Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00227 * 2 1 4 4 H 1.48497 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46858 * 300.00093 * 3 2 1 6 6 H 1.48493 * 109.47300 * 59.99745 * 3 2 1 7 7 C 1.37881 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99901 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.53034 * 109.45614 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31406 * 178.61380 * 10 9 7 12 12 N 1.46928 * 108.77156 * 54.63569 * 11 10 9 13 13 C 1.34774 * 120.63015 * 126.37393 * 12 11 10 14 14 O 1.21276 * 120.00489 * 4.69976 * 13 12 11 15 15 C 1.50703 * 119.99957 * 184.70835 * 13 12 11 16 16 H 1.09005 * 109.47148 * 324.69101 * 15 13 12 17 17 C 1.52996 * 109.46949 * 204.69251 * 15 13 12 18 18 C 1.53002 * 109.47011 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.47258 * 59.99814 * 18 17 15 20 20 C 1.52996 * 109.47261 * 300.00033 * 19 18 17 21 21 H 1.08997 * 109.47009 * 300.00344 * 20 19 18 22 22 O 1.42898 * 109.47384 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47456 * 84.68983 * 15 13 12 24 24 C 1.46928 * 118.73964 * 306.64506 * 12 11 10 25 25 C 1.52765 * 109.01045 * 53.30840 * 24 12 11 26 26 H 0.97008 * 120.00029 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46091 * 299.97325 * 9 7 2 28 28 H 1.09005 * 109.50269 * 58.66417 * 10 9 7 29 29 H 1.08995 * 109.50100 * 298.56585 * 10 9 7 30 30 H 1.08998 * 109.58498 * 294.85430 * 11 10 9 31 31 H 1.09000 * 109.58859 * 174.42194 * 11 10 9 32 32 H 1.08998 * 109.47361 * 299.99677 * 17 15 13 33 33 H 1.09001 * 109.47576 * 59.99849 * 17 15 13 34 34 H 1.09003 * 109.46950 * 180.02562 * 18 17 15 35 35 H 1.09005 * 109.47283 * 299.99971 * 18 17 15 36 36 H 1.09000 * 109.46808 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.46845 * 59.99888 * 19 18 17 38 38 H 0.96696 * 113.99754 * 60.00006 * 22 20 19 39 39 H 1.08996 * 109.46999 * 300.00213 * 23 15 13 40 40 H 1.09005 * 109.46845 * 59.99934 * 23 15 13 41 41 H 1.09000 * 109.58930 * 173.14426 * 24 12 11 42 42 H 1.09006 * 109.58452 * 293.57132 * 24 12 11 43 43 H 1.08994 * 109.56662 * 185.55131 * 25 24 12 44 44 H 1.09005 * 109.38355 * 65.51197 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2456 -3.6622 -0.0005 11 6 1.4766 -4.9867 0.0344 12 7 0.5222 -5.0089 -1.0824 13 6 0.5118 -6.0347 -1.9565 14 8 1.2357 -6.9912 -1.7777 15 6 -0.3991 -5.9932 -3.1563 16 1 -1.3319 -5.4974 -2.8873 17 6 -0.6957 -7.4203 -3.6211 18 6 -1.6211 -7.3782 -4.8388 19 6 -0.9407 -6.6045 -5.9699 20 6 -0.6441 -5.1773 -5.5051 21 1 -1.5768 -4.6818 -5.2357 22 8 -0.0081 -4.4548 -6.5613 23 6 0.2818 -5.2196 -4.2872 24 6 -0.4167 -3.8886 -1.2318 25 6 0.3699 -2.5791 -1.2493 26 1 -0.4850 0.8401 0.0004 27 1 0.6250 -2.5571 0.8900 28 1 2.8882 -3.5914 0.8771 29 1 2.8554 -3.6193 -0.9029 30 1 0.9371 -5.0711 0.9778 31 1 2.1751 -5.8175 -0.0652 32 1 0.2370 -7.9161 -3.8901 33 1 -1.1808 -7.9715 -2.8154 34 1 -1.8327 -8.3950 -5.1696 35 1 -2.5538 -6.8826 -4.5694 36 1 -1.5998 -6.5749 -6.8375 37 1 -0.0080 -7.1001 -6.2393 38 1 -0.5385 -4.3881 -7.3671 39 1 0.4931 -4.2029 -3.9561 40 1 1.2146 -5.7154 -4.5562 41 1 -0.9670 -3.9952 -2.1667 42 1 -1.1137 -3.8818 -0.3938 43 1 -0.3226 -1.7375 -1.2606 44 1 0.9974 -2.5459 -2.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336158839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -115.643694 kcal Electronic energy + Delta-G solvation = -23411.112260 eV Core-core repulsion = 20133.856275 eV Total energy + Delta-G solvation = -3277.255986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.28925 -38.44310 -36.83554 -35.43094 -33.52687 -31.81802 -30.68553 -29.95766 -29.52004 -26.29651 -24.05304 -22.70642 -22.46562 -22.06744 -20.33130 -19.57035 -18.30292 -17.27542 -16.82167 -16.16100 -15.80273 -14.99703 -14.78554 -14.59922 -14.54111 -13.89685 -13.85566 -13.27801 -13.09893 -12.76596 -12.68167 -12.52491 -12.45242 -12.17669 -11.64140 -11.51395 -11.32003 -11.25598 -10.96575 -10.90110 -10.67395 -10.61013 -10.55756 -10.37623 -10.09661 -9.88012 -9.64459 -9.29164 -9.17833 -8.89541 -8.38880 -7.99907 -6.04210 -4.09994 2.92381 3.27090 3.35674 3.39928 3.46237 4.11618 4.40689 4.52464 4.56413 4.83999 4.98901 5.02548 5.19326 5.23504 5.25311 5.29812 5.38740 5.45849 5.64777 5.78312 5.79311 5.90259 5.91996 5.96962 6.03531 6.07313 6.08293 6.15369 6.22261 6.31027 6.34187 6.45708 6.66051 6.89401 7.03770 7.14582 7.26927 7.56058 7.65806 7.90983 7.93787 8.03152 8.39452 8.56959 8.93607 9.55343 11.01413 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.004774 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.540274 B = 5864.196196 C = 6731.799579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.598 5.598 13 C 0.517 3.483 14 O -0.558 6.558 15 C -0.103 4.103 16 H 0.094 0.906 17 C -0.103 4.103 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.108 3.892 21 H 0.057 0.943 22 O -0.565 6.565 23 C -0.102 4.102 24 C 0.101 3.899 25 C -0.124 4.124 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.375 0.625 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.068 -11.215 -9.650 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.011 4.011 12 N -0.330 5.330 13 C 0.305 3.695 14 O -0.438 6.438 15 C -0.124 4.124 16 H 0.112 0.888 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.190 4.190 20 C 0.050 3.950 21 H 0.075 0.925 22 O -0.370 6.370 23 C -0.140 4.140 24 C -0.021 4.021 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.222 0.778 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.356 -11.527 -9.077 15.619 hybrid contribution -0.097 1.053 -0.377 1.123 sum -5.453 -10.474 -9.455 15.127 Atomic orbital electron populations 1.69843 1.05853 1.26341 1.51105 1.24951 0.94862 0.99050 0.95059 0.86566 0.80226 0.83853 0.77555 1.19827 1.21041 1.21058 1.21248 0.93000 0.90556 1.50083 0.92651 1.18637 0.92650 0.91758 0.93969 1.22011 0.98921 0.94245 1.00985 1.21698 0.91743 0.99638 0.88006 1.48259 1.35979 1.20990 1.27784 1.20405 0.83390 0.82147 0.83558 1.90623 1.43497 1.33579 1.76055 1.21262 0.99262 0.98286 0.93636 0.88811 1.21413 1.00537 0.94774 0.97366 1.21491 0.98544 1.00329 0.94981 1.22299 1.01479 0.96803 0.98432 1.21765 0.95154 0.90510 0.87613 0.92469 1.86558 1.47812 1.76975 1.25661 1.21374 0.98786 1.01612 0.92225 1.22023 0.91785 0.87610 1.00714 1.21948 1.00112 0.94592 0.99621 0.93050 0.95478 0.92148 0.92970 0.92254 0.90441 0.90631 0.91489 0.91415 0.91754 0.91831 0.91012 0.77791 0.90022 0.90664 0.91295 0.91965 0.87728 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 11.31 55.43 0.63 -23.70 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.60 8.56 -34.44 -0.29 -13.90 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.15 2.07 -91.73 -0.19 0.96 16 10 C -0.12 -2.55 5.30 -26.61 -0.14 -2.69 16 11 C 0.11 2.06 6.42 -3.71 -0.02 2.04 16 12 N -0.60 -10.77 2.98 -173.02 -0.52 -11.29 16 13 C 0.52 9.00 6.80 -10.99 -0.07 8.93 16 14 O -0.56 -11.23 15.52 5.56 0.09 -11.14 16 15 C -0.10 -1.40 1.69 -91.77 -0.15 -1.55 16 16 H 0.09 1.15 6.30 -51.93 -0.33 0.82 16 17 C -0.10 -1.22 4.73 -26.73 -0.13 -1.35 16 18 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 19 C -0.15 -1.40 5.54 -26.73 -0.15 -1.55 16 20 C 0.11 1.20 3.47 -26.71 -0.09 1.11 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 O -0.56 -6.65 13.32 -35.23 -0.47 -7.12 16 23 C -0.10 -1.41 4.72 -26.70 -0.13 -1.53 16 24 C 0.10 1.78 6.19 -3.93 -0.02 1.75 16 25 C -0.12 -2.71 5.14 -26.83 -0.14 -2.85 16 26 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.44 7.03 -51.93 -0.37 1.07 16 32 H 0.07 1.00 7.87 -51.93 -0.41 0.59 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.38 2.62 9.08 45.56 0.41 3.04 16 39 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 1.04 5.18 -51.93 -0.27 0.77 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 44 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 337.12 15.07 5.08 5.08 Total: -1.00 -30.15 337.12 -8.72 -38.87 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.72 Total: 3.72 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.79 Total: -10.27 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.11 Total: -34.99 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.38 Total: -18.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.15 -8.72 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336158839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.774 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds