Wall clock time and date at job start Tue Mar 31 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99774 * 2 1 4 4 H 1.48496 * 109.47521 * 270.00586 * 3 2 1 5 5 H 1.48508 * 109.46989 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.47112 * 149.99900 * 3 2 1 7 7 C 1.37872 * 120.00527 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99978 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00285 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99933 * 264.93832 * 10 9 7 12 12 C 1.53002 * 109.47448 * 264.07052 * 11 10 9 13 13 C 1.52994 * 117.50020 * 243.62326 * 12 11 10 14 14 C 1.52997 * 117.49891 * 174.99907 * 12 11 10 15 15 C 1.34775 * 119.99845 * 84.94222 * 10 9 7 16 16 O 1.21286 * 119.99766 * 185.48511 * 15 10 9 17 17 C 1.50691 * 120.00112 * 5.48052 * 15 10 9 18 18 H 1.08997 * 109.47427 * 311.38881 * 17 15 10 19 19 C 1.53006 * 109.47274 * 71.39007 * 17 15 10 20 20 C 1.52997 * 109.47395 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.47008 * 300.00377 * 20 19 17 22 22 C 1.52996 * 109.47617 * 59.99869 * 21 20 19 23 23 H 1.09001 * 109.47121 * 59.99676 * 22 21 20 24 24 O 1.42895 * 109.47314 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.47038 * 300.00113 * 22 21 20 26 26 H 0.96996 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.47133 * 59.99566 * 9 7 2 28 28 H 1.08994 * 109.47427 * 299.99955 * 9 7 2 29 29 H 1.09007 * 109.47427 * 24.07338 * 11 10 9 30 30 H 1.09006 * 109.47073 * 144.07217 * 11 10 9 31 31 H 1.09008 * 115.54354 * 29.33294 * 12 11 10 32 32 H 1.08998 * 117.50405 * 0.02562 * 13 12 11 33 33 H 1.09012 * 117.49405 * 145.01985 * 13 12 11 34 34 H 1.08999 * 117.49829 * 214.98012 * 14 12 11 35 35 H 1.09001 * 117.50141 * 0.02562 * 14 12 11 36 36 H 1.08998 * 109.47013 * 299.99919 * 19 17 15 37 37 H 1.09000 * 109.46489 * 59.99589 * 19 17 15 38 38 H 1.09001 * 109.46808 * 60.00136 * 20 19 17 39 39 H 1.09000 * 109.47095 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47139 * 299.99556 * 21 20 19 41 41 H 1.09006 * 109.47193 * 180.02562 * 21 20 19 42 42 H 0.96699 * 114.00425 * 300.00096 * 24 22 21 43 43 H 1.08997 * 109.47247 * 299.99981 * 25 22 21 44 44 H 1.09002 * 109.47429 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.3503 -3.2281 1.2628 12 6 5.8564 -3.1029 1.5014 13 6 6.6754 -4.3945 1.5390 14 6 6.4064 -3.6215 2.8316 15 6 4.1272 -3.2450 -1.1636 16 8 4.4357 -4.4179 -1.1569 17 6 3.8861 -2.5366 -2.4716 18 1 2.9461 -1.9873 -2.4194 19 6 5.0329 -1.5605 -2.7420 20 6 4.7884 -0.8418 -4.0704 21 6 4.7165 -1.8702 -5.2009 22 6 3.5698 -2.8462 -4.9306 23 1 2.6297 -2.2969 -4.8788 24 8 3.5024 -3.8063 -5.9868 25 6 3.8143 -3.5649 -3.6022 26 1 -0.4850 0.8400 0.0004 27 1 3.8753 -0.6801 0.8889 28 1 3.8746 -0.6799 -0.8911 29 1 3.8118 -2.7492 2.0807 30 1 4.0763 -4.2821 1.2153 31 1 6.3285 -2.2193 1.0717 32 1 6.1415 -5.3336 1.3933 33 1 7.6869 -4.3610 1.1337 34 1 7.2407 -3.0795 3.2768 35 1 5.6954 -4.0522 3.5366 36 1 5.0843 -0.8282 -1.9364 37 1 5.9728 -2.1099 -2.7941 38 1 3.8483 -0.2925 -4.0186 39 1 5.6052 -0.1461 -4.2628 40 1 5.6566 -2.4195 -5.2527 41 1 4.5428 -1.3581 -6.1474 42 1 3.3486 -3.4203 -6.8600 43 1 4.7543 -4.1142 -3.6539 44 1 2.9971 -4.2600 -3.4093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352057247.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:38 Heat of formation + Delta-G solvation = -79.707822 kcal Electronic energy + Delta-G solvation = -23509.175721 eV Core-core repulsion = 20233.478031 eV Total energy + Delta-G solvation = -3275.697689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -39.91987 -38.18370 -36.90203 -35.27358 -34.77814 -32.47851 -30.82601 -29.45003 -28.33106 -26.41282 -23.33717 -22.41367 -22.17350 -22.01207 -20.54946 -19.72694 -18.42376 -17.05249 -16.99489 -16.41235 -15.72313 -15.21513 -14.73081 -14.50451 -14.29564 -14.21778 -13.88811 -13.60846 -13.03585 -12.80372 -12.56443 -12.35642 -12.19520 -12.02850 -11.74152 -11.46250 -11.32678 -11.27014 -10.97346 -10.89526 -10.76546 -10.49797 -10.36823 -10.32870 -10.19441 -10.13155 -9.66195 -9.63609 -9.59454 -8.92515 -8.73386 -7.74528 -6.24064 -4.25523 3.13251 3.21896 3.23321 3.37153 3.70712 4.08627 4.23171 4.37905 4.83337 4.86181 5.02546 5.05780 5.13161 5.18137 5.24776 5.35695 5.39265 5.53283 5.57620 5.65704 5.70631 5.75491 5.79710 5.90296 6.04203 6.08348 6.11969 6.16150 6.22635 6.23042 6.27309 6.32505 6.35851 6.46090 6.55565 6.58299 6.72661 6.75277 7.37428 7.42168 7.75042 8.15025 8.39818 8.81501 8.97447 9.35236 10.88581 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.009937 B = 0.008309 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.960400 B = 3368.907019 C = 5269.984266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.868 3.132 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.202 3.798 10 N -0.589 5.589 11 C 0.150 3.850 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.181 4.181 15 C 0.530 3.470 16 O -0.564 6.564 17 C -0.105 4.105 18 H 0.114 0.886 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.103 3.897 23 H 0.058 0.942 24 O -0.568 6.568 25 C -0.087 4.087 26 H 0.266 0.734 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.373 0.627 43 H 0.072 0.928 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.977 -0.854 -4.991 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.081 3.919 10 N -0.319 5.319 11 C 0.026 3.974 12 C -0.181 4.181 13 C -0.209 4.209 14 C -0.219 4.219 15 C 0.318 3.682 16 O -0.444 6.444 17 C -0.126 4.126 18 H 0.132 0.868 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.187 4.187 22 C 0.045 3.955 23 H 0.076 0.924 24 O -0.373 6.373 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.219 0.781 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.057 -1.737 -4.463 12.049 hybrid contribution 0.143 1.568 -0.348 1.612 sum 11.200 -0.169 -4.811 12.191 Atomic orbital electron populations 1.69893 1.06215 1.27172 1.49467 1.24870 0.94698 0.98810 0.94299 0.86972 0.80545 0.84081 0.78964 1.19746 1.20888 1.18824 1.21408 0.89127 0.95008 1.52371 0.90402 1.19995 0.95819 0.78279 0.97830 1.47829 1.63397 1.15677 1.05006 1.20859 0.91201 0.98667 0.86629 1.22796 0.96545 0.98163 1.00618 1.22941 1.00819 0.96344 1.00787 1.22916 1.03250 1.04618 0.91077 1.20276 0.76031 0.86403 0.85502 1.90593 1.49683 1.16300 1.87822 1.21215 1.02133 0.97098 0.92123 0.86767 1.21622 0.97496 0.98088 0.97884 1.21475 1.02454 0.97412 0.94043 1.22261 1.00092 0.97700 0.98603 1.21860 0.96961 0.88988 0.87719 0.92355 1.86527 1.95675 1.36653 1.18468 1.21183 1.03619 0.97192 0.90521 0.92362 0.94868 0.94532 0.89915 0.90790 0.88115 0.88641 0.89561 0.89212 0.88841 0.90463 0.91895 0.91171 0.91641 0.91316 0.92061 0.78120 0.90885 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.96 55.43 0.77 -24.73 16 2 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 7 C -0.54 -13.99 9.31 -34.44 -0.32 -14.31 16 8 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 9 C 0.20 4.34 3.77 -5.19 -0.02 4.32 16 10 N -0.59 -11.92 2.48 -175.05 -0.43 -12.36 16 11 C 0.15 2.72 5.65 -4.04 -0.02 2.70 16 12 C -0.16 -2.51 5.97 -90.62 -0.54 -3.05 16 13 C -0.17 -2.43 10.18 -26.74 -0.27 -2.70 16 14 C -0.18 -2.31 10.25 -26.73 -0.27 -2.59 16 15 C 0.53 10.85 6.83 -10.99 -0.08 10.77 16 16 O -0.56 -12.65 15.63 5.55 0.09 -12.57 16 17 C -0.10 -1.88 1.69 -91.77 -0.16 -2.03 16 18 H 0.11 2.26 7.04 -51.93 -0.37 1.90 16 19 C -0.11 -1.72 4.89 -26.73 -0.13 -1.85 16 20 C -0.12 -1.50 5.92 -26.73 -0.16 -1.66 16 21 C -0.15 -1.79 5.54 -26.73 -0.15 -1.94 16 22 C 0.10 1.46 3.47 -26.73 -0.09 1.37 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 24 O -0.57 -7.76 13.32 -35.23 -0.47 -8.23 16 25 C -0.09 -1.49 4.22 -26.73 -0.11 -1.60 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 27 H 0.03 0.71 7.09 -51.92 -0.37 0.34 16 28 H 0.04 0.75 3.91 -51.93 -0.20 0.55 16 29 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 30 H 0.07 1.40 7.27 -51.93 -0.38 1.02 16 31 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 32 H 0.10 1.42 8.03 -51.93 -0.42 1.00 16 33 H 0.09 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.21 5.71 -51.93 -0.30 0.91 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.37 3.27 9.08 45.56 0.41 3.68 16 43 H 0.07 1.29 7.97 -51.93 -0.41 0.88 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 346.84 15.07 5.23 5.23 Total: -1.00 -30.23 346.84 -8.59 -38.82 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.68 Total: 9.84 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -2.42 Total: -10.63 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.34 Total: -37.09 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.38 Total: -20.79 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.23 -8.59 -38.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352057247.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.886 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds