Wall clock time and date at job start Tue Mar 31 2020 07:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 110.43652 * 2 1 4 4 N 1.46504 * 109.47207 * 298.90823 * 3 2 1 5 5 C 1.34771 * 120.00381 * 180.02562 * 4 3 2 6 6 O 1.21286 * 119.99914 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00211 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47037 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.47128 * 179.97438 * 8 7 5 10 10 H 1.08009 * 119.99710 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00633 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99194 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00315 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47150 * 359.97438 * 13 11 9 15 15 H 1.48507 * 109.46953 * 120.00065 * 13 11 9 16 16 H 1.48500 * 109.46715 * 239.99518 * 13 11 9 17 17 C 1.54820 * 110.48723 * 237.45610 * 2 1 3 18 18 C 1.54993 * 102.09111 * 220.44331 * 17 2 1 19 19 O 1.44386 * 103.49194 * 37.02042 * 18 17 2 20 20 C 1.43739 * 106.97448 * 319.93820 * 19 18 17 21 21 H 1.08993 * 109.88468 * 267.08777 * 20 19 18 22 22 C 1.52999 * 109.99969 * 146.00594 * 20 19 18 23 23 C 1.53002 * 117.49657 * 136.52888 * 22 20 19 24 24 C 1.53001 * 117.49932 * 67.86795 * 22 20 19 25 25 H 1.08998 * 109.47215 * 176.99021 * 1 2 3 26 26 H 1.09004 * 109.47486 * 296.98893 * 1 2 3 27 27 H 1.09003 * 109.47582 * 56.98784 * 1 2 3 28 28 H 1.08996 * 109.47311 * 58.90760 * 3 2 1 29 29 H 1.08996 * 109.47168 * 178.91374 * 3 2 1 30 30 H 0.97005 * 119.99927 * 0.02562 * 4 3 2 31 31 H 1.08996 * 109.46664 * 299.99641 * 7 5 4 32 32 H 1.08996 * 109.47047 * 59.99785 * 7 5 4 33 33 H 1.08996 * 109.47311 * 299.99502 * 8 7 5 34 34 H 1.08996 * 109.47168 * 60.00116 * 8 7 5 35 35 H 0.96999 * 119.99807 * 180.02562 * 12 11 9 36 36 H 1.08998 * 110.90369 * 338.63596 * 17 2 1 37 37 H 1.08995 * 110.90527 * 102.24628 * 17 2 1 38 38 H 1.08996 * 110.61895 * 155.52199 * 18 17 2 39 39 H 1.09009 * 110.61803 * 278.52359 * 18 17 2 40 40 H 1.09002 * 115.55246 * 282.19753 * 22 20 19 41 41 H 1.08996 * 117.50245 * 359.97438 * 23 22 20 42 42 H 1.09001 * 117.49620 * 145.01949 * 23 22 20 43 43 H 1.08994 * 117.49957 * 214.97651 * 24 22 20 44 44 H 1.08991 * 117.49943 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0642 1.4337 0.0000 4 7 1.6090 2.1245 -1.2091 5 6 1.9605 3.4075 -1.4250 6 8 2.6533 3.9905 -0.6181 7 6 1.4918 4.1182 -2.6686 8 6 2.0261 5.5519 -2.6686 9 6 1.5580 6.2624 -3.9124 10 1 0.9413 5.7431 -4.6312 11 6 1.9176 7.5750 -4.1334 12 7 2.6689 8.2070 -3.2583 13 14 1.3379 8.4554 -5.6755 14 1 0.5121 7.5304 -6.4927 15 1 0.5259 9.6389 -5.2941 16 1 2.5152 8.8966 -6.4657 17 6 2.0718 -0.7802 -1.2226 18 6 3.2659 -1.5554 -0.6098 19 8 2.7955 -1.9118 0.7080 20 6 2.0694 -0.7796 1.2149 21 1 2.7350 -0.1431 1.7978 22 6 0.9055 -1.2526 2.0880 23 6 0.6663 -0.5147 3.4068 24 6 1.2485 -1.9304 3.4161 25 1 -0.3633 -1.0262 -0.0540 26 1 -0.3634 0.4664 0.9158 27 1 -0.3634 0.5599 -0.8617 28 1 1.6937 1.9595 0.8800 29 1 3.1538 1.4154 0.0195 30 1 1.0546 1.6583 -1.8544 31 1 1.8615 3.5922 -3.5487 32 1 0.4021 4.1369 -2.6875 33 1 1.6561 6.0776 -1.7885 34 1 3.1158 5.5335 -2.6495 35 1 2.9217 9.1305 -3.4135 36 1 1.3196 -1.4674 -1.6099 37 1 2.4102 -0.0967 -2.0012 38 1 3.4838 -2.4491 -1.1943 39 1 4.1456 -0.9151 -0.5430 40 1 0.0306 -1.6159 1.5488 41 1 1.3384 0.3075 3.6526 42 1 -0.3658 -0.3929 3.7354 43 1 0.5992 -2.7393 3.7508 44 1 2.3034 -2.0397 3.6676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360648975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:16 Heat of formation + Delta-G solvation = -73.105501 kcal Electronic energy + Delta-G solvation = -22330.222200 eV Core-core repulsion = 19054.810809 eV Total energy + Delta-G solvation = -3275.411391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.77574 -38.95031 -36.91182 -35.57706 -33.45128 -32.66246 -30.92600 -30.04815 -27.35042 -26.53373 -25.02631 -23.36870 -22.52158 -21.82274 -20.79469 -19.74027 -19.25994 -17.17201 -16.68294 -16.27663 -15.69676 -15.57118 -15.24784 -15.13879 -14.77974 -14.39776 -14.25882 -13.79996 -13.58579 -13.07386 -12.94865 -12.43504 -12.30335 -12.17390 -11.86104 -11.76886 -11.70653 -11.20576 -11.15602 -10.96832 -10.92771 -10.82920 -10.58409 -10.52137 -10.33007 -9.96638 -9.88999 -9.67020 -9.17646 -9.00661 -8.78974 -8.32624 -5.96572 -4.00905 3.24925 3.25712 3.32052 3.38727 3.41834 3.48403 3.89973 4.16169 4.23063 4.40699 4.47460 4.64347 4.70325 4.77293 4.91669 4.93795 5.05825 5.08809 5.38454 5.39012 5.40021 5.44692 5.45480 5.49604 5.59434 5.62717 5.66263 5.71239 5.82864 5.86809 5.90607 5.97603 6.02770 6.22108 6.23689 6.64299 6.69945 6.89001 7.74316 7.86092 7.87176 8.06960 8.38419 8.77838 9.08001 9.62676 11.14439 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034152 B = 0.002949 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.673000 B = 9492.618565 C = 9734.349468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C 0.135 3.865 4 N -0.742 5.742 5 C 0.509 3.491 6 O -0.535 6.535 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.889 5.889 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.151 4.151 18 C 0.046 3.954 19 O -0.369 6.369 20 C 0.119 3.881 21 H 0.071 0.929 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.172 4.172 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.396 0.604 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -23.052 8.487 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.099 4.099 3 C 0.010 3.990 4 N -0.397 5.397 5 C 0.297 3.703 6 O -0.410 6.410 7 C -0.170 4.170 8 C -0.001 4.001 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.189 4.189 18 C -0.031 4.031 19 O -0.288 6.288 20 C 0.061 3.939 21 H 0.089 0.911 22 C -0.174 4.174 23 C -0.210 4.210 24 C -0.209 4.209 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.231 0.769 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.826 -22.630 9.233 24.739 hybrid contribution -0.540 0.510 -1.250 1.454 sum -4.366 -22.120 7.983 23.919 Atomic orbital electron populations 1.21941 0.92839 1.01863 1.02683 1.22127 0.97476 0.95047 0.95253 1.21215 0.99009 0.89782 0.88965 1.46231 1.55764 1.13671 1.24038 1.21571 0.79279 0.80517 0.88920 1.90674 1.37271 1.65781 1.47244 1.21860 1.01634 1.00504 0.92968 1.18898 0.97003 0.86982 0.97208 1.21260 1.32176 0.97019 1.06005 0.92577 1.25034 0.95177 0.97621 0.96614 1.70011 1.36363 1.11302 1.35145 0.86537 0.78488 0.79690 0.83249 1.19759 1.21011 1.21022 1.23323 0.98461 0.99389 0.97680 1.23548 0.96246 0.99675 0.83617 1.88893 1.71479 1.37161 1.31226 1.22215 0.91511 0.86816 0.93365 0.91091 1.22476 0.99895 1.05458 0.89598 1.23006 1.02434 0.95822 0.99777 1.22885 1.01980 0.95581 1.00412 0.91939 0.91521 0.92225 0.91437 0.91810 0.76914 0.90311 0.90284 0.95828 0.95847 0.93007 0.90061 0.89502 0.88886 0.91981 0.86651 0.88548 0.88438 0.88843 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.00 37.15 0.26 -0.84 16 2 C -0.10 -0.90 0.68 -152.98 -0.10 -1.00 16 3 C 0.13 1.64 4.37 -4.04 -0.02 1.62 16 4 N -0.74 -9.99 4.71 -60.29 -0.28 -10.28 16 5 C 0.51 9.65 7.83 -10.99 -0.09 9.56 16 6 O -0.53 -12.59 15.98 5.55 0.09 -12.51 16 7 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 8 C 0.04 0.99 4.26 -27.89 -0.12 0.87 16 9 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 10 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 13 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.15 -1.26 5.95 -24.72 -0.15 -1.40 16 18 C 0.05 0.40 7.72 38.21 0.29 0.70 16 19 O -0.37 -3.98 11.19 -35.23 -0.39 -4.38 16 20 C 0.12 1.15 3.25 -26.16 -0.08 1.07 16 21 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 22 C -0.16 -1.33 3.94 -90.62 -0.36 -1.68 16 23 C -0.17 -1.35 10.17 -26.69 -0.27 -1.62 16 24 C -0.17 -1.38 10.26 -26.69 -0.27 -1.65 16 25 H 0.06 0.45 6.71 -51.93 -0.35 0.10 16 26 H 0.07 0.55 7.41 -51.93 -0.38 0.17 16 27 H 0.06 0.47 6.93 -51.93 -0.36 0.11 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.40 4.22 6.88 -40.82 -0.28 3.94 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 37 H 0.09 0.74 7.12 -51.93 -0.37 0.37 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.12 0.92 5.89 -51.93 -0.31 0.61 16 41 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.62 15.07 5.30 5.30 Total: -1.00 -33.94 351.62 -8.51 -42.45 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.46 Total: 0.35 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.47 Total: -10.83 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.45 Total: -37.02 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.31 Total: -16.88 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.94 -8.51 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360648975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.659 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds