Wall clock time and date at job start Tue Mar 31 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48499 * 109.47009 * 264.99262 * 3 2 1 5 5 H 1.48500 * 109.47356 * 24.99882 * 3 2 1 6 6 H 1.48506 * 109.46929 * 144.99732 * 3 2 1 7 7 C 1.37878 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00228 * 185.50608 * 7 2 1 9 9 C 1.50704 * 120.00225 * 5.49810 * 7 2 1 10 10 C 1.53039 * 109.46272 * 185.31104 * 9 7 2 11 11 C 1.53191 * 109.31201 * 178.61618 * 10 9 7 12 12 N 1.46928 * 108.77338 * 54.63461 * 11 10 9 13 13 C 1.34778 * 120.62852 * 126.11594 * 12 11 10 14 14 O 1.21276 * 120.00280 * 174.27836 * 13 12 11 15 15 C 1.50702 * 119.99941 * 354.28360 * 13 12 11 16 16 H 1.09004 * 109.46971 * 314.23614 * 15 13 12 17 17 C 1.53003 * 109.47642 * 74.23531 * 15 13 12 18 18 C 1.52998 * 109.47157 * 180.02562 * 17 15 13 19 19 C 1.52998 * 109.46856 * 299.99872 * 18 17 15 20 20 C 1.52995 * 109.47287 * 60.00561 * 19 18 17 21 21 H 1.08998 * 109.47590 * 59.99737 * 20 19 18 22 22 O 1.42903 * 109.47196 * 179.97438 * 20 19 18 23 23 C 1.52998 * 109.46714 * 299.99526 * 20 19 18 24 24 C 1.46928 * 118.74234 * 306.39035 * 12 11 10 25 25 C 1.53038 * 109.45556 * 65.24202 * 9 7 2 26 26 H 0.97000 * 119.99809 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.45996 * 305.29104 * 9 7 2 28 28 H 1.08995 * 109.49546 * 58.66567 * 10 9 7 29 29 H 1.08997 * 109.52432 * 298.58211 * 10 9 7 30 30 H 1.09001 * 109.58785 * 294.84864 * 11 10 9 31 31 H 1.08997 * 109.70537 * 174.49235 * 11 10 9 32 32 H 1.09002 * 109.46863 * 300.00245 * 17 15 13 33 33 H 1.08996 * 109.46580 * 60.00106 * 17 15 13 34 34 H 1.08996 * 109.46537 * 180.02562 * 18 17 15 35 35 H 1.08990 * 109.47340 * 59.99980 * 18 17 15 36 36 H 1.08998 * 109.47020 * 299.99949 * 19 18 17 37 37 H 1.09006 * 109.47215 * 180.02562 * 19 18 17 38 38 H 0.96691 * 114.00209 * 300.00318 * 22 20 19 39 39 H 1.08996 * 109.47527 * 299.99687 * 23 20 19 40 40 H 1.09003 * 109.47159 * 180.02562 * 23 20 19 41 41 H 1.08991 * 109.58608 * 173.39500 * 24 12 11 42 42 H 1.08999 * 109.58424 * 293.82338 * 24 12 11 43 43 H 1.08996 * 109.50116 * 301.33890 * 25 9 7 44 44 H 1.09000 * 109.49580 * 61.43506 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9852 -1.3947 5 1 1.3978 2.6809 0.5917 6 1 3.4899 1.4729 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0808 -1.1963 0.0903 9 6 1.2562 -2.4963 -0.1239 10 6 2.2333 -3.6632 0.0361 11 6 1.4638 -4.9846 -0.0565 12 7 0.7037 -5.0021 -1.3137 13 6 0.8356 -6.0246 -2.1818 14 8 0.1280 -6.0804 -3.1652 15 6 1.8624 -7.0987 -1.9304 16 1 2.8088 -6.6375 -1.6477 17 6 1.3811 -8.0098 -0.7994 18 6 2.4239 -9.0998 -0.5438 19 6 2.6199 -9.9264 -1.8163 20 6 3.1012 -9.0154 -2.9473 21 1 4.0473 -8.5540 -2.6645 22 8 3.2848 -9.7876 -4.1356 23 6 2.0584 -7.9254 -3.2028 24 6 -0.1985 -3.8807 -1.6095 25 6 0.5897 -2.5717 -1.4995 26 1 -0.4850 0.8401 -0.0004 27 1 0.4932 -2.5523 0.6525 28 1 2.7248 -3.5956 1.0066 29 1 2.9823 -3.6222 -0.7547 30 1 0.7778 -5.0678 0.7864 31 1 2.1642 -5.8196 -0.0414 32 1 1.2419 -7.4209 0.1072 33 1 0.4348 -8.4708 -1.0821 34 1 2.0808 -9.7491 0.2616 35 1 3.3700 -8.6384 -0.2610 36 1 1.6737 -10.3879 -2.0990 37 1 3.3625 -10.7033 -1.6341 38 1 3.9338 -10.4987 -4.0462 39 1 1.1123 -8.3868 -3.4857 40 1 2.4011 -7.2765 -4.0089 41 1 -0.5929 -3.9859 -2.6201 42 1 -1.0200 -3.8739 -0.8932 43 1 -0.0886 -1.7273 -1.6219 44 1 1.3538 -2.5407 -2.2762 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336158840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:19 Heat of formation + Delta-G solvation = -116.266763 kcal Electronic energy + Delta-G solvation = -23169.018998 eV Core-core repulsion = 19891.735995 eV Total energy + Delta-G solvation = -3277.283004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35408 -38.49771 -36.81108 -35.62625 -33.52079 -31.49698 -30.99556 -30.28937 -29.35343 -26.29145 -24.07550 -22.88304 -22.45944 -22.03694 -20.43069 -19.54812 -18.44638 -17.34816 -16.88583 -16.23772 -15.69562 -15.22128 -14.72031 -14.71015 -14.56168 -14.00975 -13.71214 -13.26483 -13.16431 -12.90923 -12.73528 -12.66538 -12.40528 -12.07447 -11.76927 -11.73072 -11.25976 -11.22445 -10.99288 -10.92117 -10.84527 -10.66171 -10.57529 -10.44022 -10.16245 -9.98197 -9.61839 -9.41047 -9.04761 -8.98369 -8.38198 -8.01292 -6.05489 -4.09411 2.95372 3.28441 3.35336 3.37068 3.38882 4.02506 4.40358 4.44757 4.50494 4.74586 4.93624 4.95361 5.09382 5.13957 5.24371 5.26576 5.30513 5.37976 5.47598 5.71711 5.74096 5.79952 5.83233 5.85460 5.95312 5.99230 6.06156 6.18807 6.22211 6.29176 6.37752 6.42598 6.58065 6.80759 6.93459 7.14427 7.27636 7.46276 7.66430 7.85943 7.92033 7.97473 8.37397 8.56270 8.94407 9.55253 11.02672 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031667 B = 0.003759 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.985246 B = 7447.043890 C = 7562.091389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.125 4.125 11 C 0.102 3.898 12 N -0.599 5.599 13 C 0.516 3.484 14 O -0.553 6.553 15 C -0.103 4.103 16 H 0.095 0.905 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.105 3.895 21 H 0.055 0.945 22 O -0.567 6.567 23 C -0.092 4.092 24 C 0.109 3.891 25 C -0.117 4.117 26 H 0.261 0.739 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.375 0.625 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -18.171 -0.130 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.163 4.163 11 C -0.020 4.020 12 N -0.331 5.331 13 C 0.303 3.697 14 O -0.432 6.432 15 C -0.124 4.124 16 H 0.113 0.887 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.190 4.190 20 C 0.046 3.954 21 H 0.073 0.927 22 O -0.372 6.372 23 C -0.130 4.130 24 C -0.012 4.012 25 C -0.156 4.156 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.222 0.778 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.578 -17.632 -0.857 18.237 hybrid contribution 0.933 0.705 0.332 1.216 sum 5.511 -16.927 -0.525 17.810 Atomic orbital electron populations 1.69920 1.05882 1.26627 1.50324 1.24963 0.94818 0.99056 0.95003 0.86668 0.79843 0.83575 0.78261 1.20626 1.21308 1.20015 1.21148 0.93250 0.90705 1.50312 0.92757 1.18639 0.93616 0.91635 0.93171 1.22026 0.99026 0.94352 1.00915 1.21984 0.94974 0.99635 0.85433 1.48204 1.43759 1.21089 1.20058 1.20387 0.84149 0.82457 0.82675 1.90650 1.46196 1.77039 1.29291 1.21224 0.99080 0.95119 0.96977 0.88673 1.21661 0.99343 0.96720 0.97709 1.21466 0.99443 0.97193 0.97101 1.22292 1.02395 0.98500 0.95807 1.21817 0.97878 0.91471 0.84192 0.92677 1.86544 1.65358 1.49102 1.36171 1.21221 0.99484 0.95785 0.96486 1.21855 0.92138 0.86341 1.00913 1.21946 0.99318 0.94448 0.99888 0.92937 0.94879 0.91984 0.92946 0.91767 0.90791 0.90509 0.91162 0.91229 0.91472 0.91013 0.91805 0.77836 0.90244 0.90817 0.90676 0.92244 0.89341 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.95 55.43 0.66 -24.15 16 2 C 0.06 1.70 5.25 -17.82 -0.09 1.61 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.61 8.49 -34.44 -0.29 -13.90 16 8 H 0.05 1.42 7.75 -52.48 -0.41 1.01 16 9 C 0.05 1.12 1.93 -91.73 -0.18 0.94 16 10 C -0.13 -2.34 5.30 -26.61 -0.14 -2.48 16 11 C 0.10 1.58 5.36 -3.71 -0.02 1.56 16 12 N -0.60 -10.54 2.97 -172.77 -0.51 -11.06 16 13 C 0.52 8.87 6.93 -10.98 -0.08 8.80 16 14 O -0.55 -11.42 15.43 5.56 0.09 -11.34 16 15 C -0.10 -1.31 1.66 -91.77 -0.15 -1.46 16 16 H 0.10 1.12 7.19 -51.93 -0.37 0.75 16 17 C -0.12 -1.21 4.83 -26.73 -0.13 -1.34 16 18 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.15 -1.25 5.54 -26.73 -0.15 -1.39 16 20 C 0.11 1.05 3.47 -26.73 -0.09 0.96 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 O -0.57 -5.91 13.32 -35.23 -0.47 -6.38 16 23 C -0.09 -1.20 4.25 -26.73 -0.11 -1.31 16 24 C 0.11 2.17 6.42 -3.71 -0.02 2.15 16 25 C -0.12 -2.67 5.20 -26.61 -0.14 -2.81 16 26 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.03 0.85 8.12 -51.93 -0.42 0.42 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.91 4.65 -51.93 -0.24 0.67 16 32 H 0.08 0.77 6.05 -51.93 -0.31 0.46 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.38 2.12 9.08 45.56 0.41 2.53 16 39 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.53 7.04 -51.93 -0.37 1.17 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 2.25 6.69 -51.93 -0.35 1.90 16 44 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -30.83 335.66 -8.63 -39.46 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.68 Total: 2.32 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.76 Total: -9.76 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.15 Total: -35.20 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.38 Total: -17.72 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.83 -8.63 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336158840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.804 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds