Wall clock time and date at job start Tue Mar 31 2020 06:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00112 * 2 1 4 4 H 1.48491 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46833 * 299.99969 * 3 2 1 6 6 H 1.48501 * 109.46849 * 59.99733 * 3 2 1 7 7 C 1.37880 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99802 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47046 * 180.02562 * 9 7 2 11 11 C 1.46498 * 120.00173 * 95.82954 * 10 9 7 12 12 C 1.53003 * 109.47217 * 93.25292 * 11 10 9 13 13 C 1.52998 * 117.49826 * 243.74837 * 12 11 10 14 14 C 1.53003 * 117.49842 * 175.09006 * 12 11 10 15 15 C 1.34782 * 120.00124 * 275.82960 * 10 9 7 16 16 O 1.21285 * 119.99892 * 185.07113 * 15 10 9 17 17 C 1.50704 * 119.99683 * 5.07126 * 15 10 9 18 18 H 1.08995 * 109.47256 * 41.37758 * 17 15 10 19 19 C 1.52997 * 109.46964 * 281.37591 * 17 15 10 20 20 C 1.53002 * 109.47281 * 180.02562 * 19 17 15 21 21 C 1.53000 * 109.46801 * 60.00122 * 20 19 17 22 22 C 1.53005 * 109.47246 * 300.00166 * 21 20 19 23 23 H 1.08995 * 109.47052 * 300.00175 * 22 21 20 24 24 O 1.42897 * 109.46993 * 180.02562 * 22 21 20 25 25 C 1.52998 * 109.47097 * 59.99953 * 22 21 20 26 26 H 0.97003 * 119.99759 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47161 * 300.00061 * 9 7 2 28 28 H 1.08996 * 109.47179 * 60.00251 * 9 7 2 29 29 H 1.09006 * 109.47492 * 213.25274 * 11 10 9 30 30 H 1.08999 * 109.47087 * 333.25032 * 11 10 9 31 31 H 1.09001 * 115.54970 * 29.41938 * 12 11 10 32 32 H 1.09005 * 117.49871 * 359.97438 * 13 12 11 33 33 H 1.08998 * 117.50164 * 145.02469 * 13 12 11 34 34 H 1.09007 * 117.49657 * 214.97850 * 14 12 11 35 35 H 1.08999 * 117.49672 * 359.97438 * 14 12 11 36 36 H 1.09005 * 109.47420 * 300.00152 * 19 17 15 37 37 H 1.09006 * 109.47137 * 60.00302 * 19 17 15 38 38 H 1.09005 * 109.46959 * 300.00362 * 20 19 17 39 39 H 1.08998 * 109.47131 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.46697 * 180.02562 * 21 20 19 41 41 H 1.08995 * 109.47238 * 60.00228 * 21 20 19 42 42 H 0.96702 * 114.00401 * 60.00296 * 24 22 21 43 43 H 1.08999 * 109.47343 * 179.97438 * 25 22 21 44 44 H 1.09005 * 109.46908 * 60.00049 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.5802 -4.2525 1.2645 12 6 1.6718 -5.4576 1.5167 13 6 0.7589 -5.4096 2.7435 14 6 1.9802 -6.3323 2.7336 15 6 2.7320 -4.0483 -1.1588 16 8 3.4478 -5.0273 -1.1693 17 6 2.4340 -3.3189 -2.4435 18 1 2.4677 -2.2438 -2.2672 19 6 1.0413 -3.7107 -2.9411 20 6 0.7389 -2.9707 -4.2457 21 6 1.7818 -3.3482 -5.2995 22 6 3.1746 -2.9564 -4.8019 23 1 3.2085 -1.8813 -4.6260 24 8 4.1486 -3.3084 -5.7865 25 6 3.4769 -3.6964 -3.4974 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6248 -2.5570 -0.8897 29 1 3.6169 -4.5845 1.2083 30 1 2.4712 -3.5382 2.0806 31 1 1.2900 -5.9535 0.6243 32 1 0.8057 -4.5196 3.3712 33 1 -0.2234 -5.8742 2.6584 34 1 1.8009 -7.4036 2.6419 35 1 2.8305 -6.0494 3.3542 36 1 1.0075 -4.7859 -3.1174 37 1 0.2982 -3.4422 -2.1900 38 1 0.7727 -1.8955 -4.0697 39 1 -0.2535 -3.2495 -4.5999 40 1 1.5666 -2.8207 -6.2288 41 1 1.7480 -4.4233 -5.4754 42 1 4.0186 -2.8749 -6.6411 43 1 4.4694 -3.4176 -3.1431 44 1 3.4431 -4.7716 -3.6733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352057246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:31 Heat of formation + Delta-G solvation = -85.901875 kcal Electronic energy + Delta-G solvation = -23435.377754 eV Core-core repulsion = 20159.411471 eV Total energy + Delta-G solvation = -3275.966283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.80647 -38.10477 -36.86361 -35.17784 -34.64569 -32.49786 -30.72918 -29.33801 -27.79035 -26.16646 -23.48340 -22.46875 -22.11102 -22.01310 -20.50210 -19.64710 -18.36084 -16.94509 -16.66460 -16.09031 -15.73544 -15.23170 -14.55972 -14.53873 -14.34123 -14.14101 -13.75977 -13.42352 -13.07279 -12.57087 -12.37193 -12.20721 -12.07113 -11.89434 -11.54910 -11.37067 -11.27012 -11.13064 -10.96895 -10.89506 -10.69606 -10.49647 -10.25308 -10.20271 -10.10671 -10.08967 -9.69640 -9.58041 -9.50262 -8.85483 -8.55430 -7.69816 -6.21191 -4.28031 3.18305 3.27704 3.31494 3.43870 3.81570 4.17186 4.29014 4.46612 4.93169 4.95509 5.09491 5.11613 5.22640 5.25834 5.32734 5.45286 5.51328 5.63119 5.69099 5.75972 5.80950 5.85130 5.85657 6.02350 6.13739 6.15927 6.19860 6.25477 6.34335 6.36587 6.37705 6.42884 6.49997 6.59226 6.63718 6.79346 6.87971 7.26206 7.57644 7.74791 7.78093 8.04747 8.36156 8.78643 9.06761 9.39710 10.85008 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009959 B = 0.007876 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.991931 B = 3554.432837 C = 5491.407703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.593 5.593 11 C 0.151 3.849 12 C -0.154 4.154 13 C -0.180 4.180 14 C -0.181 4.181 15 C 0.524 3.476 16 O -0.573 6.573 17 C -0.103 4.103 18 H 0.117 0.883 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.149 4.149 22 C 0.104 3.896 23 H 0.057 0.943 24 O -0.569 6.569 25 C -0.089 4.089 26 H 0.264 0.736 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.372 0.628 43 H 0.067 0.933 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -5.582 -4.660 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.112 3.888 10 N -0.322 5.322 11 C 0.027 3.973 12 C -0.174 4.174 13 C -0.217 4.217 14 C -0.219 4.219 15 C 0.312 3.688 16 O -0.454 6.454 17 C -0.124 4.124 18 H 0.135 0.865 19 C -0.148 4.148 20 C -0.151 4.151 21 C -0.187 4.187 22 C 0.045 3.955 23 H 0.075 0.925 24 O -0.374 6.374 25 C -0.127 4.127 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.218 0.782 43 H 0.086 0.914 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.727 -6.307 -4.141 7.579 hybrid contribution 0.012 1.456 -0.322 1.491 sum 0.739 -4.850 -4.463 6.632 Atomic orbital electron populations 1.69928 1.05924 1.27125 1.49714 1.24918 0.94816 0.99133 0.94785 0.86533 0.80276 0.83484 0.77797 1.19625 1.20808 1.20866 1.21552 0.93625 0.90542 1.51876 0.92085 1.19604 0.87632 0.82545 0.99028 1.48186 1.44817 1.34438 1.04799 1.20841 0.97298 0.92142 0.86976 1.22764 1.02160 0.99785 0.92663 1.23030 0.94734 1.01920 1.01985 1.22893 0.99854 0.96988 1.02138 1.20386 0.79221 0.83672 0.85520 1.90589 1.39905 1.27619 1.87268 1.21224 0.95620 1.03470 0.92073 0.86549 1.21575 0.95936 0.99753 0.97558 1.21442 0.97887 1.01293 0.94477 1.22267 0.95734 1.02049 0.98614 1.21859 0.86736 0.98166 0.88704 0.92466 1.86523 1.53659 1.72705 1.24562 1.21210 0.98758 1.01007 0.91688 0.92604 0.94544 0.93641 0.90975 0.90359 0.88131 0.88665 0.89330 0.89310 0.88988 0.92325 0.89960 0.91049 0.91742 0.92183 0.91405 0.78168 0.91391 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 13.29 55.43 0.74 -22.85 16 2 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 20.04 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.47 8.12 -34.44 -0.28 -13.75 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.23 5.31 4.84 -5.20 -0.03 5.28 16 10 N -0.59 -12.38 2.48 -175.06 -0.43 -12.81 16 11 C 0.15 2.83 5.59 -4.04 -0.02 2.81 16 12 C -0.15 -2.56 5.99 -90.62 -0.54 -3.10 16 13 C -0.18 -2.58 10.18 -26.69 -0.27 -2.85 16 14 C -0.18 -2.47 10.25 -26.69 -0.27 -2.75 16 15 C 0.52 11.01 6.79 -10.98 -0.07 10.93 16 16 O -0.57 -13.13 15.71 5.55 0.09 -13.05 16 17 C -0.10 -1.91 1.73 -91.77 -0.16 -2.07 16 18 H 0.12 2.37 6.53 -51.93 -0.34 2.03 16 19 C -0.11 -1.83 4.96 -26.73 -0.13 -1.96 16 20 C -0.11 -1.60 5.92 -26.73 -0.16 -1.76 16 21 C -0.15 -1.91 5.55 -26.73 -0.15 -2.06 16 22 C 0.10 1.52 3.47 -26.73 -0.09 1.42 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 O -0.57 -7.92 13.32 -35.23 -0.47 -8.39 16 25 C -0.09 -1.55 4.30 -26.73 -0.12 -1.66 16 26 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 27 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 28 H 0.05 1.06 4.70 -51.93 -0.24 0.81 16 29 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 30 H 0.08 1.44 7.78 -51.93 -0.40 1.03 16 31 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 1.47 5.66 -51.93 -0.29 1.18 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.37 3.36 9.08 45.56 0.41 3.78 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -28.65 349.80 -8.92 -37.58 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.70 Total: 9.16 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.39 Total: -9.92 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.30 Total: -35.67 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.38 Total: -21.44 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.65 -8.92 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352057246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.323 kcal (2) G-P(sol) polarization free energy of solvation -28.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds