Wall clock time and date at job start Tue Mar 31 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99899 * 2 1 4 4 H 1.48501 * 109.47256 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47400 * 300.00366 * 3 2 1 6 6 H 1.48509 * 109.46926 * 59.99921 * 3 2 1 7 7 C 1.37881 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47528 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47528 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99589 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00355 * 179.97438 * 11 10 9 14 14 C 1.46923 * 120.63141 * 359.97438 * 13 11 10 15 15 C 1.53195 * 108.77776 * 126.40957 * 14 13 11 16 16 C 1.53046 * 109.30793 * 54.63922 * 15 14 13 17 17 O 1.42897 * 109.45752 * 178.61487 * 16 15 14 18 18 C 1.42899 * 113.99988 * 210.00011 * 17 16 15 19 19 C 1.53005 * 109.47388 * 179.97438 * 18 17 16 20 20 C 1.52996 * 117.50036 * 243.62090 * 19 18 17 21 21 C 1.52996 * 117.50073 * 174.99640 * 19 18 17 22 22 C 1.53031 * 109.53726 * 298.63346 * 16 15 14 23 23 C 1.46927 * 120.63304 * 180.02562 * 13 11 10 24 24 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47078 * 59.99695 * 9 7 2 26 26 H 1.09000 * 109.47182 * 300.00388 * 9 7 2 27 27 H 1.09001 * 109.47137 * 59.99797 * 10 9 7 28 28 H 1.09004 * 109.46895 * 300.00081 * 10 9 7 29 29 H 1.09009 * 109.58590 * 6.62804 * 14 13 11 30 30 H 1.08995 * 109.59117 * 246.20038 * 14 13 11 31 31 H 1.08990 * 109.49959 * 294.69006 * 15 14 13 32 32 H 1.08999 * 109.49609 * 174.58715 * 15 14 13 33 33 H 1.08995 * 109.46071 * 58.65633 * 16 15 14 34 34 H 1.09002 * 109.47142 * 299.99775 * 18 17 16 35 35 H 1.08999 * 109.47434 * 59.99920 * 18 17 16 36 36 H 1.09001 * 115.54635 * 29.33136 * 19 18 17 37 37 H 1.08999 * 117.49643 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.49585 * 145.01732 * 20 19 18 39 39 H 1.08996 * 117.50368 * 214.97903 * 21 19 18 40 40 H 1.09002 * 117.50138 * 0.02562 * 21 19 18 41 41 H 1.09004 * 109.49984 * 181.32240 * 22 16 15 42 42 H 1.08998 * 109.50266 * 301.38136 * 22 16 15 43 43 H 1.08993 * 109.58956 * 113.79989 * 23 13 11 44 44 H 1.08999 * 109.70338 * 353.44355 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4921 -4.9671 -0.0033 12 8 0.2792 -4.9671 -0.0033 13 7 2.1660 -6.1343 -0.0047 14 6 3.6351 -6.1504 -0.0064 15 6 4.1200 -7.0174 1.1598 16 6 3.4761 -8.4024 1.0627 17 8 3.9512 -9.2242 2.1308 18 6 4.0008 -10.6169 1.8149 19 6 4.5218 -11.3961 3.0242 20 6 5.8505 -12.1382 2.8674 21 6 4.5384 -12.9229 2.9271 22 6 1.9549 -8.2676 1.1609 23 6 1.4455 -7.4147 -0.0058 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.8721 -3.6050 0.8873 28 1 2.8721 -3.6034 -0.8927 29 1 4.0118 -5.1344 0.1124 30 1 3.9949 -6.5682 -0.9466 31 1 3.8370 -6.5500 2.1029 32 1 5.2045 -7.1163 1.1132 33 1 3.7394 -8.8591 0.1087 34 1 3.0007 -10.9674 1.5598 35 1 4.6679 -10.7737 0.9673 36 1 4.3024 -10.9560 3.9970 37 1 6.3537 -12.0710 1.9029 38 1 6.5057 -12.1863 3.7372 39 1 4.3305 -13.4874 3.8360 40 1 4.1786 -13.3724 2.0015 41 1 1.4983 -9.2564 1.1153 42 1 1.6922 -7.7889 2.1043 43 1 1.6271 -7.9354 -0.9460 44 1 0.3768 -7.2352 0.1119 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360333955.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:52 Heat of formation + Delta-G solvation = -74.202753 kcal Electronic energy + Delta-G solvation = -21847.733523 eV Core-core repulsion = 18572.274552 eV Total energy + Delta-G solvation = -3275.458971 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04165 -38.77973 -37.42584 -35.91588 -33.51706 -32.06421 -31.41319 -30.49792 -27.48833 -25.97546 -24.27758 -23.36353 -22.78614 -21.74764 -21.11242 -20.38072 -18.53311 -17.38145 -16.92804 -16.11444 -15.89275 -15.40504 -15.39292 -15.11424 -14.77415 -14.41179 -14.07851 -13.84071 -13.53590 -13.17322 -12.91045 -12.46043 -12.18486 -12.06044 -11.98202 -11.95669 -11.52969 -11.35143 -11.16412 -11.09880 -10.93887 -10.90632 -10.67940 -10.55710 -10.46822 -9.95172 -9.68501 -9.54452 -9.15452 -8.97020 -8.46807 -8.30555 -5.94967 -3.99265 3.08887 3.22700 3.29589 3.33403 3.40633 3.43908 3.51980 4.37939 4.47714 4.48261 4.54595 4.62758 4.66490 4.88896 4.93811 4.94490 5.11845 5.18460 5.20029 5.22119 5.30109 5.40016 5.41423 5.46737 5.48427 5.55670 5.68704 5.71063 5.73259 5.82325 5.97739 5.99220 6.13215 6.22061 6.22994 6.72667 6.91406 7.02006 7.74072 7.76194 7.87652 8.08490 8.39672 8.74687 9.09413 9.64227 11.16043 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037668 B = 0.002686 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.152639 B =10422.109987 C =10883.020381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.514 3.486 12 O -0.534 6.534 13 N -0.627 5.627 14 C 0.112 3.888 15 C -0.132 4.132 16 C 0.093 3.907 17 O -0.378 6.378 18 C 0.093 3.907 19 C -0.153 4.153 20 C -0.178 4.178 21 C -0.176 4.176 22 C -0.155 4.155 23 C 0.113 3.887 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 -24.788 2.557 27.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.304 3.696 12 O -0.409 6.409 13 N -0.364 5.364 14 C -0.011 4.011 15 C -0.170 4.170 16 C 0.036 3.964 17 O -0.298 6.298 18 C 0.016 3.984 19 C -0.171 4.171 20 C -0.215 4.215 21 C -0.213 4.213 22 C -0.193 4.193 23 C -0.010 4.010 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.809 -24.570 2.727 26.981 hybrid contribution 0.439 0.658 -0.185 0.812 sum 11.248 -23.912 2.543 26.548 Atomic orbital electron populations 1.70008 1.06056 1.26453 1.50307 1.25034 0.94830 0.99248 0.95345 0.86538 0.80004 0.83852 0.77572 1.19742 1.21035 1.21026 1.21254 0.92948 0.90983 1.51211 0.92548 1.18913 0.93198 0.89407 0.98616 1.21886 1.00745 0.91932 1.02294 1.21599 0.88418 0.85468 0.74103 1.90657 1.14427 1.87144 1.48644 1.48335 1.06403 1.05914 1.75701 1.21673 0.80167 1.01795 0.97481 1.22013 1.00804 0.93828 1.00363 1.22081 0.93203 0.91367 0.89774 1.87926 1.86365 1.16484 1.38990 1.22016 0.99368 0.81667 0.95308 1.22155 1.01434 0.93186 1.00319 1.23069 0.90829 1.04182 1.03391 1.22975 1.01601 0.93146 1.03536 1.22437 0.95900 1.00488 1.00494 1.21426 0.98791 0.83858 0.96891 0.93015 0.95844 0.95828 0.90206 0.90243 0.88280 0.91587 0.90324 0.90096 0.92178 0.92973 0.93303 0.86816 0.88688 0.88603 0.88399 0.88687 0.91018 0.90502 0.92133 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.65 3.98 -27.89 -0.11 -2.76 16 11 C 0.51 10.18 7.70 -10.99 -0.08 10.10 16 12 O -0.53 -12.83 15.40 5.55 0.09 -12.74 16 13 N -0.63 -9.34 2.97 -172.74 -0.51 -9.86 16 14 C 0.11 1.27 6.34 -3.71 -0.02 1.24 16 15 C -0.13 -1.36 5.73 -26.61 -0.15 -1.51 16 16 C 0.09 0.94 2.57 -26.69 -0.07 0.87 16 17 O -0.38 -4.09 9.99 -35.23 -0.35 -4.44 16 18 C 0.09 0.78 6.03 37.16 0.22 1.00 16 19 C -0.15 -1.19 6.06 -90.62 -0.55 -1.73 16 20 C -0.18 -1.15 10.18 -26.73 -0.27 -1.43 16 21 C -0.18 -1.06 10.25 -26.73 -0.27 -1.34 16 22 C -0.15 -1.70 5.70 -26.59 -0.15 -1.85 16 23 C 0.11 1.46 6.43 -3.68 -0.02 1.44 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.08 1.50 7.69 -51.93 -0.40 1.10 16 28 H 0.08 1.48 7.94 -51.93 -0.41 1.07 16 29 H 0.10 1.12 5.93 -51.92 -0.31 0.81 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.53 7.78 -51.93 -0.40 0.12 16 34 H 0.05 0.40 7.84 -51.93 -0.41 0.00 16 35 H 0.05 0.36 7.82 -51.93 -0.41 -0.04 16 36 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.42 7.01 -51.93 -0.36 1.05 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -34.09 355.72 -9.43 -43.52 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -7.71 Total: -2.87 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -2.02 Total: -8.82 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.22 Total: -36.73 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.27 Total: -17.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.09 -9.43 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360333955.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.685 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds