Wall clock time and date at job start Tue Mar 31 2020 06:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99995 * 2 1 4 4 H 1.48504 * 109.47139 * 269.99690 * 3 2 1 5 5 H 1.48498 * 109.47068 * 29.99767 * 3 2 1 6 6 H 1.48503 * 109.46814 * 149.99923 * 3 2 1 7 7 C 1.37879 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99952 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99942 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47352 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47352 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00014 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99655 * 180.02562 * 11 10 9 14 14 C 1.47016 * 125.65029 * 359.97378 * 13 11 10 15 15 C 1.54329 * 107.27306 * 181.10458 * 14 13 11 16 16 C 1.55164 * 102.94109 * 22.19375 * 15 14 13 17 17 H 1.09004 * 111.00254 * 82.60728 * 16 15 14 18 18 C 1.52996 * 111.00696 * 206.42580 * 16 15 14 19 19 C 1.53177 * 109.54399 * 178.54713 * 18 16 15 20 20 C 1.53098 * 109.21356 * 176.87607 * 19 18 16 21 21 O 1.42899 * 109.41440 * 302.35638 * 20 19 18 22 22 C 1.42904 * 114.09711 * 61.16120 * 21 20 19 23 23 C 1.53100 * 109.41581 * 298.84173 * 22 21 20 24 24 C 1.47433 * 125.64404 * 180.02562 * 13 11 10 25 25 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47363 * 59.99745 * 9 7 2 27 27 H 1.09003 * 109.47362 * 299.99982 * 9 7 2 28 28 H 1.08999 * 109.46741 * 59.99631 * 10 9 7 29 29 H 1.09003 * 109.46761 * 300.00214 * 10 9 7 30 30 H 1.09003 * 109.88237 * 61.69128 * 14 13 11 31 31 H 1.08996 * 109.88544 * 300.51994 * 14 13 11 32 32 H 1.08999 * 110.72088 * 263.83372 * 15 14 13 33 33 H 1.08997 * 110.87219 * 140.62426 * 15 14 13 34 34 H 1.09002 * 109.61782 * 58.31938 * 18 16 15 35 35 H 1.09002 * 109.52487 * 56.93818 * 19 18 16 36 36 H 1.09004 * 109.52023 * 296.81438 * 19 18 16 37 37 H 1.08999 * 109.47859 * 62.34349 * 20 19 18 38 38 H 1.08997 * 109.47984 * 182.36161 * 20 19 18 39 39 H 1.09002 * 109.48461 * 58.81736 * 22 21 20 40 40 H 1.08999 * 109.48109 * 178.84665 * 22 21 20 41 41 H 1.08992 * 109.52355 * 177.51674 * 23 22 21 42 42 H 1.08999 * 109.51737 * 297.64019 * 23 22 21 43 43 H 1.08994 * 110.36484 * 36.98399 * 24 13 11 44 44 H 1.08996 * 110.36456 * 274.66100 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0022 12 8 6.1349 -1.5862 0.0026 13 7 6.2023 -3.8038 0.0018 14 6 5.5961 -5.1432 0.0008 15 6 6.7494 -6.1682 0.0290 16 6 7.9289 -5.3482 0.6155 17 1 7.8783 -5.3146 1.7039 18 6 9.2732 -5.9101 0.1489 19 6 10.4107 -5.0557 0.7168 20 6 11.7531 -5.6694 0.3102 21 8 11.8222 -7.0163 0.7826 22 6 10.8123 -7.8746 0.2482 23 6 9.4321 -7.3495 0.6522 24 6 7.6695 -3.9489 0.0034 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6804 -0.8888 28 1 3.6585 -3.1502 -0.8892 29 1 3.6578 -3.1506 0.8907 30 1 5.0007 -5.2799 -0.9020 31 1 4.9686 -5.2668 0.8834 32 1 6.9831 -6.5137 -0.9780 33 1 6.5051 -7.0099 0.6771 34 1 9.3167 -5.8981 -0.9402 35 1 10.3374 -5.0276 1.8040 36 1 10.3382 -4.0429 0.3205 37 1 11.8429 -5.6600 -0.7761 38 1 12.5654 -5.0886 0.7470 39 1 10.8897 -7.8941 -0.8389 40 1 10.9471 -8.8826 0.6404 41 1 8.6594 -7.9776 0.2089 42 1 9.3387 -7.3689 1.7380 43 1 8.1265 -3.1746 0.6195 44 1 8.0563 -3.9025 -1.0145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360392473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:33 Heat of formation + Delta-G solvation = -105.903714 kcal Electronic energy + Delta-G solvation = -22217.179971 eV Core-core repulsion = 18940.346343 eV Total energy + Delta-G solvation = -3276.833628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -40.37106 -39.31133 -37.46600 -34.54168 -33.48665 -31.57966 -31.44658 -30.66306 -29.05312 -26.47695 -24.81371 -24.07268 -22.80684 -21.17714 -20.72225 -20.31236 -18.72898 -17.24586 -16.86654 -16.34242 -16.20247 -15.80934 -15.30358 -15.09684 -14.49702 -14.31042 -14.18977 -14.00386 -13.54201 -13.12526 -13.03637 -12.74063 -12.57165 -12.39449 -12.14064 -11.80858 -11.72590 -11.63282 -11.43950 -11.34448 -10.97838 -10.87832 -10.59574 -10.58464 -10.14795 -10.03377 -9.85080 -9.76894 -9.23823 -9.16001 -8.51505 -8.46358 -6.02698 -4.01332 3.10156 3.20296 3.38323 3.44777 3.52649 3.56144 4.06542 4.24324 4.34476 4.51460 4.58958 4.60905 4.69625 4.85959 4.88323 4.96451 5.08363 5.18816 5.25523 5.29652 5.32313 5.32808 5.36998 5.46058 5.50417 5.55169 5.65436 5.69076 5.73324 5.76506 5.84657 5.90064 6.07132 6.10237 6.12744 6.46344 6.69772 6.83183 7.36995 7.44082 7.73065 7.81649 8.49627 8.62796 9.00238 9.60446 11.10127 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042838 B = 0.002947 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.466531 B = 9498.569558 C =10047.008077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.116 4.116 11 C 0.526 3.474 12 O -0.540 6.540 13 N -0.630 5.630 14 C 0.102 3.898 15 C -0.126 4.126 16 C -0.096 4.096 17 H 0.086 0.914 18 C -0.077 4.077 19 C -0.154 4.154 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.060 3.940 23 C -0.150 4.150 24 C 0.111 3.889 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.625 -18.325 0.087 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.156 4.156 11 C 0.317 3.683 12 O -0.416 6.416 13 N -0.366 5.366 14 C -0.022 4.022 15 C -0.164 4.164 16 C -0.115 4.115 17 H 0.104 0.896 18 C -0.096 4.096 19 C -0.192 4.192 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.188 4.188 24 C -0.012 4.012 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.866 -17.598 0.215 28.068 hybrid contribution 0.011 0.917 -0.242 0.948 sum 21.877 -16.681 -0.027 27.511 Atomic orbital electron populations 1.69913 1.06283 1.26961 1.51108 1.24971 0.94714 0.99228 0.94330 0.86796 0.80632 0.83379 0.78758 1.20231 1.21423 1.18531 1.21103 0.89240 0.94560 1.51307 0.90946 1.19383 0.96431 0.90211 0.97647 1.21647 0.87656 1.03143 1.03162 1.21294 0.91314 0.81362 0.74359 1.90654 1.70819 1.30645 1.49506 1.48682 1.06472 1.06032 1.75454 1.21990 0.96060 0.81865 1.02261 1.22703 0.94298 0.97523 1.01849 1.22416 0.93809 0.94498 1.00746 0.89606 1.21161 0.93500 0.94569 1.00322 1.22291 0.94774 0.99864 1.02288 1.22588 0.97514 0.82963 0.98546 1.87933 1.52261 1.20263 1.69944 1.22586 0.87239 0.93980 0.97876 1.22266 0.97826 0.96291 1.02393 1.22168 0.82044 0.96583 1.00423 0.92721 0.95834 0.96299 0.89737 0.89714 0.91192 0.91178 0.90585 0.90016 0.90689 0.90791 0.90461 0.93208 0.88867 0.93265 0.88949 0.90556 0.90864 0.90716 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.35 4.83 -27.88 -0.13 -2.48 16 11 C 0.53 10.15 7.85 -10.99 -0.09 10.07 16 12 O -0.54 -12.51 16.24 5.56 0.09 -12.42 16 13 N -0.63 -9.17 3.33 -170.52 -0.57 -9.73 16 14 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 15 C -0.13 -0.96 5.45 -24.89 -0.14 -1.10 16 16 C -0.10 -0.80 2.57 -88.46 -0.23 -1.03 16 17 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.08 -0.53 1.79 -90.37 -0.16 -0.70 16 19 C -0.15 -1.13 5.22 -26.59 -0.14 -1.27 16 20 C 0.06 0.44 6.84 37.21 0.25 0.69 16 21 O -0.39 -3.42 10.77 -35.23 -0.38 -3.80 16 22 C 0.06 0.39 6.84 37.21 0.25 0.64 16 23 C -0.15 -0.92 5.17 -26.52 -0.14 -1.06 16 24 C 0.11 1.32 5.61 -2.52 -0.01 1.30 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.52 8.04 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.57 7.62 -51.93 -0.40 0.17 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.38 7.49 -51.93 -0.39 -0.01 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 44 H 0.06 0.71 8.01 -51.93 -0.42 0.30 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -34.70 345.61 -8.49 -43.19 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -7.88 Total: -5.71 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.07 Total: -7.47 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.21 Total: -37.16 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.29 Total: -16.22 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.70 -8.49 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360392473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.714 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds