Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00035 * 2 1 4 4 H 1.48490 * 109.47246 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46672 * 299.99749 * 3 2 1 6 6 H 1.48501 * 109.46757 * 59.99067 * 3 2 1 7 7 C 1.37879 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99430 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47502 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99770 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00346 * 180.02562 * 11 10 9 14 14 C 1.46934 * 120.63134 * 180.02562 * 13 11 10 15 15 C 1.53201 * 108.75923 * 126.31089 * 14 13 11 16 16 C 1.52977 * 109.32963 * 54.56865 * 15 14 13 17 17 C 1.53119 * 109.48735 * 58.96303 * 16 15 14 18 18 C 1.53116 * 109.14338 * 62.87332 * 17 16 15 19 19 O 1.42905 * 109.40637 * 57.53397 * 18 17 16 20 20 C 1.42893 * 114.13926 * 298.84530 * 19 18 17 21 21 C 1.53111 * 109.40742 * 61.15589 * 20 19 18 22 22 C 1.52955 * 109.67221 * 298.76414 * 16 15 14 23 23 C 1.46926 * 120.62935 * 359.97438 * 13 11 10 24 24 H 0.96998 * 120.00337 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46853 * 60.00747 * 9 7 2 26 26 H 1.08990 * 109.47460 * 300.00376 * 9 7 2 27 27 H 1.09004 * 109.46911 * 60.00392 * 10 9 7 28 28 H 1.09001 * 109.47388 * 300.01101 * 10 9 7 29 29 H 1.08995 * 109.58785 * 6.52643 * 14 13 11 30 30 H 1.08999 * 109.71153 * 246.16524 * 14 13 11 31 31 H 1.08994 * 109.49293 * 294.60769 * 15 14 13 32 32 H 1.08998 * 109.51575 * 174.54505 * 15 14 13 33 33 H 1.08993 * 109.53086 * 302.97291 * 17 16 15 34 34 H 1.09003 * 109.52534 * 182.77097 * 17 16 15 35 35 H 1.09007 * 109.47931 * 177.51235 * 18 17 16 36 36 H 1.08999 * 109.48053 * 297.53798 * 18 17 16 37 37 H 1.09001 * 109.48540 * 181.13803 * 20 19 18 38 38 H 1.09005 * 109.48283 * 301.17749 * 20 19 18 39 39 H 1.08993 * 109.52386 * 62.35871 * 21 20 19 40 40 H 1.09001 * 109.52818 * 182.56388 * 21 20 19 41 41 H 1.08995 * 109.49716 * 181.16664 * 22 16 15 42 42 H 1.09000 * 109.49336 * 301.25517 * 22 16 15 43 43 H 1.09003 * 109.58557 * 353.46325 * 23 13 11 44 44 H 1.09007 * 109.58623 * 113.74227 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0015 11 6 1.4918 -4.9671 0.0020 12 8 0.2790 -4.9672 0.0020 13 7 2.1657 -6.1343 0.0024 14 6 1.4451 -7.4148 0.0024 15 6 1.9525 -8.2656 -1.1663 16 6 3.4735 -8.3992 -1.0725 17 6 3.8478 -9.0493 0.2624 18 6 3.2636 -10.4637 0.3133 19 8 3.7518 -11.2194 -0.7970 20 6 3.3911 -10.6842 -2.0719 21 6 3.9804 -9.2787 -2.2188 22 6 4.1186 -7.0155 -1.1658 23 6 3.6349 -6.1504 0.0018 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8918 27 1 2.8725 -3.6039 0.8910 28 1 2.8714 -3.6046 -0.8889 29 1 0.3768 -7.2329 -0.1148 30 1 1.6258 -7.9384 0.9411 31 1 1.6868 -7.7855 -2.1080 32 1 1.4969 -9.2548 -1.1212 33 1 3.4414 -8.4576 1.0825 34 1 4.9330 -9.1000 0.3513 35 1 3.5639 -10.9478 1.2427 36 1 2.1759 -10.4097 0.2665 37 1 3.7831 -11.3269 -2.8602 38 1 2.3051 -10.6330 -2.1507 39 1 5.0683 -9.3341 -2.1817 40 1 3.6687 -8.8507 -3.1716 41 1 5.2030 -7.1158 -1.1195 42 1 3.8363 -6.5454 -2.1078 43 1 4.0114 -5.1343 -0.1159 44 1 3.9961 -6.5674 0.9419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336474947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -102.045620 kcal Electronic energy + Delta-G solvation = -23029.099244 eV Core-core repulsion = 19752.432915 eV Total energy + Delta-G solvation = -3276.666329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98005 -39.10106 -36.98243 -33.96662 -33.51772 -31.73232 -31.37892 -30.64266 -29.00205 -25.91742 -24.94991 -23.93601 -23.33878 -22.09593 -21.21500 -19.11928 -18.04315 -17.15093 -16.37003 -16.31073 -15.82659 -15.38971 -15.27683 -14.97326 -14.78648 -14.61885 -14.40973 -13.80913 -13.48599 -13.11353 -12.81991 -12.56545 -12.34223 -12.16281 -12.10781 -11.92032 -11.59701 -11.33786 -11.20496 -10.97554 -10.95169 -10.79049 -10.61441 -10.55621 -10.31914 -9.96474 -9.68263 -9.56461 -9.16048 -8.96960 -8.38847 -8.30501 -5.96277 -4.00647 3.21586 3.29450 3.32176 3.39519 3.42745 3.61812 4.31741 4.33854 4.44366 4.47176 4.72177 4.84695 4.91358 4.98008 5.01716 5.12956 5.18430 5.25999 5.27859 5.38713 5.39340 5.43034 5.51064 5.55594 5.64238 5.69070 5.76678 5.78797 5.80595 5.93550 5.99688 6.06514 6.19766 6.21765 6.23676 6.75043 6.91512 6.92788 7.74500 7.76825 7.86367 8.07182 8.38513 8.75555 9.08086 9.62921 11.14725 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.003308 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.789758 B = 8462.801842 C = 8739.196635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.623 5.623 14 C 0.110 3.890 15 C -0.128 4.128 16 C -0.057 4.057 17 C -0.149 4.149 18 C 0.059 3.941 19 O -0.385 6.385 20 C 0.059 3.941 21 C -0.144 4.144 22 C -0.123 4.123 23 C 0.108 3.892 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.051 -21.925 -2.097 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.359 5.359 14 C -0.013 4.013 15 C -0.166 4.166 16 C -0.057 4.057 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.303 6.303 20 C -0.018 4.018 21 C -0.182 4.182 22 C -0.161 4.161 23 C -0.016 4.016 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.329 -21.948 -2.069 23.938 hybrid contribution 0.393 1.172 -0.082 1.239 sum 9.722 -20.776 -2.151 23.039 Atomic orbital electron populations 1.70008 1.06058 1.26462 1.50293 1.25031 0.94821 0.99234 0.95325 0.86540 0.80007 0.83859 0.77588 1.19743 1.21020 1.21018 1.21254 0.92933 0.91001 1.51243 0.92583 1.18906 0.93186 0.89410 0.98579 1.21872 1.00701 0.92020 1.02191 1.21581 0.88401 0.85505 0.74213 1.90655 1.14436 1.87171 1.48789 1.48265 1.06362 1.05754 1.75552 1.21474 0.98389 0.84087 0.97318 1.22071 0.94683 1.00051 0.99802 1.20503 0.95382 0.94899 0.94963 1.22343 1.01898 0.96563 0.97876 1.22624 0.97980 0.91587 0.89589 1.87912 1.77147 1.51244 1.14036 1.22610 0.99040 0.94409 0.85727 1.22236 1.01476 0.95676 0.98799 1.21951 1.00148 0.94490 0.99546 1.21698 0.80229 1.01594 0.98047 0.93008 0.95882 0.95853 0.90340 0.90346 0.89152 0.92088 0.91208 0.91014 0.90199 0.90946 0.89065 0.92928 0.89114 0.92965 0.90952 0.90795 0.90744 0.91113 0.88970 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.63 3.98 -27.89 -0.11 -2.74 16 11 C 0.51 10.08 7.70 -10.99 -0.08 9.99 16 12 O -0.54 -12.80 15.40 5.55 0.09 -12.71 16 13 N -0.62 -9.08 2.97 -172.78 -0.51 -9.59 16 14 C 0.11 1.38 5.96 -3.70 -0.02 1.36 16 15 C -0.13 -1.28 4.34 -26.64 -0.12 -1.39 16 16 C -0.06 -0.50 0.51 -154.42 -0.08 -0.58 16 17 C -0.15 -1.21 4.16 -26.61 -0.11 -1.32 16 18 C 0.06 0.48 6.57 37.22 0.24 0.72 16 19 O -0.38 -3.74 10.76 -35.23 -0.38 -4.12 16 20 C 0.06 0.46 6.57 37.21 0.24 0.71 16 21 C -0.14 -1.13 4.92 -26.61 -0.13 -1.26 16 22 C -0.12 -1.14 4.91 -26.67 -0.13 -1.28 16 23 C 0.11 1.20 5.87 -3.73 -0.02 1.18 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 28 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 29 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 30 H 0.06 0.67 6.64 -51.93 -0.35 0.32 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.63 5.00 -51.93 -0.26 0.37 16 33 H 0.08 0.67 5.03 -51.93 -0.26 0.41 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.41 6.63 -51.93 -0.34 0.07 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.05 5.93 -51.93 -0.31 0.75 16 44 H 0.07 0.64 6.80 -51.92 -0.35 0.28 16 LS Contribution 330.23 15.07 4.98 4.98 Total: -1.00 -33.90 330.23 -8.12 -42.02 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -7.15 Total: -3.01 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -0.85 Total: -7.42 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.22 Total: -36.38 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.29 Total: -16.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.90 -8.12 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336474947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.031 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds