Wall clock time and date at job start Tue Mar 31 2020 07:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 110.43408 * 2 1 4 4 N 1.46507 * 109.47235 * 300.69979 * 3 2 1 5 5 C 1.34770 * 119.99912 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00222 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99761 * 179.97438 * 5 4 3 8 8 C 1.53005 * 109.47304 * 179.97438 * 7 5 4 9 9 C 1.50695 * 109.47088 * 180.02562 * 8 7 5 10 10 H 1.07995 * 120.00496 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99572 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00327 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99951 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47297 * 59.99744 * 13 11 9 15 15 H 1.48503 * 109.47261 * 299.99924 * 13 11 9 16 16 H 1.48500 * 109.47454 * 179.97438 * 13 11 9 17 17 C 1.54811 * 110.48923 * 237.45383 * 2 1 3 18 18 C 1.55226 * 101.98563 * 261.99857 * 17 2 1 19 19 O 1.44379 * 103.56311 * 323.11719 * 18 17 2 20 20 C 1.43738 * 106.97761 * 39.99216 * 19 18 17 21 21 H 1.09002 * 109.87898 * 92.91017 * 20 19 18 22 22 C 1.53005 * 109.88143 * 214.05846 * 20 19 18 23 23 C 1.52995 * 117.49727 * 6.57963 * 22 20 19 24 24 C 1.53001 * 117.49826 * 297.92051 * 22 20 19 25 25 H 1.09003 * 109.46518 * 59.30416 * 1 2 3 26 26 H 1.08997 * 109.46577 * 179.29972 * 1 2 3 27 27 H 1.08993 * 109.47126 * 299.30384 * 1 2 3 28 28 H 1.09002 * 109.47497 * 180.70048 * 3 2 1 29 29 H 1.09001 * 109.47375 * 60.69689 * 3 2 1 30 30 H 0.97000 * 119.99609 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 59.99841 * 7 5 4 32 32 H 1.09001 * 109.47438 * 299.99667 * 7 5 4 33 33 H 1.09002 * 109.46935 * 59.99966 * 8 7 5 34 34 H 1.08998 * 109.47061 * 300.00759 * 8 7 5 35 35 H 0.97006 * 119.99995 * 359.97438 * 12 11 9 36 36 H 1.09001 * 110.90764 * 20.26846 * 17 2 1 37 37 H 1.09003 * 110.90439 * 143.87331 * 17 2 1 38 38 H 1.09002 * 110.63898 * 204.57002 * 18 17 2 39 39 H 1.08996 * 110.65595 * 81.67750 * 18 17 2 40 40 H 1.08998 * 115.55071 * 152.24735 * 22 20 19 41 41 H 1.09007 * 117.49960 * 0.02562 * 23 22 20 42 42 H 1.08998 * 117.50096 * 145.01865 * 23 22 20 43 43 H 1.09006 * 117.49734 * 214.97659 * 24 22 20 44 44 H 1.08995 * 117.49901 * 359.96979 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.5739 2.1376 -1.1877 5 6 1.9192 3.4229 -1.3997 6 8 2.6354 3.9972 -0.6070 7 6 1.4153 4.1467 -2.6217 8 6 1.9493 5.5805 -2.6217 9 6 1.4449 6.3045 -3.8433 10 1 0.8069 5.7933 -4.5490 11 6 1.7980 7.6195 -4.0601 12 7 2.5754 8.2419 -3.2011 13 14 1.1722 8.5172 -5.5740 14 1 -0.3125 8.5426 -5.5561 15 1 1.6404 7.8140 -6.7954 16 1 1.6907 9.9088 -5.5741 17 6 2.0720 -0.7802 -1.2224 18 6 2.3828 -2.1703 -0.6057 19 8 2.8780 -1.8527 0.7128 20 6 2.0694 -0.7765 1.2169 21 1 1.2392 -1.1776 1.7983 22 6 2.9200 0.1489 2.0893 23 6 4.4257 -0.1170 2.1422 24 6 3.5467 -0.4484 3.3508 25 1 -0.3632 0.5246 -0.8837 26 1 -0.3632 -1.0276 -0.0126 27 1 -0.3633 0.5029 0.8961 28 1 3.1540 1.4155 -0.0126 29 1 1.7198 1.9498 0.8962 30 1 1.0014 1.6781 -1.8218 31 1 0.3255 4.1653 -2.6094 32 1 1.7598 3.6304 -3.5177 33 1 3.0391 5.5623 -2.6338 34 1 1.6046 6.0966 -1.7256 35 1 2.9001 7.7759 -2.4147 36 1 1.3134 -0.8587 -2.0012 37 1 2.9786 -0.3152 -1.6098 38 1 3.1457 -2.6871 -1.1880 39 1 1.4771 -2.7733 -0.5406 40 1 2.5904 1.1869 2.1341 41 1 4.8105 -0.9511 1.5552 42 1 5.0867 0.7459 2.2222 43 1 3.6298 0.1969 4.2254 44 1 3.3527 -1.5004 3.5595 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360648974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:11 Heat of formation + Delta-G solvation = -77.084411 kcal Electronic energy + Delta-G solvation = -22554.687860 eV Core-core repulsion = 19279.103930 eV Total energy + Delta-G solvation = -3275.583930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85994 -39.01521 -36.63818 -35.69569 -33.76760 -32.75472 -30.81316 -29.99257 -27.55090 -26.39504 -24.55281 -23.57284 -22.45390 -21.80095 -20.95062 -19.85401 -19.27268 -17.08754 -16.63692 -16.31346 -15.95935 -15.84721 -15.46422 -15.25462 -14.54352 -14.17787 -14.00611 -13.71672 -13.65139 -13.27120 -12.93331 -12.55306 -12.36163 -12.13357 -11.93650 -11.71715 -11.59091 -11.53071 -11.31761 -11.00735 -10.86924 -10.81514 -10.41639 -10.25548 -10.13812 -10.10730 -9.92351 -9.84759 -9.26818 -8.82176 -8.52559 -8.27958 -6.31313 -4.01435 3.17632 3.39351 3.45407 3.47724 3.54044 3.64342 3.66671 4.10877 4.24619 4.44874 4.58158 4.62309 4.79673 4.80118 4.84596 4.94316 5.01507 5.20352 5.29358 5.38519 5.40629 5.46342 5.49287 5.51879 5.54828 5.62792 5.68775 5.74118 5.80737 5.85238 5.95256 5.99554 6.11301 6.11716 6.11934 6.61467 6.65944 6.75117 7.52757 7.58072 7.80759 8.20437 8.50198 8.69800 8.92891 9.72292 11.09615 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029973 B = 0.003196 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.962657 B = 8757.479645 C = 9278.174583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 C 0.136 3.864 4 N -0.742 5.742 5 C 0.509 3.491 6 O -0.538 6.538 7 C -0.123 4.123 8 C 0.024 3.976 9 C -0.609 4.609 10 H 0.049 0.951 11 C 0.015 3.985 12 N -0.911 5.911 13 Si 1.070 2.930 14 H -0.288 1.288 15 H -0.288 1.288 16 H -0.282 1.282 17 C -0.148 4.148 18 C 0.048 3.952 19 O -0.369 6.369 20 C 0.122 3.878 21 H 0.076 0.924 22 C -0.173 4.173 23 C -0.162 4.162 24 C -0.176 4.176 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.395 0.605 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.014 0.986 34 H 0.014 0.986 35 H 0.272 0.728 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -23.656 7.809 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C 0.013 3.987 4 N -0.397 5.397 5 C 0.297 3.703 6 O -0.413 6.413 7 C -0.163 4.163 8 C -0.013 4.013 9 C -0.647 4.647 10 H 0.067 0.933 11 C -0.190 4.190 12 N -0.546 5.546 13 Si 0.898 3.102 14 H -0.215 1.215 15 H -0.215 1.215 16 H -0.208 1.208 17 C -0.185 4.185 18 C -0.028 4.028 19 O -0.288 6.288 20 C 0.064 3.936 21 H 0.094 0.906 22 C -0.191 4.191 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.229 0.771 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.032 0.968 34 H 0.032 0.968 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.633 -21.862 7.720 23.334 hybrid contribution -0.571 -1.711 0.385 1.844 sum -3.204 -23.573 8.105 25.132 Atomic orbital electron populations 1.21891 0.92870 1.02066 1.02935 1.22145 0.96759 0.95660 0.95502 1.21457 0.99174 0.89455 0.88650 1.46249 1.54015 1.13285 1.26116 1.21525 0.79716 0.80734 0.88321 1.90661 1.36751 1.66563 1.47375 1.21718 1.01472 0.99629 0.93494 1.19008 0.96335 0.88576 0.97385 1.22033 1.34532 0.99507 1.08666 0.93300 1.25852 0.95176 0.95210 1.02719 1.70735 1.31404 1.40082 1.12410 0.83538 0.75792 0.76222 0.74613 1.21487 1.21478 1.20763 1.23326 1.02388 0.95568 0.97252 1.23543 0.99403 0.96214 0.83680 1.88869 1.56496 1.52299 1.31176 1.22172 0.92153 0.86329 0.92970 0.90595 1.22721 0.96309 1.00046 1.00016 1.22876 0.92220 1.03637 1.01202 1.22941 1.04806 1.01527 0.91997 0.91755 0.92153 0.91796 0.91061 0.91457 0.77058 0.90169 0.90167 0.96751 0.96761 0.91730 0.89846 0.89843 0.88958 0.92220 0.85965 0.87799 0.88976 0.88936 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.08 37.16 0.30 -0.77 16 2 C -0.10 -0.90 0.68 -152.98 -0.10 -1.00 16 3 C 0.14 1.67 3.15 -4.04 -0.01 1.66 16 4 N -0.74 -10.14 5.08 -60.29 -0.31 -10.45 16 5 C 0.51 9.74 7.83 -10.99 -0.09 9.65 16 6 O -0.54 -12.64 15.98 5.55 0.09 -12.55 16 7 C -0.12 -2.52 5.64 -27.88 -0.16 -2.68 16 8 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 9 C -0.61 -17.63 9.11 -34.44 -0.31 -17.94 16 10 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 11 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 12 N -0.91 -28.98 13.65 55.43 0.76 -28.22 16 13 Si 1.07 25.54 29.90 -169.99 -5.08 20.45 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C -0.15 -1.20 5.80 -24.60 -0.14 -1.34 16 18 C 0.05 0.37 7.72 38.34 0.30 0.67 16 19 O -0.37 -3.76 9.58 -35.23 -0.34 -4.10 16 20 C 0.12 1.15 3.45 -26.16 -0.09 1.06 16 21 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 22 C -0.17 -1.76 4.39 -90.62 -0.40 -2.16 16 23 C -0.16 -1.70 9.88 -26.70 -0.26 -1.96 16 24 C -0.18 -1.64 10.22 -26.69 -0.27 -1.92 16 25 H 0.06 0.48 6.88 -51.93 -0.36 0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.00 7.51 -51.93 -0.39 0.61 16 29 H 0.07 0.89 6.58 -51.93 -0.34 0.55 16 30 H 0.40 4.27 7.06 -40.82 -0.29 3.99 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.01 0.42 7.96 -51.93 -0.41 0.00 16 34 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 35 H 0.27 8.80 7.22 -40.82 -0.29 8.50 16 36 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 37 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.12 1.33 5.70 -51.93 -0.30 1.03 16 41 H 0.10 1.13 7.06 -51.93 -0.37 0.77 16 42 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 348.87 15.07 5.26 5.26 Total: -1.00 -34.54 348.87 -8.45 -42.99 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.38 Total: 2.45 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -1.44 Total: -15.83 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.45 Total: -38.67 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.25 Total: -16.65 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.54 -8.45 -42.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360648974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.092 kcal (2) G-P(sol) polarization free energy of solvation -34.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds