Wall clock time and date at job start Tue Mar 31 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 119.99903 * 2 1 4 4 H 1.48498 * 109.46995 * 269.99760 * 3 2 1 5 5 H 1.48504 * 109.47206 * 29.99895 * 3 2 1 6 6 H 1.48505 * 109.47164 * 149.99703 * 3 2 1 7 7 C 1.37881 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99623 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00213 * 180.02562 * 7 2 1 10 10 C 1.53036 * 109.45940 * 180.02562 * 9 7 2 11 11 C 1.53196 * 109.31361 * 181.38780 * 10 9 7 12 12 N 1.46932 * 108.77393 * 305.36568 * 11 10 9 13 13 C 1.34772 * 120.62883 * 233.58591 * 12 11 10 14 14 O 1.21285 * 120.00189 * 183.93253 * 13 12 11 15 15 C 1.50708 * 120.00369 * 3.93171 * 13 12 11 16 16 O 1.42898 * 109.46945 * 300.38745 * 15 13 12 17 17 C 1.52995 * 109.47302 * 180.38544 * 15 13 12 18 18 C 1.52993 * 109.47250 * 180.02562 * 17 15 13 19 19 C 1.53003 * 109.47401 * 59.99879 * 18 17 15 20 20 C 1.53010 * 109.46772 * 300.00485 * 19 18 17 21 21 C 1.52994 * 109.47183 * 59.99564 * 20 19 18 22 22 C 1.46922 * 118.73718 * 53.85811 * 12 11 10 23 23 C 1.53044 * 109.46269 * 300.07350 * 9 7 2 24 24 H 0.96996 * 120.00011 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.44705 * 60.03775 * 9 7 2 26 26 H 1.08998 * 109.50067 * 61.43583 * 10 9 7 27 27 H 1.08999 * 109.50175 * 301.33668 * 10 9 7 28 28 H 1.09006 * 109.58603 * 185.58030 * 11 10 9 29 29 H 1.08993 * 109.58451 * 65.15237 * 11 10 9 30 30 H 0.96697 * 114.00274 * 56.45071 * 16 15 13 31 31 H 1.09001 * 109.47221 * 59.99873 * 17 15 13 32 32 H 1.09000 * 109.46995 * 299.99788 * 17 15 13 33 33 H 1.08998 * 109.47248 * 300.00473 * 18 17 15 34 34 H 1.08995 * 109.47543 * 179.97438 * 18 17 15 35 35 H 1.09000 * 109.47169 * 60.00072 * 19 18 17 36 36 H 1.08994 * 109.47833 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.46976 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.46893 * 299.99295 * 20 19 18 39 39 H 1.09001 * 109.46750 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47050 * 60.00234 * 21 20 19 41 41 H 1.08995 * 109.58768 * 65.92826 * 22 12 11 42 42 H 1.09001 * 109.58452 * 186.35182 * 22 12 11 43 43 H 1.09005 * 109.49691 * 298.56617 * 23 9 7 44 44 H 1.09002 * 109.49609 * 58.66428 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0214 -2.6369 0.0010 11 6 5.5529 -2.6332 0.0366 12 7 6.0499 -1.8174 -1.0799 13 6 6.9444 -2.3209 -1.9532 14 8 7.4009 -1.6157 -2.8280 15 6 7.3776 -3.7601 -1.8427 16 8 7.9725 -3.9816 -0.5625 17 6 8.3976 -4.0714 -2.9398 18 6 8.8369 -5.5326 -2.8280 19 6 7.6194 -6.4451 -2.9899 20 6 6.5994 -6.1337 -1.8927 21 6 6.1602 -4.6724 -2.0045 22 6 5.5576 -0.4405 -1.2226 23 6 4.0219 -0.4712 -1.2476 24 1 -0.4850 0.8400 -0.0004 25 1 3.8741 -0.6805 0.8915 26 1 3.6798 -3.1435 -0.9017 27 1 3.6385 -3.1582 0.8783 28 1 5.9233 -3.6535 -0.0632 29 1 5.8954 -2.2085 0.9802 30 1 7.4001 -3.7520 0.1823 31 1 9.2648 -3.4211 -2.8247 32 1 7.9438 -3.9025 -3.9163 33 1 9.2905 -5.7020 -1.8515 34 1 9.5632 -5.7545 -3.6098 35 1 7.1658 -6.2758 -3.9664 36 1 7.9322 -7.4861 -2.9098 37 1 5.7318 -6.7834 -2.0083 38 1 7.0530 -6.3031 -0.9163 39 1 5.4331 -4.4508 -1.2232 40 1 5.7065 -4.5031 -2.9811 41 1 5.9005 0.1593 -0.3796 42 1 5.9311 -0.0136 -2.1534 43 1 3.6802 -0.9984 -2.1384 44 1 3.6393 0.5494 -1.2591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336507233.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:55 Heat of formation + Delta-G solvation = -87.631797 kcal Electronic energy + Delta-G solvation = -24030.770253 eV Core-core repulsion = 20754.728955 eV Total energy + Delta-G solvation = -3276.041299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.03903 -38.29648 -37.16213 -35.43567 -33.59885 -31.59575 -31.21942 -30.63057 -29.87731 -26.72591 -23.90003 -23.37037 -22.75315 -22.04318 -20.36480 -19.93758 -19.02598 -17.17392 -16.98137 -16.37050 -16.22557 -15.19392 -14.84037 -14.78038 -14.39384 -14.27968 -13.82861 -13.35726 -13.21785 -13.11733 -12.65345 -12.59775 -12.51591 -12.28585 -12.13969 -11.99449 -11.89461 -11.42869 -11.07931 -11.03034 -10.86506 -10.71894 -10.59203 -10.26924 -10.16217 -9.99971 -9.82529 -9.54030 -9.20878 -9.11476 -8.61812 -8.31763 -6.15570 -4.15664 2.61143 3.09223 3.20954 3.30333 3.33983 4.07179 4.32151 4.32653 4.51322 4.60799 4.84934 5.00277 5.06435 5.09127 5.14659 5.28913 5.38091 5.39660 5.47077 5.56400 5.65336 5.67030 5.74723 5.82091 5.87149 5.94539 5.97607 6.05058 6.08347 6.13556 6.14212 6.17611 6.34933 6.43447 6.55714 6.69995 6.76673 7.06131 7.33460 7.37619 7.56684 7.66176 8.23278 8.41807 8.87595 9.46425 10.97574 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030547 B = 0.004934 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.397106 B = 5673.642126 C = 6127.687185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.114 4.114 11 C 0.078 3.922 12 N -0.598 5.598 13 C 0.491 3.509 14 O -0.541 6.541 15 C 0.128 3.872 16 O -0.549 6.549 17 C -0.088 4.088 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.160 4.160 22 C 0.105 3.895 23 C -0.134 4.134 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.377 0.623 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.930 -10.555 -2.060 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.003 4.003 10 C -0.152 4.152 11 C -0.044 4.044 12 N -0.331 5.331 13 C 0.277 3.723 14 O -0.419 6.419 15 C 0.085 3.915 16 O -0.359 6.359 17 C -0.126 4.126 18 C -0.153 4.153 19 C -0.159 4.159 20 C -0.149 4.149 21 C -0.198 4.198 22 C -0.016 4.016 23 C -0.172 4.172 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.229 0.771 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.490 -10.256 -2.872 18.798 hybrid contribution -0.354 1.328 0.344 1.416 sum 15.136 -8.929 -2.528 17.754 Atomic orbital electron populations 1.69887 1.06307 1.27040 1.50455 1.25025 0.94689 0.99058 0.94370 0.86889 0.79940 0.83687 0.77969 1.20493 1.22398 1.19023 1.21000 0.88584 0.94508 1.51265 0.90796 1.19120 0.96935 0.91293 0.92996 1.21847 0.90855 1.00257 1.02210 1.22450 0.97949 0.94687 0.89315 1.48198 1.42053 1.14836 1.28006 1.21426 0.78946 0.90242 0.81664 1.90656 1.55404 1.60720 1.35075 1.21390 0.94493 0.89708 0.85947 1.86619 1.46073 1.88784 1.14382 1.21307 0.98171 0.97004 0.96131 1.21486 0.97508 0.93890 1.02398 1.21570 0.96152 0.99189 0.98955 1.21431 0.98859 0.94856 0.99801 1.22566 0.96941 0.95819 1.04458 1.21893 0.96188 0.81440 1.02119 1.22453 0.91548 1.01166 1.02000 0.92576 0.95313 0.91942 0.90959 0.89606 0.90968 0.77111 0.90741 0.90149 0.91016 0.91942 0.92083 0.91964 0.91614 0.91135 0.89341 0.90398 0.91971 0.89895 0.91667 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.88 21.18 24.38 -169.99 -4.14 17.04 16 4 H -0.28 -6.54 6.86 56.52 0.39 -6.16 16 5 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 7 C -0.52 -13.64 9.14 -34.44 -0.31 -13.96 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.02 0.33 1.65 -91.73 -0.15 0.18 16 10 C -0.11 -1.92 5.00 -26.61 -0.13 -2.05 16 11 C 0.08 1.05 4.36 -3.71 -0.02 1.04 16 12 N -0.60 -9.58 2.96 -172.50 -0.51 -10.09 16 13 C 0.49 8.01 6.75 -10.98 -0.07 7.94 16 14 O -0.54 -10.52 15.41 5.55 0.09 -10.44 16 15 C 0.13 1.66 0.66 -91.77 -0.06 1.60 16 16 O -0.55 -6.64 11.60 -35.23 -0.41 -7.05 16 17 C -0.09 -1.10 4.23 -26.74 -0.11 -1.21 16 18 C -0.12 -1.15 5.78 -26.73 -0.15 -1.31 16 19 C -0.12 -1.10 5.92 -26.72 -0.16 -1.26 16 20 C -0.11 -1.07 5.78 -26.73 -0.15 -1.23 16 21 C -0.16 -1.84 4.53 -26.74 -0.12 -1.96 16 22 C 0.11 1.89 6.45 -3.49 -0.02 1.87 16 23 C -0.13 -2.75 4.86 -26.39 -0.13 -2.88 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.06 1.09 7.74 -51.93 -0.40 0.69 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 0.93 2.72 -51.93 -0.14 0.79 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.38 3.77 5.51 45.56 0.25 4.02 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 33 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 39 H 0.09 1.01 4.31 -51.93 -0.22 0.79 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 1.52 7.03 -51.93 -0.36 1.16 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.06 1.28 3.24 -51.93 -0.17 1.11 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -30.89 318.25 -7.58 -38.46 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.47 Total: 4.64 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -1.70 Total: -11.37 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.26 Total: -36.09 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.32 Total: -17.48 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -7.58 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336507233.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.170 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds