86678 -26.18770 -25.36548 -24.01703 -23.29699 -22.45140 -20.96453 -19.63598 -18.44207 -17.56247 -17.30155 -17.08099 -16.54904 -16.24385 -16.15579 -15.55346 -15.44998 -15.10072 -14.82783 -14.54165 -14.25995 -14.05649 -13.71971 -13.56657 -13.17920 -13.09160 -13.02928 -12.87280 -12.82651 -12.58819 -12.43590 -12.15088 -11.99991 -11.94084 -11.54793 -11.43318 -11.31756 -10.94802 -10.84567 -10.57624 -10.43184 -10.19916 -9.50335 -8.08256 -6.22661 1.40672 1.42396 1.51413 1.72855 2.10477 2.43162 3.03336 3.18487 3.41048 3.62898 3.80905 3.92063 4.02400 4.09719 4.26988 4.29497 4.31629 4.44896 4.49955 4.57074 4.57691 4.68163 4.71517 4.73414 4.76944 4.87274 4.88841 4.92139 4.96184 5.02332 5.16521 5.19436 5.21759 5.27060 5.35308 5.45543 5.53815 5.67701 5.96426 6.10137 6.36471 6.36959 6.59637 6.89455 7.28066 7.45957 8.95145 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.004439 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.198583 B = 6306.662577 C = 6463.124540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C 0.519 3.481 4 O -0.587 6.587 5 N -0.602 5.602 6 C 0.121 3.879 7 C -0.110 4.110 8 C 0.046 3.954 9 C -0.531 4.531 10 H 0.055 0.945 11 C 0.012 3.988 12 N -0.918 5.918 13 Si 0.951 3.049 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.265 1.265 17 C -0.118 4.118 18 C 0.094 3.906 19 C -0.126 4.126 20 C -0.158 4.158 21 C 0.052 3.948 22 O -0.402 6.402 23 C 0.087 3.913 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.002 0.998 32 H 0.260 0.740 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.033 0.967 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 -20.198 2.046 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C 0.309 3.691 4 O -0.467 6.467 5 N -0.334 5.334 6 C -0.002 4.002 7 C -0.149 4.149 8 C 0.028 3.972 9 C -0.569 4.569 10 H 0.073 0.927 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.777 3.223 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.189 1.189 17 C -0.156 4.156 18 C -0.027 4.027 19 C -0.163 4.163 20 C -0.196 4.196 21 C -0.024 4.024 22 O -0.321 6.321 23 C 0.010 3.990 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.127 0.873 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.038 0.962 31 H 0.020 0.980 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.131 0.869 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.754 -19.725 2.650 19.916 hybrid contribution -0.416 1.717 -0.298 1.792 sum 0.338 -18.008 2.352 18.164 Atomic orbital electron populations 1.22125 0.90221 1.05297 1.03408 1.21580 0.98951 0.90666 1.00168 1.21111 0.78418 0.88463 0.81156 1.90636 1.44354 1.76343 1.35352 1.48176 1.51150 1.14778 1.19283 1.21380 0.96103 0.82368 1.00355 1.21680 0.96095 0.99121 0.97974 1.18596 0.94088 0.92194 0.92347 1.21601 0.93982 0.94118 1.47238 0.92671 1.25728 0.97213 1.00377 0.95309 1.69992 1.17976 1.17204 1.50556 0.85666 0.79806 0.78894 0.77946 1.20723 1.21102 1.18902 1.21917 0.97229 0.95424 1.01049 1.22547 0.92712 0.99078 0.88363 1.22237 0.95423 1.02630 0.96029 1.22208 0.96729 1.00798 0.99823 1.22784 0.99380 0.95304 0.84914 1.88013 1.20949 1.77001 1.46123 1.22500 0.80814 0.99927 0.95805 0.92134 0.91169 0.87350 0.92236 0.92514 0.91187 0.96242 0.98006 0.93133 0.90535 0.93305 0.91066 0.85149 0.88915 0.86943 0.94797 0.87948 0.90321 0.89016 0.88951 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.10 71.98 0.58 -2.28 16 2 C -0.11 -2.59 0.50 -52.79 -0.03 -2.62 16 3 C 0.52 18.22 5.20 87.66 0.46 18.68 16 4 O -0.59 -26.03 14.90 10.07 0.15 -25.88 16 5 N -0.60 -21.53 2.97 -819.75 -2.43 -23.96 16 6 C 0.12 5.16 6.41 86.22 0.55 5.72 16 7 C -0.11 -5.37 5.14 30.53 0.16 -5.21 16 8 C 0.05 2.22 2.07 -11.51 -0.02 2.20 16 9 C -0.53 -28.47 8.56 25.60 0.22 -28.25 16 10 H 0.06 2.88 7.74 -2.91 -0.02 2.85 16 11 C 0.01 0.67 5.30 84.65 0.45 1.12 16 12 N -0.92 -52.75 11.30 21.45 0.24 -52.51 16 13 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 C -0.12 -4.32 5.12 30.67 0.16 -4.17 16 18 C 0.09 2.76 3.81 86.36 0.33 3.09 16 19 C -0.13 -2.20 4.40 30.76 0.14 -2.07 16 20 C -0.16 -3.13 5.87 30.69 0.18 -2.95 16 21 C 0.05 1.04 6.84 72.01 0.49 1.53 16 22 O -0.40 -11.41 9.99 -135.89 -1.36 -12.77 16 23 C 0.09 2.04 5.01 72.01 0.36 2.40 16 24 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 25 H 0.07 1.49 4.87 -2.39 -0.01 1.48 16 26 H 0.11 1.18 8.02 -2.39 -0.02 1.16 16 27 H 0.06 2.70 7.00 -2.38 -0.02 2.68 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 3.88 6.03 -2.39 -0.01 3.86 16 30 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 34 H 0.05 1.82 7.89 -2.39 -0.02 1.81 16 35 H 0.07 1.99 8.00 -2.38 -0.02 1.97 16 36 H 0.13 2.83 2.87 -2.39 -0.01 2.82 16 37 H 0.09 1.61 4.41 -2.39 -0.01 1.60 16 38 H 0.11 1.16 8.11 -2.39 -0.02 1.14 16 39 H 0.03 0.93 7.39 -2.39 -0.02 0.91 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 2.10 7.96 -2.39 -0.02 2.08 16 Total: -1.00 -70.60 324.13 3.63 -66.97 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.98 Total: 15.69 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.02 Total: -12.82 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -2.19 Total: -76.47 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.21 Total: -38.65 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.60 3.63 -66.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335978310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.644 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds