Wall clock time and date at job start Tue Mar 31 2020 06:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99695 * 2 1 4 4 H 1.48507 * 109.47012 * 269.99240 * 3 2 1 5 5 H 1.48499 * 109.47477 * 29.99506 * 3 2 1 6 6 H 1.48503 * 109.47090 * 149.99962 * 3 2 1 7 7 C 1.37878 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00082 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.53041 * 109.46027 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31103 * 181.37119 * 10 9 7 12 12 N 1.46923 * 108.77534 * 305.36635 * 11 10 9 13 13 C 1.34778 * 120.63049 * 233.58540 * 12 11 10 14 14 O 1.21283 * 119.99982 * 4.36307 * 13 12 11 15 15 C 1.50705 * 120.00373 * 184.36595 * 13 12 11 16 16 H 1.09000 * 109.46777 * 322.16478 * 15 13 12 17 17 C 1.53007 * 109.47025 * 82.15695 * 15 13 12 18 18 C 1.52995 * 109.46828 * 180.02562 * 17 15 13 19 19 C 1.53001 * 109.47018 * 300.00044 * 18 17 15 20 20 C 1.52999 * 109.47153 * 60.00258 * 19 18 17 21 21 H 1.09003 * 109.47002 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.46976 * 59.99917 * 20 19 18 23 23 C 1.52993 * 109.47305 * 202.15756 * 15 13 12 24 24 C 1.46928 * 118.74130 * 53.86034 * 12 11 10 25 25 C 1.53046 * 109.44682 * 300.06406 * 9 7 2 26 26 H 0.96996 * 119.99688 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45871 * 60.02635 * 9 7 2 28 28 H 1.08999 * 109.49507 * 61.42380 * 10 9 7 29 29 H 1.08998 * 109.52283 * 301.33384 * 10 9 7 30 30 H 1.08998 * 109.58728 * 185.57450 * 11 10 9 31 31 H 1.09004 * 109.58621 * 65.15240 * 11 10 9 32 32 H 1.09000 * 109.46704 * 60.00738 * 17 15 13 33 33 H 1.08995 * 109.46886 * 300.00631 * 17 15 13 34 34 H 1.08991 * 109.47338 * 60.00074 * 18 17 15 35 35 H 1.08996 * 109.47032 * 180.02562 * 18 17 15 36 36 H 1.09005 * 109.46925 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47208 * 300.00039 * 19 18 17 38 38 H 0.96704 * 114.00075 * 60.00457 * 22 20 19 39 39 H 1.09004 * 109.46979 * 60.00051 * 23 15 13 40 40 H 1.08990 * 109.47676 * 300.00243 * 23 15 13 41 41 H 1.08998 * 109.58704 * 65.92727 * 24 12 11 42 42 H 1.09003 * 109.58851 * 186.34948 * 24 12 11 43 43 H 1.08998 * 109.49286 * 298.56677 * 25 9 7 44 44 H 1.08996 * 109.49954 * 58.66662 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 6 4.0214 -2.6371 0.0010 11 6 5.5529 -2.6332 0.0362 12 7 6.0495 -1.8177 -1.0804 13 6 6.9439 -2.3212 -1.9540 14 8 7.2867 -3.4815 -1.8698 15 6 7.5182 -1.4424 -3.0352 16 1 6.7431 -0.7739 -3.4100 17 6 8.6710 -0.6157 -2.4619 18 6 9.2536 0.2769 -3.5595 19 6 9.7717 -0.5954 -4.7047 20 6 8.6190 -1.4221 -5.2780 21 1 8.9880 -2.0432 -6.0942 22 8 7.6026 -0.5458 -5.7689 23 6 8.0365 -2.3151 -4.1800 24 6 5.5573 -0.4407 -1.2232 25 6 4.0216 -0.4714 -1.2478 26 1 -0.4849 0.8400 -0.0004 27 1 3.8743 -0.6804 0.8914 28 1 3.6795 -3.1436 -0.9016 29 1 3.6387 -3.1587 0.8782 30 1 5.9233 -3.6535 -0.0635 31 1 5.8957 -2.2084 0.9797 32 1 9.4462 -1.2842 -2.0871 33 1 8.3018 0.0059 -1.6463 34 1 8.4783 0.9452 -3.9339 35 1 10.0751 0.8655 -3.1512 36 1 10.1872 0.0405 -5.4865 37 1 10.5471 -1.2638 -4.3302 38 1 7.9018 0.0505 -6.4690 39 1 7.2152 -2.9040 -4.5885 40 1 8.8115 -2.9835 -3.8053 41 1 5.9004 0.1593 -0.3803 42 1 5.9306 -0.0138 -2.1541 43 1 3.6797 -0.9988 -2.1383 44 1 3.6389 0.5491 -1.2594 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336158841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:23 Heat of formation + Delta-G solvation = -104.981079 kcal Electronic energy + Delta-G solvation = -23532.536161 eV Core-core repulsion = 20255.742541 eV Total energy + Delta-G solvation = -3276.793620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42165 -38.69351 -36.98957 -35.15088 -33.51451 -31.77073 -31.11897 -30.42731 -29.80273 -26.52305 -24.12879 -22.75554 -22.55801 -22.33185 -20.38372 -19.53507 -18.45516 -17.11174 -16.97802 -16.63372 -16.06477 -15.27258 -14.95883 -14.66145 -14.55400 -14.17133 -13.58692 -13.45744 -13.22440 -13.02080 -12.70371 -12.59336 -12.55399 -12.33048 -12.03346 -11.96246 -11.72545 -11.28645 -11.08484 -11.01195 -10.84661 -10.74070 -10.48175 -10.17165 -10.09505 -9.88734 -9.74639 -9.37847 -9.24889 -9.05643 -8.56278 -8.14583 -6.09143 -4.08320 2.88763 3.21804 3.30848 3.32132 3.38234 4.06274 4.37341 4.45034 4.49837 4.65306 4.91951 4.96585 5.04030 5.16135 5.19503 5.26623 5.34003 5.39603 5.56043 5.61764 5.67097 5.70139 5.76920 5.83264 5.85954 5.90498 5.98145 5.98860 6.04139 6.13229 6.22087 6.27403 6.32242 6.66120 6.66503 6.78607 6.94089 7.19714 7.47837 7.49390 7.72767 7.78721 8.46786 8.50795 8.95391 9.52845 11.04341 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022130 B = 0.004948 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.972146 B = 5657.022550 C = 6235.611869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.113 4.113 11 C 0.108 3.892 12 N -0.600 5.600 13 C 0.517 3.483 14 O -0.556 6.556 15 C -0.104 4.104 16 H 0.104 0.896 17 C -0.107 4.107 18 C -0.113 4.113 19 C -0.153 4.153 20 C 0.105 3.895 21 H 0.056 0.944 22 O -0.561 6.561 23 C -0.092 4.092 24 C 0.099 3.901 25 C -0.135 4.135 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.374 0.626 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.164 1.687 -8.752 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.151 4.151 11 C -0.014 4.014 12 N -0.332 5.332 13 C 0.305 3.695 14 O -0.435 6.435 15 C -0.125 4.125 16 H 0.122 0.878 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.191 4.191 20 C 0.046 3.954 21 H 0.074 0.926 22 O -0.366 6.366 23 C -0.130 4.130 24 C -0.023 4.023 25 C -0.173 4.173 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.220 0.780 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.808 0.858 -8.232 21.467 hybrid contribution 0.556 1.389 -0.442 1.559 sum 20.364 2.247 -8.674 22.247 Atomic orbital electron populations 1.69903 1.06306 1.26912 1.50807 1.25045 0.94699 0.99044 0.94532 0.86870 0.79990 0.83678 0.77853 1.20494 1.22479 1.18997 1.21056 0.88759 0.94501 1.50756 0.90852 1.19131 0.96794 0.91727 0.92776 1.21816 0.91850 0.99511 1.01901 1.21761 0.96094 0.95776 0.87816 1.48148 1.42135 1.14649 1.28291 1.20610 0.78713 0.87878 0.82262 1.90627 1.61437 1.17796 1.73657 1.21272 0.99189 0.97731 0.94338 0.87842 1.21465 0.96871 0.98069 0.98116 1.21426 1.00577 0.97758 0.95257 1.22270 0.98412 0.99470 0.98904 1.21820 0.87663 0.90637 0.95284 0.92606 1.86582 1.38411 1.53641 1.58009 1.21379 1.01862 0.96514 0.93240 1.22086 0.96934 0.81878 1.01424 1.22452 0.91485 1.01049 1.02302 0.92671 0.95436 0.92312 0.91417 0.89904 0.92131 0.91533 0.91306 0.91013 0.91835 0.91782 0.90971 0.77958 0.90921 0.89662 0.91861 0.90357 0.91553 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 3 Si 0.89 21.27 24.38 -169.99 -4.14 17.12 16 4 H -0.28 -6.45 6.86 56.52 0.39 -6.06 16 5 H -0.30 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 7 C -0.51 -14.18 9.14 -34.44 -0.31 -14.49 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 9 C 0.01 0.33 1.66 -91.73 -0.15 0.18 16 10 C -0.11 -2.25 5.30 -26.61 -0.14 -2.39 16 11 C 0.11 1.88 6.44 -3.71 -0.02 1.86 16 12 N -0.60 -10.29 2.97 -172.50 -0.51 -10.80 16 13 C 0.52 8.66 6.83 -10.98 -0.08 8.58 16 14 O -0.56 -10.78 15.47 5.55 0.09 -10.70 16 15 C -0.10 -1.38 1.55 -91.77 -0.14 -1.52 16 16 H 0.10 1.43 5.77 -51.93 -0.30 1.13 16 17 C -0.11 -1.17 5.14 -26.73 -0.14 -1.31 16 18 C -0.11 -0.98 5.78 -26.73 -0.15 -1.14 16 19 C -0.15 -1.17 5.64 -26.73 -0.15 -1.33 16 20 C 0.10 0.97 3.77 -26.71 -0.10 0.87 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 22 O -0.56 -5.56 11.97 -35.23 -0.42 -5.98 16 23 C -0.09 -1.12 4.44 -26.71 -0.12 -1.24 16 24 C 0.10 1.65 5.95 -3.49 -0.02 1.63 16 25 C -0.13 -2.78 4.86 -26.38 -0.13 -2.91 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 7.76 -51.93 -0.40 0.35 16 34 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.37 2.11 9.08 45.56 0.41 2.52 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.04 7.88 -51.93 -0.41 0.63 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.13 5.41 -51.93 -0.28 0.85 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.06 1.24 3.24 -51.93 -0.17 1.07 16 LS Contribution 328.07 15.07 4.94 4.94 Total: -1.00 -32.30 328.07 -7.57 -39.87 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.53 Total: 3.52 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.76 Total: -11.36 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.26 Total: -37.42 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.34 Total: -16.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.14 Total: 17.12 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.30 -7.57 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336158841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.113 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds