Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 119.99731 * 2 1 4 4 H 1.48505 * 109.46857 * 274.99888 * 3 2 1 5 5 H 1.48494 * 109.47311 * 34.99929 * 3 2 1 6 6 H 1.48497 * 109.46965 * 155.00153 * 3 2 1 7 7 C 1.37875 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00163 * 175.15111 * 7 2 1 9 9 C 1.50699 * 119.99813 * 355.15752 * 7 2 1 10 10 C 1.53071 * 109.45529 * 65.25715 * 9 7 2 11 11 C 1.53197 * 109.29251 * 181.24503 * 10 9 7 12 12 N 1.46928 * 108.89143 * 305.57434 * 11 10 9 13 13 C 1.34776 * 120.63155 * 233.56119 * 12 11 10 14 14 O 1.21285 * 120.00074 * 355.19720 * 13 12 11 15 15 C 1.50699 * 120.00137 * 175.19656 * 13 12 11 16 16 H 1.09005 * 109.46832 * 35.21453 * 15 13 12 17 17 C 1.52997 * 109.47309 * 275.21633 * 15 13 12 18 18 C 1.52997 * 109.47306 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47294 * 59.99601 * 18 17 15 20 20 C 1.53009 * 109.47191 * 299.99954 * 19 18 17 21 21 H 1.09000 * 109.47151 * 179.97438 * 20 19 18 22 22 O 1.42892 * 109.47066 * 300.00053 * 20 19 18 23 23 C 1.52996 * 109.47002 * 155.20961 * 15 13 12 24 24 C 1.46927 * 118.73817 * 53.54267 * 12 11 10 25 25 C 1.53039 * 109.45936 * 185.47347 * 9 7 2 26 26 H 0.97006 * 119.99863 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.45917 * 305.43858 * 9 7 2 28 28 H 1.08995 * 109.38846 * 61.36804 * 10 9 7 29 29 H 1.08996 * 109.62391 * 301.25870 * 10 9 7 30 30 H 1.08999 * 109.58389 * 185.72398 * 11 10 9 31 31 H 1.08996 * 109.58759 * 65.43996 * 11 10 9 32 32 H 1.09002 * 109.46564 * 299.99908 * 17 15 13 33 33 H 1.08994 * 109.47316 * 59.99593 * 17 15 13 34 34 H 1.09005 * 109.46791 * 299.99792 * 18 17 15 35 35 H 1.08997 * 109.47323 * 179.97438 * 18 17 15 36 36 H 1.08996 * 109.47260 * 180.02562 * 19 18 17 37 37 H 1.08999 * 109.47604 * 59.99931 * 19 18 17 38 38 H 0.96696 * 114.00724 * 299.99952 * 22 20 19 39 39 H 1.09000 * 109.47847 * 300.00062 * 23 15 13 40 40 H 1.09002 * 109.47421 * 60.00661 * 23 15 13 41 41 H 1.09003 * 109.58715 * 66.17560 * 24 12 11 42 42 H 1.08991 * 109.58642 * 186.45845 * 24 12 11 43 43 H 1.08999 * 109.49880 * 58.65605 * 25 9 7 44 44 H 1.09003 * 109.51680 * 298.57584 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1075 -1.3948 5 1 1.5034 2.6199 0.8030 6 1 3.5955 1.4121 0.5917 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0785 9 6 1.2551 -2.4967 0.1113 10 6 0.3835 -2.6908 -1.1320 11 6 -0.4002 -4.0006 -1.0014 12 7 0.5445 -5.0967 -0.7463 13 6 0.5457 -6.1972 -1.5243 14 8 -0.2938 -6.3291 -2.3897 15 6 1.5901 -7.2641 -1.3189 16 1 1.8212 -7.3466 -0.2569 17 6 2.8583 -6.8913 -2.0893 18 6 3.9184 -7.9747 -1.8814 19 6 3.3857 -9.3144 -2.3935 20 6 2.1175 -9.6872 -1.6229 21 1 1.7378 -10.6415 -1.9881 22 8 2.4207 -9.7960 -0.2308 23 6 1.0577 -8.6041 -1.8305 24 6 1.4881 -4.9700 0.3728 25 6 2.2533 -3.6511 0.2256 26 1 -0.4850 0.8401 0.0004 27 1 0.6205 -2.4764 0.9973 28 1 1.0191 -2.7337 -2.0164 29 1 -0.3133 -1.8577 -1.2242 30 1 -0.9440 -4.1948 -1.9258 31 1 -1.1039 -3.9243 -0.1725 32 1 2.6270 -6.8088 -3.1514 33 1 3.2374 -5.9367 -1.7248 34 1 4.1496 -8.0576 -0.8194 35 1 4.8217 -7.7093 -2.4306 36 1 4.1408 -10.0863 -2.2449 37 1 3.1544 -9.2316 -3.4554 38 1 3.0871 -10.4655 -0.0244 39 1 0.1543 -8.8697 -1.2816 40 1 0.8266 -8.5217 -2.8926 41 1 0.9399 -4.9712 1.3149 42 1 2.1884 -5.8050 0.3565 43 1 2.8872 -3.4988 1.0991 44 1 2.8720 -3.6876 -0.6711 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336158838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = -114.581560 kcal Electronic energy + Delta-G solvation = -23402.902194 eV Core-core repulsion = 20125.692267 eV Total energy + Delta-G solvation = -3277.209928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.27794 -38.55247 -36.73362 -35.07913 -33.47673 -31.41916 -30.93176 -30.24635 -29.55559 -26.23350 -23.98403 -22.78775 -22.58574 -21.96287 -20.22997 -19.50268 -18.17364 -16.99799 -16.94192 -16.28923 -15.87124 -14.87656 -14.77710 -14.62777 -14.52449 -14.17679 -13.45505 -13.13539 -13.05515 -12.73392 -12.58288 -12.51946 -12.44481 -12.12122 -11.80632 -11.66960 -11.24243 -11.09965 -10.98119 -10.93735 -10.75914 -10.64443 -10.45764 -10.34060 -10.07962 -9.82556 -9.54276 -9.35843 -9.01697 -8.89565 -8.37271 -7.93363 -6.01813 -4.07584 3.04311 3.28826 3.36471 3.39374 3.54090 4.09476 4.41994 4.55148 4.58458 4.73419 5.02906 5.06226 5.13795 5.28537 5.29031 5.33331 5.43850 5.49043 5.65847 5.77062 5.82532 5.87560 5.89624 6.00903 6.06422 6.07745 6.14017 6.20806 6.30653 6.36179 6.45722 6.49335 6.64468 6.88813 6.99173 7.21301 7.36312 7.48583 7.69928 7.92264 7.99303 8.06065 8.41051 8.64879 8.96373 9.57425 11.04458 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.004080 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.719695 B = 6860.718483 C = 7270.117720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.119 4.119 11 C 0.108 3.892 12 N -0.599 5.599 13 C 0.513 3.487 14 O -0.560 6.560 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.153 4.153 20 C 0.106 3.894 21 H 0.055 0.945 22 O -0.563 6.563 23 C -0.093 4.093 24 C 0.103 3.897 25 C -0.123 4.123 26 H 0.260 0.740 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.373 0.627 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -18.196 -1.686 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.157 4.157 11 C -0.014 4.014 12 N -0.330 5.330 13 C 0.301 3.699 14 O -0.439 6.439 15 C -0.122 4.122 16 H 0.118 0.882 17 C -0.147 4.147 18 C -0.149 4.149 19 C -0.191 4.191 20 C 0.047 3.953 21 H 0.073 0.927 22 O -0.368 6.368 23 C -0.131 4.131 24 C -0.020 4.020 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.220 0.780 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.187 -17.632 -2.089 18.498 hybrid contribution 0.897 0.611 -0.026 1.086 sum 6.085 -17.021 -2.115 18.199 Atomic orbital electron populations 1.69884 1.05890 1.26479 1.50562 1.24969 0.94827 0.99061 0.95070 0.86624 0.79984 0.83720 0.77931 1.20847 1.21205 1.19913 1.21175 0.93129 0.90631 1.50280 0.92737 1.18650 0.92606 0.91551 0.94218 1.21996 0.99821 0.94394 0.99529 1.21866 0.91534 0.87114 1.00864 1.48231 1.36258 1.17909 1.30629 1.20594 0.85378 0.82716 0.81165 1.90621 1.39913 1.78692 1.34691 1.21230 0.94722 0.93571 1.02704 0.88219 1.21474 0.93597 0.99119 1.00478 1.21420 0.97690 0.93868 1.01927 1.22271 0.97752 0.98198 1.00850 1.21808 0.94448 0.97670 0.81398 0.92704 1.86556 1.63448 1.62504 1.24267 1.21377 0.97094 0.92063 1.02541 1.21931 0.91824 0.99520 0.88688 1.22008 0.98946 0.94277 1.00875 0.92986 0.95294 0.94412 0.88399 0.90790 0.92448 0.91548 0.90891 0.91122 0.91807 0.91860 0.90949 0.78024 0.91175 0.89626 0.91967 0.90775 0.92066 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.53 55.43 0.64 -24.31 16 2 C 0.06 1.69 5.36 -17.82 -0.10 1.59 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.71 8.49 -34.44 -0.29 -14.00 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.00 -91.71 -0.18 0.97 16 10 C -0.12 -2.77 5.21 -26.59 -0.14 -2.91 16 11 C 0.11 2.22 6.41 -3.71 -0.02 2.20 16 12 N -0.60 -11.10 2.97 -172.77 -0.51 -11.62 16 13 C 0.51 9.23 6.80 -10.99 -0.07 9.16 16 14 O -0.56 -11.73 15.53 5.55 0.09 -11.64 16 15 C -0.10 -1.40 1.55 -91.78 -0.14 -1.54 16 16 H 0.10 1.36 5.82 -51.93 -0.30 1.06 16 17 C -0.11 -1.35 5.08 -26.73 -0.14 -1.49 16 18 C -0.11 -1.07 5.78 -26.73 -0.15 -1.23 16 19 C -0.15 -1.27 5.64 -26.73 -0.15 -1.42 16 20 C 0.11 0.99 3.77 -26.75 -0.10 0.89 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 O -0.56 -5.35 11.97 -35.23 -0.42 -5.77 16 23 C -0.09 -1.16 4.47 -26.76 -0.12 -1.28 16 24 C 0.10 1.72 6.26 -3.71 -0.02 1.70 16 25 C -0.12 -2.39 5.31 -26.61 -0.14 -2.53 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 2.55 6.30 -51.93 -0.33 2.22 16 30 H 0.07 1.56 7.03 -51.93 -0.37 1.19 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.98 7.95 -51.93 -0.41 0.56 16 34 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.37 1.96 9.08 45.56 0.41 2.37 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.11 7.87 -51.93 -0.41 0.70 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.04 5.22 -51.93 -0.27 0.77 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -30.55 335.69 -8.64 -39.19 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.69 Total: 3.04 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -1.78 Total: -9.90 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.12 Total: -35.92 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.34 Total: -17.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.55 -8.64 -39.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336158838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.391 kcal (2) G-P(sol) polarization free energy of solvation -30.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds