Wall clock time and date at job start Tue Mar 31 2020 07:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 110.43455 * 2 1 4 4 N 1.46505 * 109.47208 * 57.42336 * 3 2 1 5 5 C 1.34772 * 120.00352 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00071 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00175 * 179.97438 * 5 4 3 8 8 C 1.52999 * 109.47032 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47032 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00304 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00228 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99885 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00225 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47352 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47549 * 119.99921 * 13 11 9 16 16 H 1.48502 * 109.47097 * 239.99588 * 13 11 9 17 17 C 1.54812 * 110.48917 * 122.54439 * 2 1 3 18 18 C 1.54997 * 102.08927 * 97.79738 * 17 2 1 19 19 O 1.44378 * 103.49212 * 37.02403 * 18 17 2 20 20 C 1.43744 * 106.97726 * 319.94161 * 19 18 17 21 21 H 1.09007 * 109.87588 * 267.08720 * 20 19 18 22 22 C 1.52997 * 109.88402 * 145.93897 * 20 19 18 23 23 C 1.52992 * 117.50143 * 134.26170 * 22 20 19 24 24 C 1.52997 * 117.50150 * 65.63378 * 22 20 19 25 25 H 1.08997 * 109.47559 * 298.90812 * 1 2 3 26 26 H 1.09003 * 109.47617 * 58.90942 * 1 2 3 27 27 H 1.09006 * 109.46993 * 178.90610 * 1 2 3 28 28 H 1.08996 * 109.47469 * 177.42096 * 3 2 1 29 29 H 1.08997 * 109.47295 * 297.42487 * 3 2 1 30 30 H 0.97007 * 119.99511 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47000 * 299.99787 * 7 5 4 32 32 H 1.08997 * 109.46924 * 59.99897 * 7 5 4 33 33 H 1.08996 * 109.47469 * 299.99801 * 8 7 5 34 34 H 1.08997 * 109.47295 * 60.00192 * 8 7 5 35 35 H 0.96996 * 119.99706 * 180.02562 * 12 11 9 36 36 H 1.08996 * 110.90645 * 339.60386 * 17 2 1 37 37 H 1.09001 * 110.90819 * 215.99687 * 17 2 1 38 38 H 1.09004 * 110.61754 * 278.52300 * 18 17 2 39 39 H 1.09004 * 110.75055 * 155.58560 * 18 17 2 40 40 H 1.09006 * 115.54562 * 279.97246 * 22 20 19 41 41 H 1.08999 * 117.50306 * 0.02562 * 23 22 20 42 42 H 1.09001 * 117.49877 * 145.01933 * 23 22 20 43 43 H 1.08998 * 117.50026 * 214.97988 * 24 22 20 44 44 H 1.09004 * 117.49498 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.5378 2.1510 1.1639 5 6 1.8757 3.4391 1.3712 6 8 2.6159 4.0044 0.5945 7 6 1.3337 4.1771 2.5682 8 6 1.8680 5.6107 2.5683 9 6 1.3255 6.3489 3.7649 10 1 0.6654 5.8460 4.4560 11 6 1.6711 7.6667 3.9769 12 7 2.4746 8.2794 3.1351 13 14 0.9993 8.5814 5.4606 14 1 0.1248 7.6747 6.2469 15 1 2.1267 9.0423 6.3102 16 1 0.2119 9.7548 5.0038 17 6 2.0719 -0.7801 1.2225 18 6 2.3781 -2.1708 0.6104 19 8 2.8754 -1.8564 -0.7081 20 6 2.0694 -0.7795 -1.2149 21 1 1.2391 -1.1800 -1.7967 22 6 2.9227 0.1429 -2.0879 23 6 2.3388 0.5830 -3.4318 24 6 3.4810 -0.4342 -3.3902 25 1 -0.3634 0.4968 0.8996 26 1 -0.3634 0.5307 -0.8800 27 1 -0.3633 -1.0275 -0.0196 28 1 3.1530 1.4158 0.0462 29 1 1.7475 1.9394 -0.9121 30 1 0.9454 1.6989 1.7850 31 1 0.2448 4.1947 2.5217 32 1 1.6503 3.6717 3.4805 33 1 2.9568 5.5928 2.6150 34 1 1.5517 6.1164 1.6560 35 1 2.7181 9.2064 3.2845 36 1 1.3140 -0.8567 2.0021 37 1 2.9797 -0.3165 1.6085 38 1 1.4698 -2.7699 0.5452 39 1 3.1384 -2.6905 1.1935 40 1 3.5421 0.8598 -1.5488 41 1 1.3466 0.2158 -3.6940 42 1 2.5738 1.5897 -3.7772 43 1 4.4674 -0.0966 -3.7082 44 1 3.2408 -1.4712 -3.6249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360648973.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:07 Heat of formation + Delta-G solvation = -73.580200 kcal Electronic energy + Delta-G solvation = -22459.849727 eV Core-core repulsion = 19184.417751 eV Total energy + Delta-G solvation = -3275.431976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77745 -38.89625 -36.84058 -35.57669 -33.43687 -32.64610 -30.92124 -29.95938 -27.59490 -26.49436 -24.85880 -23.37112 -22.44220 -21.58013 -21.15249 -19.70152 -19.21962 -17.04688 -16.53848 -16.34938 -15.80334 -15.48492 -15.21778 -15.08454 -14.73093 -14.40139 -14.15056 -13.87356 -13.53380 -13.00094 -12.91608 -12.44772 -12.33912 -12.17941 -11.83918 -11.73298 -11.69013 -11.32776 -11.14216 -10.97931 -10.92870 -10.79112 -10.57317 -10.46476 -10.19147 -9.95166 -9.91740 -9.65453 -9.15711 -8.98540 -8.73566 -8.31605 -5.95622 -3.99928 3.27970 3.30396 3.32670 3.39451 3.42608 3.53075 3.96446 4.15914 4.15973 4.46497 4.48610 4.64198 4.78177 4.82297 4.88204 4.98574 5.03344 5.13550 5.33886 5.39354 5.42671 5.47044 5.48221 5.49907 5.57208 5.67802 5.69011 5.76258 5.78177 5.90478 5.95785 5.99076 6.10648 6.23962 6.25448 6.64371 6.75337 6.90769 7.75461 7.87553 7.90979 8.08185 8.39625 8.81217 9.09101 9.63602 11.15372 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028954 B = 0.003187 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.821155 B = 8782.695899 C = 9341.911729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C 0.137 3.863 4 N -0.744 5.744 5 C 0.509 3.491 6 O -0.535 6.535 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.149 4.149 18 C 0.047 3.953 19 O -0.368 6.368 20 C 0.123 3.877 21 H 0.072 0.928 22 C -0.166 4.166 23 C -0.171 4.171 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.395 0.605 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 -22.979 -8.298 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C 0.013 3.987 4 N -0.398 5.398 5 C 0.297 3.703 6 O -0.410 6.410 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.187 4.187 18 C -0.030 4.030 19 O -0.287 6.287 20 C 0.065 3.935 21 H 0.089 0.911 22 C -0.184 4.184 23 C -0.208 4.208 24 C -0.205 4.205 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.229 0.771 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.113 0.887 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.768 -22.479 -9.022 24.380 hybrid contribution -0.792 0.413 1.233 1.522 sum -3.560 -22.066 -7.789 23.670 Atomic orbital electron populations 1.21875 0.92845 1.01966 1.02958 1.22139 0.96871 0.95728 0.95319 1.21414 0.98328 0.89291 0.89649 1.46280 1.52368 1.13075 1.28128 1.21541 0.80255 0.80675 0.87825 1.90669 1.35911 1.67134 1.47311 1.21859 1.01173 1.00242 0.93724 1.18898 0.96950 0.86948 0.97296 1.21263 1.29232 0.96552 1.09409 0.92585 1.25032 0.95193 0.97707 0.96506 1.70012 1.34923 1.11611 1.36272 0.86538 0.78765 0.79825 0.82842 1.19763 1.21022 1.21028 1.23309 1.02439 0.95584 0.97339 1.23524 0.99366 0.96264 0.83823 1.88916 1.56747 1.52049 1.30995 1.22254 0.91899 0.86216 0.93170 0.91052 1.22566 1.03841 1.02131 0.89891 1.22980 0.98361 1.00260 0.99249 1.22846 0.98334 0.98779 1.00570 0.91724 0.91769 0.92261 0.91445 0.91147 0.77129 0.90340 0.90350 0.95839 0.95836 0.93016 0.89832 0.89826 0.92292 0.88929 0.86333 0.88789 0.88205 0.88707 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.03 37.16 0.30 -0.79 16 2 C -0.10 -0.92 0.68 -152.98 -0.10 -1.02 16 3 C 0.14 1.70 3.13 -4.04 -0.01 1.69 16 4 N -0.74 -10.22 5.11 -60.29 -0.31 -10.53 16 5 C 0.51 9.76 7.83 -10.99 -0.09 9.68 16 6 O -0.53 -12.69 15.98 5.56 0.09 -12.60 16 7 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 8 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 9 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 C -0.15 -1.24 5.88 -24.72 -0.15 -1.39 16 18 C 0.05 0.38 7.72 38.21 0.29 0.67 16 19 O -0.37 -3.99 11.17 -35.23 -0.39 -4.38 16 20 C 0.12 1.19 3.26 -26.16 -0.09 1.10 16 21 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 22 C -0.17 -1.72 4.03 -90.63 -0.37 -2.08 16 23 C -0.17 -1.57 10.18 -26.73 -0.27 -1.84 16 24 C -0.17 -1.57 10.24 -26.73 -0.27 -1.84 16 25 H 0.06 0.48 6.82 -51.93 -0.35 0.13 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.94 6.69 -51.93 -0.35 0.60 16 29 H 0.07 0.95 7.45 -51.93 -0.39 0.57 16 30 H 0.39 4.28 7.01 -40.82 -0.29 3.99 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 0.56 7.86 -51.93 -0.41 0.16 16 37 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.12 1.40 5.77 -51.93 -0.30 1.10 16 41 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -34.15 352.44 -8.51 -42.66 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.49 Total: 1.13 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.44 Total: -11.47 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.43 Total: -37.34 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.30 Total: -16.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.15 -8.51 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360648973.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.921 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds