Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00401 * 2 1 4 4 H 1.48501 * 109.47301 * 270.00296 * 3 2 1 5 5 H 1.48505 * 109.47047 * 30.00438 * 3 2 1 6 6 H 1.48498 * 109.47176 * 150.00043 * 3 2 1 7 7 C 1.37884 * 119.99538 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99680 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47054 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00306 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.47207 * 120.81118 * 0.14238 * 13 11 10 15 15 C 1.53195 * 108.85456 * 126.33789 * 14 13 11 16 16 C 1.53038 * 109.31078 * 54.64814 * 15 14 13 17 17 C 1.53035 * 109.54175 * 298.63655 * 16 15 14 18 18 H 1.09003 * 109.49576 * 301.41349 * 17 16 15 19 19 O 1.42908 * 109.52585 * 181.33383 * 17 16 15 20 20 C 1.42898 * 113.99790 * 150.14455 * 19 17 16 21 21 C 1.52997 * 109.46734 * 179.97438 * 20 19 17 22 22 C 1.53001 * 117.50212 * 243.62445 * 21 20 19 23 23 C 1.52999 * 59.99964 * 252.51102 * 22 21 20 24 24 C 1.46926 * 120.63336 * 180.02562 * 13 11 10 25 25 H 0.97001 * 119.99787 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47543 * 59.99680 * 9 7 2 27 27 H 1.09001 * 109.47614 * 299.99423 * 9 7 2 28 28 H 1.08992 * 109.47110 * 59.99771 * 10 9 7 29 29 H 1.09000 * 109.46956 * 299.99376 * 10 9 7 30 30 H 1.08996 * 109.53610 * 6.53286 * 14 13 11 31 31 H 1.09002 * 109.68003 * 246.22753 * 14 13 11 32 32 H 1.09002 * 109.49713 * 294.70061 * 15 14 13 33 33 H 1.08996 * 109.49824 * 174.60179 * 15 14 13 34 34 H 1.09003 * 109.46001 * 178.60988 * 16 15 14 35 35 H 1.09005 * 109.44940 * 58.65266 * 16 15 14 36 36 H 1.08998 * 109.47551 * 299.99726 * 20 19 17 37 37 H 1.09006 * 109.47144 * 60.00341 * 20 19 17 38 38 H 1.09000 * 115.55158 * 29.32898 * 21 20 19 39 39 H 1.09002 * 117.49765 * 359.97438 * 22 21 20 40 40 H 1.08992 * 117.50498 * 145.02021 * 22 21 20 41 41 H 1.09001 * 117.49912 * 252.50813 * 23 22 21 42 42 H 1.09003 * 117.52449 * 107.48074 * 23 22 21 43 43 H 1.09002 * 109.58861 * 113.82042 * 24 13 11 44 44 H 1.08996 * 109.58519 * 353.53933 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4644 -2.1295 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6368 -0.0010 11 6 5.5283 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0036 13 7 6.2022 -3.8040 -0.0028 14 6 5.4842 -5.0892 -0.0055 15 6 5.9943 -5.9388 -1.1738 16 6 7.5160 -6.0705 -1.0772 17 6 8.1569 -4.6841 -1.1723 18 1 7.8720 -4.2155 -2.1143 19 8 9.5791 -4.8103 -1.1133 20 6 10.2830 -3.7924 -1.8278 21 6 11.7894 -4.0258 -1.6959 22 6 12.6093 -2.9560 -0.9719 23 6 12.7189 -3.1063 -2.4905 24 6 7.6714 -3.8203 -0.0035 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6803 -0.8912 28 1 3.6576 -3.1508 -0.8906 29 1 3.6584 -3.1503 0.8893 30 1 4.4157 -4.9095 -0.1236 31 1 5.6651 -5.6126 0.9333 32 1 5.7298 -5.4583 -2.1157 33 1 5.5399 -6.9285 -1.1294 34 1 7.8789 -6.6952 -1.8935 35 1 7.7809 -6.5285 -0.1242 36 1 10.0007 -3.8255 -2.8800 37 1 10.0293 -2.8164 -1.4139 38 1 12.0951 -5.0646 -1.5713 39 1 12.0756 -2.0858 -0.5898 40 1 13.4545 -3.2908 -0.3707 41 1 13.6363 -3.5400 -2.8884 42 1 12.2573 -2.3354 -3.1076 43 1 8.0326 -4.2394 0.9357 44 1 8.0479 -2.8040 -0.1189 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360645217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = -71.862279 kcal Electronic energy + Delta-G solvation = -22170.856544 eV Core-core repulsion = 18895.499063 eV Total energy + Delta-G solvation = -3275.357481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14646 -38.70855 -37.41980 -36.06796 -33.55285 -32.53892 -31.47582 -30.30930 -27.32819 -26.42928 -24.89782 -23.00765 -22.67756 -21.64127 -20.97662 -20.29486 -18.66481 -17.43043 -16.99424 -16.34013 -16.07737 -15.70126 -15.18218 -15.15601 -14.77616 -14.20206 -14.12720 -13.95660 -13.40624 -13.25209 -13.06948 -12.76499 -12.57165 -12.28866 -11.97388 -11.83957 -11.47026 -11.34638 -11.23517 -11.09913 -10.97738 -10.84617 -10.69855 -10.49222 -10.13945 -10.03777 -9.80434 -9.75955 -9.24990 -9.15703 -8.53192 -8.48069 -6.03757 -4.02427 2.93390 3.06860 3.32507 3.37298 3.43954 3.55076 3.60814 4.42755 4.50421 4.55408 4.58095 4.64434 4.68110 4.79570 4.93420 5.01341 5.03649 5.14671 5.22990 5.30613 5.31807 5.32655 5.37873 5.46719 5.56097 5.64848 5.66680 5.71456 5.77832 5.79385 5.86411 5.94913 6.03476 6.05097 6.07780 6.53503 6.68407 7.03140 7.35336 7.42471 7.59930 7.78522 8.47846 8.59327 8.99080 9.59415 11.09054 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.003513 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.974851 B = 7967.560858 C = 9080.436523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.540 6.540 13 N -0.621 5.621 14 C 0.104 3.896 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.079 3.921 18 H 0.064 0.936 19 O -0.377 6.377 20 C 0.090 3.910 21 C -0.152 4.152 22 C -0.177 4.177 23 C -0.175 4.175 24 C 0.091 3.909 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.421 -13.712 -3.585 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.304 3.696 12 O -0.416 6.416 13 N -0.358 5.358 14 C -0.019 4.019 15 C -0.171 4.171 16 C -0.152 4.152 17 C 0.020 3.980 18 H 0.082 0.918 19 O -0.295 6.295 20 C 0.014 3.986 21 C -0.170 4.170 22 C -0.214 4.214 23 C -0.212 4.212 24 C -0.032 4.032 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.684 -13.151 -3.481 25.598 hybrid contribution 0.280 0.999 -0.160 1.050 sum 21.964 -12.152 -3.641 25.364 Atomic orbital electron populations 1.69909 1.06284 1.26973 1.51054 1.24969 0.94707 0.99222 0.94328 0.86800 0.80638 0.83416 0.78737 1.20253 1.21418 1.18547 1.21103 0.89228 0.94559 1.51355 0.90916 1.19382 0.96441 0.90196 0.97638 1.21690 0.87862 1.03242 1.03182 1.21597 0.91653 0.82241 0.74093 1.90639 1.70705 1.31056 1.49247 1.48273 1.05594 1.06541 1.75355 1.21832 0.97856 0.83810 0.98355 1.21926 0.94910 1.00810 0.99502 1.21573 0.94780 0.95512 1.03300 1.22447 0.80518 0.96822 0.98225 0.91788 1.87872 1.17309 1.50180 1.74140 1.22086 0.89926 0.91116 0.95491 1.22124 0.91649 0.97486 1.05783 1.23087 1.02783 1.00914 0.94653 1.22979 1.01151 1.02461 0.94634 1.21918 0.81034 1.01794 0.98493 0.92712 0.95837 0.96333 0.89595 0.89527 0.88565 0.91289 0.91106 0.89843 0.91082 0.90877 0.92856 0.92847 0.86902 0.88501 0.88605 0.88425 0.88600 0.91181 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.65 27.47 -169.99 -4.67 17.98 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.34 3.99 -27.88 -0.11 -2.45 16 11 C 0.51 9.64 7.70 -10.99 -0.08 9.55 16 12 O -0.54 -12.19 15.39 5.55 0.09 -12.11 16 13 N -0.62 -8.93 2.98 -172.52 -0.51 -9.44 16 14 C 0.10 1.12 6.35 -3.56 -0.02 1.10 16 15 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 16 C -0.11 -1.05 5.54 -26.69 -0.15 -1.20 16 17 C 0.08 0.88 2.76 -26.59 -0.07 0.81 16 18 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 19 O -0.38 -4.31 9.99 -35.23 -0.35 -4.66 16 20 C 0.09 0.91 6.03 37.16 0.22 1.14 16 21 C -0.15 -1.33 6.06 -90.62 -0.55 -1.88 16 22 C -0.18 -1.42 10.18 -26.73 -0.27 -1.69 16 23 C -0.18 -1.28 10.25 -26.73 -0.27 -1.56 16 24 C 0.09 1.21 6.04 -3.69 -0.02 1.19 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 26 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 27 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 28 H 0.09 1.53 7.69 -51.93 -0.40 1.13 16 29 H 0.09 1.56 7.96 -51.93 -0.41 1.15 16 30 H 0.10 1.03 5.97 -51.93 -0.31 0.72 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.05 0.57 7.75 -51.93 -0.40 0.17 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 1.37 6.88 -51.93 -0.36 1.01 16 LS Contribution 352.55 15.07 5.31 5.31 Total: -1.00 -33.59 352.55 -9.08 -42.68 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -7.70 Total: -2.79 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.02 Total: -9.76 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.26 Total: -36.65 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.27 Total: -16.77 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.59 -9.08 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360645217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.187 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds