Wall clock time and date at job start Tue Mar 31 2020 07:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 110.53967 * 2 1 4 4 N 1.46494 * 109.47483 * 57.38688 * 3 2 1 5 5 C 1.34770 * 120.00474 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00276 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.47285 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47150 * 179.97438 * 8 7 5 10 10 H 1.07994 * 119.99929 * 359.97438 * 9 8 7 11 11 C 1.37877 * 119.99928 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00017 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99866 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47017 * 90.00303 * 13 11 9 15 15 H 1.48503 * 109.47289 * 210.00199 * 13 11 9 16 16 H 1.48502 * 109.47307 * 330.00250 * 13 11 9 17 17 C 1.54813 * 110.48734 * 122.61538 * 2 1 3 18 18 C 1.54999 * 102.09107 * 139.55708 * 17 2 1 19 19 O 1.44577 * 103.58721 * 323.05576 * 18 17 2 20 20 C 1.43746 * 106.86791 * 39.87971 * 19 18 17 21 21 H 1.08997 * 109.87710 * 93.17240 * 20 19 18 22 22 C 1.53006 * 109.87739 * 214.17096 * 20 19 18 23 23 C 1.52995 * 117.49716 * 8.98675 * 22 20 19 24 24 C 1.52997 * 117.50038 * 300.32641 * 22 20 19 25 25 H 1.08997 * 109.46897 * 176.15560 * 1 2 3 26 26 H 1.08999 * 109.46817 * 296.15073 * 1 2 3 27 27 H 1.08996 * 109.47098 * 56.15103 * 1 2 3 28 28 H 1.09004 * 109.46797 * 177.38369 * 3 2 1 29 29 H 1.08997 * 109.47201 * 297.38139 * 3 2 1 30 30 H 0.97005 * 119.99992 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47011 * 299.99491 * 7 5 4 32 32 H 1.08997 * 109.47380 * 59.99501 * 7 5 4 33 33 H 1.08999 * 109.47163 * 299.99493 * 8 7 5 34 34 H 1.09004 * 109.46837 * 59.99702 * 8 7 5 35 35 H 0.96998 * 119.99960 * 180.02562 * 12 11 9 36 36 H 1.08998 * 110.90653 * 257.75453 * 17 2 1 37 37 H 1.08997 * 110.90931 * 21.32597 * 17 2 1 38 38 H 1.09002 * 110.62127 * 81.47937 * 18 17 2 39 39 H 1.08995 * 110.61974 * 204.31611 * 18 17 2 40 40 H 1.08998 * 115.54457 * 154.65514 * 22 20 19 41 41 H 1.09000 * 117.49969 * 359.97438 * 23 22 20 42 42 H 1.09002 * 117.49897 * 145.02457 * 23 22 20 43 43 H 1.09000 * 117.49468 * 214.98227 * 24 22 20 44 44 H 1.09002 * 117.49810 * 359.97339 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 1.5411 2.1513 1.1634 5 6 1.8813 3.4388 1.3705 6 8 2.6230 4.0025 0.5941 7 6 1.3400 4.1781 2.5670 8 6 1.8769 5.6107 2.5671 9 6 1.3351 6.3502 3.7632 10 1 0.6736 5.8486 4.4540 11 6 1.6839 7.6671 3.9757 12 7 2.4890 8.2781 3.1341 13 14 1.0129 8.5834 5.4587 14 1 1.9389 8.4121 6.6070 15 1 0.8888 10.0272 5.1340 16 1 -0.3224 8.0395 5.8142 17 6 2.0718 -0.7817 1.2215 18 6 3.2660 -1.5561 0.6077 19 8 2.7977 -1.9109 -0.7133 20 6 2.0694 -0.7781 -1.2159 21 1 2.7330 -0.1401 -1.7995 22 6 0.9052 -1.2532 -2.0877 23 6 0.5955 -2.7514 -2.0974 24 6 1.2429 -2.0955 -3.3195 25 1 -0.3633 -1.0253 -0.0689 26 1 -0.3633 0.4529 0.9225 27 1 -0.3633 0.5724 -0.8535 28 1 3.1557 1.4127 0.0469 29 1 1.7517 1.9388 -0.9125 30 1 0.9475 1.7005 1.7843 31 1 0.2511 4.1978 2.5199 32 1 1.6550 3.6723 3.4797 33 1 2.9657 5.5907 2.6145 34 1 1.5621 6.1167 1.6544 35 1 2.7347 9.2044 3.2838 36 1 2.4103 -0.0992 2.0011 37 1 1.3195 -1.4689 1.6085 38 1 4.1457 -0.9158 0.5418 39 1 3.4858 -2.4491 1.1928 40 1 0.0637 -0.5647 -2.1640 41 1 1.2214 -3.3987 -1.4830 42 1 -0.4498 -3.0488 -2.1806 43 1 0.6232 -1.9613 -4.2061 44 1 2.2945 -2.3108 -3.5091 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360648972.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:03 Heat of formation + Delta-G solvation = -72.980909 kcal Electronic energy + Delta-G solvation = -22331.224343 eV Core-core repulsion = 19055.818355 eV Total energy + Delta-G solvation = -3275.405988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81219 -38.97217 -36.69012 -35.60879 -33.45015 -32.69580 -30.92579 -30.03693 -27.35377 -26.57102 -24.99694 -23.50415 -22.52818 -21.76408 -20.63349 -19.74484 -19.21564 -17.09726 -16.60514 -16.22538 -16.02584 -15.41457 -15.24431 -15.17004 -14.88218 -14.41022 -14.21938 -13.80721 -13.51315 -13.00088 -12.96730 -12.44141 -12.31525 -12.17650 -11.86059 -11.71699 -11.58221 -11.26151 -11.16011 -10.95229 -10.93736 -10.89101 -10.60497 -10.43781 -10.32927 -9.96074 -9.80646 -9.66840 -9.18335 -9.01259 -8.79083 -8.32228 -5.96344 -4.00808 3.25758 3.32877 3.38238 3.40557 3.43486 3.52694 3.65700 4.13500 4.33613 4.43763 4.47836 4.64745 4.74829 4.75161 4.91240 4.95139 5.01982 5.23729 5.37120 5.38551 5.45461 5.45935 5.48705 5.50992 5.61592 5.65617 5.68602 5.73969 5.82202 5.90792 5.91290 6.00128 6.04100 6.22139 6.23752 6.63084 6.70151 6.89094 7.74101 7.86192 7.87418 8.07107 8.38498 8.78007 9.07935 9.62726 11.14622 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039673 B = 0.002841 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.601405 B = 9854.215291 C = 9912.184979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C 0.133 3.867 4 N -0.742 5.742 5 C 0.509 3.491 6 O -0.534 6.534 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.148 4.148 18 C 0.046 3.954 19 O -0.370 6.370 20 C 0.118 3.882 21 H 0.076 0.924 22 C -0.161 4.161 23 C -0.166 4.166 24 C -0.178 4.178 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.396 0.604 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -23.925 -7.687 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C 0.009 3.991 4 N -0.397 5.397 5 C 0.297 3.703 6 O -0.410 6.410 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.186 4.186 18 C -0.030 4.030 19 O -0.289 6.289 20 C 0.060 3.940 21 H 0.094 0.906 22 C -0.179 4.179 23 C -0.203 4.203 24 C -0.215 4.215 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.231 0.769 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.358 -23.516 -8.414 25.200 hybrid contribution -0.610 0.562 1.192 1.452 sum -3.967 -22.954 -7.222 24.388 Atomic orbital electron populations 1.21941 0.92859 1.02319 1.02204 1.22121 0.97433 0.94954 0.95327 1.21245 0.98460 0.89440 0.89948 1.46223 1.52306 1.13118 1.28063 1.21568 0.80248 0.80643 0.87842 1.90673 1.35830 1.67162 1.47296 1.21862 1.01222 1.00217 0.93674 1.18895 0.96921 0.86938 0.97302 1.21222 1.29239 0.96636 1.09448 0.92626 1.25030 0.95192 0.97693 0.96498 1.69999 1.34806 1.11798 1.36232 0.86591 0.79299 0.79079 0.82971 1.20675 1.21216 1.19895 1.23286 0.98362 0.99352 0.97611 1.23555 0.96285 0.99686 0.83474 1.88888 1.71583 1.37192 1.31262 1.22135 0.91792 0.86904 0.93209 0.90646 1.22635 1.00003 0.95209 1.00091 1.22867 1.01108 0.94875 1.01411 1.22961 1.01857 1.04547 0.92131 0.91512 0.92314 0.91854 0.91744 0.91470 0.76915 0.90290 0.90318 0.95850 0.95837 0.92944 0.89568 0.90071 0.91968 0.88937 0.86160 0.87849 0.89314 0.89022 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 6.86 37.16 0.26 -0.83 16 2 C -0.10 -0.88 0.68 -152.98 -0.10 -0.98 16 3 C 0.13 1.61 4.35 -4.05 -0.02 1.59 16 4 N -0.74 -9.95 4.82 -60.30 -0.29 -10.24 16 5 C 0.51 9.63 7.83 -10.99 -0.09 9.55 16 6 O -0.53 -12.59 15.98 5.56 0.09 -12.50 16 7 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 8 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 9 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 10 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 17 C -0.15 -1.21 6.02 -24.72 -0.15 -1.36 16 18 C 0.05 0.40 7.72 38.21 0.29 0.69 16 19 O -0.37 -3.77 9.59 -35.23 -0.34 -4.10 16 20 C 0.12 1.11 3.45 -26.15 -0.09 1.02 16 21 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 22 C -0.16 -1.36 4.21 -90.62 -0.38 -1.74 16 23 C -0.17 -1.33 9.83 -26.70 -0.26 -1.60 16 24 C -0.18 -1.45 10.20 -26.70 -0.27 -1.72 16 25 H 0.07 0.49 7.22 -51.93 -0.37 0.12 16 26 H 0.06 0.45 6.91 -51.93 -0.36 0.09 16 27 H 0.06 0.51 6.89 -51.93 -0.36 0.15 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.40 4.21 6.94 -40.82 -0.28 3.92 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 0.73 7.38 -51.93 -0.38 0.35 16 37 H 0.08 0.59 7.87 -51.93 -0.41 0.19 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 0.94 5.94 -51.93 -0.31 0.63 16 41 H 0.10 0.93 7.08 -51.93 -0.37 0.56 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -33.71 349.60 -8.49 -42.20 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.43 Total: 0.47 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.50 Total: -10.95 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.45 Total: -37.01 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.25 Total: -16.61 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.71 -8.49 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360648972.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.785 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds