Wall clock time and date at job start Tue Mar 31 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47231 * 269.99668 * 3 2 1 5 5 H 1.48499 * 109.47342 * 30.00193 * 3 2 1 6 6 H 1.48505 * 109.46935 * 149.99895 * 3 2 1 7 7 C 1.37881 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99733 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00081 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99537 * 269.99553 * 10 9 7 12 12 C 1.52998 * 109.47320 * 269.99999 * 11 10 9 13 13 C 1.53001 * 117.50250 * 243.75090 * 12 11 10 14 14 C 1.52993 * 117.49859 * 175.08875 * 12 11 10 15 15 C 1.34777 * 120.00199 * 90.00203 * 10 9 7 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 10 9 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 10 9 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 10 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 H 1.09003 * 110.27384 * 55.63982 * 19 18 17 21 21 C 1.54956 * 110.30887 * 177.83231 * 19 18 17 22 22 C 1.55303 * 100.94005 * 155.36209 * 21 19 18 23 23 C 1.54383 * 102.25115 * 325.86328 * 22 21 19 24 24 O 1.43232 * 107.58836 * 21.36273 * 23 22 21 25 25 H 0.97004 * 119.99796 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46867 * 59.99962 * 9 7 2 27 27 H 1.09005 * 109.46937 * 299.99970 * 9 7 2 28 28 H 1.08994 * 109.46996 * 30.00327 * 11 10 9 29 29 H 1.09001 * 109.46578 * 150.00190 * 11 10 9 30 30 H 1.09001 * 115.54991 * 29.41912 * 12 11 10 31 31 H 1.08997 * 117.49565 * 359.97438 * 13 12 11 32 32 H 1.08994 * 117.49846 * 145.01594 * 13 12 11 33 33 H 1.09000 * 117.49956 * 214.97916 * 14 12 11 34 34 H 1.09001 * 117.49952 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 10 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 10 37 37 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 38 38 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 39 39 H 1.08998 * 111.12459 * 273.28095 * 21 19 18 40 40 H 1.08999 * 111.12523 * 37.44132 * 21 19 18 41 41 H 1.09004 * 110.84419 * 207.67837 * 22 21 19 42 42 H 1.08995 * 111.02394 * 84.13517 * 22 21 19 43 43 H 1.09000 * 109.83377 * 261.83947 * 23 22 21 44 44 H 1.09005 * 109.82573 * 140.87685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9997 -2.5754 0.0010 11 6 4.2434 -3.2662 1.2698 12 6 5.6883 -3.0260 1.7120 13 6 6.6125 -4.2423 1.7976 14 6 6.1089 -3.5715 3.0781 15 6 4.2248 -3.2105 -1.1662 16 8 4.0227 -2.6387 -2.2165 17 6 4.7211 -4.6335 -1.1663 18 6 4.8864 -5.1159 -2.6088 19 6 5.3909 -6.5603 -2.6088 20 1 4.7197 -7.1948 -2.0300 21 6 5.5135 -7.0871 -4.0609 22 6 6.5831 -8.1987 -3.8819 23 6 7.4866 -7.6091 -2.7775 24 8 6.7223 -6.6235 -2.0734 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.5624 -2.8822 2.0292 29 1 4.0764 -4.3354 1.1391 30 1 6.1276 -2.0818 1.3901 31 1 6.1910 -5.2138 1.5393 32 1 7.6598 -4.0983 1.5324 33 1 6.8253 -2.9865 3.6548 34 1 5.3561 -4.1012 3.6620 35 1 5.6821 -4.6831 -0.6542 36 1 4.0015 -5.2693 -0.6507 37 1 3.9254 -5.0663 -3.1209 38 1 5.6060 -4.4800 -3.1244 39 1 4.5682 -7.5038 -4.4087 40 1 5.8674 -6.3059 -4.7337 41 1 7.1450 -8.3484 -4.8039 42 1 6.1262 -9.1317 -3.5522 43 1 8.3646 -7.1449 -3.2267 44 1 7.7944 -8.3981 -2.0913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349431239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:44 Heat of formation + Delta-G solvation = -68.387757 kcal Electronic energy + Delta-G solvation = -22660.652632 eV Core-core repulsion = 19385.445818 eV Total energy + Delta-G solvation = -3275.206814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.72164 -39.04857 -37.15765 -34.52436 -33.34585 -32.40834 -32.20191 -29.22233 -27.94178 -26.20744 -24.28214 -22.26196 -22.16368 -21.67060 -20.75968 -20.59018 -18.23305 -17.03982 -16.84336 -16.71142 -15.76571 -15.41669 -15.24160 -14.71855 -14.67093 -14.00732 -13.95934 -13.61228 -13.17653 -12.94281 -12.59322 -12.46381 -12.21862 -11.93784 -11.76889 -11.55651 -11.41524 -11.40438 -11.38193 -10.97655 -10.87652 -10.83818 -10.68907 -10.46920 -10.25045 -10.07420 -9.78747 -9.57156 -9.48636 -8.87349 -8.55137 -7.65488 -6.05279 -4.03362 3.32085 3.38013 3.40099 3.46314 3.70795 3.78565 4.03026 4.33038 4.43150 4.58708 4.71099 4.89130 4.97667 5.04838 5.07086 5.07760 5.23574 5.28055 5.39564 5.45105 5.50423 5.53130 5.54483 5.62739 5.69020 5.72905 5.78637 5.89354 5.94761 5.97372 6.01125 6.10857 6.21408 6.30243 6.44259 6.46468 6.77758 6.97232 7.01235 7.42783 7.66042 8.34525 8.51680 8.97430 9.08485 9.55725 11.08206 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.004491 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.963882 B = 6232.538849 C = 7347.965681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.215 3.785 10 N -0.592 5.592 11 C 0.143 3.857 12 C -0.167 4.167 13 C -0.180 4.180 14 C -0.178 4.178 15 C 0.509 3.491 16 O -0.545 6.545 17 C -0.137 4.137 18 C -0.101 4.101 19 C 0.080 3.920 20 H 0.071 0.929 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.051 3.949 24 O -0.377 6.377 25 H 0.264 0.736 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.868 -15.892 -0.805 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.323 5.323 11 C 0.019 3.981 12 C -0.187 4.187 13 C -0.217 4.217 14 C -0.215 4.215 15 C 0.297 3.703 16 O -0.422 6.422 17 C -0.177 4.177 18 C -0.139 4.139 19 C 0.023 3.977 20 H 0.089 0.911 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.026 4.026 24 O -0.297 6.297 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.657 -15.314 -1.192 21.231 hybrid contribution 0.273 0.728 -0.044 0.779 sum 14.930 -14.586 -1.237 20.909 Atomic orbital electron populations 1.69903 1.06185 1.26907 1.50771 1.24854 0.94750 0.98923 0.94504 0.86851 0.80203 0.83819 0.78831 1.19957 1.21118 1.19057 1.21345 0.89285 0.94776 1.51070 0.90802 1.19638 0.95557 0.78108 0.97234 1.47866 1.64165 1.15739 1.04483 1.21025 0.93036 0.96906 0.87140 1.22921 0.97004 0.98505 1.00257 1.23048 0.99598 0.97128 1.01926 1.22915 1.03633 1.04253 0.90728 1.20449 0.77817 0.88226 0.83818 1.90650 1.52364 1.68215 1.31016 1.21676 1.02965 0.94424 0.98680 1.21482 1.02404 0.93426 0.96547 1.23084 0.84564 0.97261 0.92757 0.91149 1.23307 0.99738 0.98315 0.97623 1.23115 0.97683 0.99058 0.99607 1.23072 0.94727 0.91293 0.93513 1.88440 1.23469 1.59034 1.58759 0.92630 0.95317 0.94686 0.89445 0.91079 0.87672 0.88657 0.89196 0.89107 0.88717 0.88560 0.89824 0.89902 0.90611 0.89844 0.90043 0.90251 0.90674 0.91590 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 4 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.53 -15.34 9.94 -34.44 -0.34 -15.68 16 8 H 0.07 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.22 5.38 4.23 -5.20 -0.02 5.36 16 10 N -0.59 -12.45 2.46 -175.06 -0.43 -12.88 16 11 C 0.14 2.35 5.50 -4.04 -0.02 2.33 16 12 C -0.17 -2.35 5.97 -90.62 -0.54 -2.89 16 13 C -0.18 -2.09 9.19 -26.69 -0.25 -2.33 16 14 C -0.18 -2.02 10.25 -26.70 -0.27 -2.30 16 15 C 0.51 10.64 7.67 -10.98 -0.08 10.56 16 16 O -0.54 -13.65 15.56 5.55 0.09 -13.56 16 17 C -0.14 -2.12 4.17 -27.88 -0.12 -2.24 16 18 C -0.10 -1.43 4.25 -26.74 -0.11 -1.55 16 19 C 0.08 0.92 3.43 -25.70 -0.09 0.83 16 20 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 21 C -0.15 -1.41 6.57 -24.48 -0.16 -1.57 16 22 C -0.16 -1.20 7.02 -24.79 -0.17 -1.37 16 23 C 0.05 0.46 7.79 37.88 0.30 0.76 16 24 O -0.38 -4.65 10.69 -35.23 -0.38 -5.02 16 25 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 27 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 28 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 29 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 30 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.10 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.39 6.63 -51.93 -0.34 1.05 16 36 H 0.08 1.16 7.40 -51.93 -0.38 0.78 16 37 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 354.48 15.07 5.34 5.34 Total: -1.00 -34.07 354.48 -8.94 -43.01 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.68 Total: 1.14 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.99 Total: -8.07 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.34 Total: -40.12 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.29 Total: -18.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.07 -8.94 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349431239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.381 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds