Wall clock time and date at job start Tue Mar 31 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99773 * 2 1 4 4 H 1.48497 * 109.46789 * 270.27205 * 3 2 1 5 5 H 1.48495 * 109.47323 * 30.27550 * 3 2 1 6 6 H 1.48504 * 109.46907 * 150.27356 * 3 2 1 7 7 C 1.37870 * 120.00031 * 180.27087 * 2 1 3 8 8 H 1.07999 * 120.00084 * 359.73013 * 7 2 1 9 9 C 1.50702 * 120.00111 * 179.72411 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99816 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00105 * 180.02562 * 11 10 9 14 14 C 1.47429 * 125.64953 * 354.75455 * 13 11 10 15 15 C 1.55126 * 104.72415 * 155.81702 * 14 13 11 16 16 C 1.55156 * 101.48449 * 37.29794 * 15 14 13 17 17 C 1.47020 * 125.65171 * 175.06701 * 13 11 10 18 18 H 1.09004 * 109.87843 * 300.43668 * 17 13 11 19 19 C 1.53002 * 109.88226 * 61.60118 * 17 13 11 20 20 C 1.53177 * 109.54268 * 177.19316 * 19 17 13 21 21 C 1.53106 * 109.15884 * 183.24500 * 20 19 17 22 22 O 1.42903 * 109.48727 * 57.46827 * 21 20 19 23 23 C 1.42896 * 114.10086 * 298.89557 * 22 21 20 24 24 C 1.53097 * 109.41754 * 61.15365 * 23 22 21 25 25 H 0.96999 * 119.99764 * 359.72422 * 1 2 3 26 26 H 1.08997 * 109.47201 * 300.00436 * 9 7 2 27 27 H 1.09000 * 109.47166 * 60.00002 * 9 7 2 28 28 H 1.08997 * 109.47232 * 300.00235 * 10 9 7 29 29 H 1.09008 * 109.47110 * 60.00138 * 10 9 7 30 30 H 1.09001 * 110.36971 * 274.75119 * 14 13 11 31 31 H 1.09004 * 110.36324 * 37.07064 * 14 13 11 32 32 H 1.08999 * 111.19445 * 279.19704 * 15 14 13 33 33 H 1.08998 * 110.90565 * 155.27784 * 15 14 13 34 34 H 1.09005 * 110.71797 * 205.96948 * 16 15 14 35 35 H 1.09000 * 110.72380 * 82.69518 * 16 15 14 36 36 H 1.09000 * 109.54083 * 297.36758 * 19 17 13 37 37 H 1.09008 * 109.52071 * 303.05673 * 20 19 17 38 38 H 1.09000 * 109.52759 * 63.24613 * 20 19 17 39 39 H 1.09002 * 109.40149 * 297.49500 * 21 20 19 40 40 H 1.08992 * 109.49288 * 177.50880 * 21 20 19 41 41 H 1.09003 * 109.48082 * 301.17573 * 23 22 21 42 42 H 1.08999 * 109.49540 * 181.14524 * 23 22 21 43 43 H 1.08996 * 109.52225 * 182.48369 * 24 23 22 44 44 H 1.08997 * 109.51790 * 62.29894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4908 2.0498 -1.4001 5 1 1.4495 2.6510 0.7058 6 1 3.5496 1.4386 0.6943 7 6 2.0045 -1.1940 -0.0056 8 1 1.4646 -2.1293 -0.0057 9 6 3.5116 -1.1940 -0.0119 10 6 4.0215 -2.6364 -0.0180 11 6 5.5286 -2.6364 -0.0250 12 8 6.1349 -1.5861 -0.0245 13 7 6.2024 -3.8036 -0.0316 14 6 5.5994 -5.1445 0.0765 15 6 6.6303 -6.0951 -0.5868 16 6 7.9717 -5.4618 -0.1320 17 6 7.6611 -3.9502 -0.1415 18 1 8.0091 -3.5062 -1.0742 19 6 8.3434 -3.2712 1.0478 20 6 9.8573 -3.4886 0.9626 21 6 10.5232 -2.8761 2.1978 22 8 9.9710 -3.4636 3.3777 23 6 8.5668 -3.2501 3.5336 24 6 7.8221 -3.8795 2.3533 25 1 -0.4850 0.8400 0.0040 26 1 3.8712 -0.6780 -0.9022 27 1 3.8786 -0.6822 0.8777 28 1 3.6619 -3.1527 0.8720 29 1 3.6545 -3.1478 -0.9080 30 1 5.4526 -5.4112 1.1232 31 1 4.6518 -5.1788 -0.4610 32 1 6.5392 -6.0792 -1.6728 33 1 6.5272 -7.1099 -0.2025 34 1 8.7681 -5.6964 -0.8384 35 1 8.2348 -5.7951 0.8720 36 1 8.1270 -2.2031 1.0311 37 1 10.0704 -4.5571 0.9277 38 1 10.2442 -3.0095 0.0632 39 1 10.3448 -1.8009 2.2095 40 1 11.5958 -3.0664 2.1647 41 1 8.3628 -2.1797 3.5628 42 1 8.2299 -3.7097 4.4627 43 1 6.7548 -3.6796 2.4476 44 1 7.9929 -4.9560 2.3473 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360765330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:36 Heat of formation + Delta-G solvation = -98.837907 kcal Electronic energy + Delta-G solvation = -23233.764674 eV Core-core repulsion = 19957.237442 eV Total energy + Delta-G solvation = -3276.527232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.62367 -38.91871 -37.30828 -34.08349 -33.42503 -31.72360 -31.24239 -30.96327 -28.80354 -26.20813 -24.78373 -23.70300 -22.84607 -21.92998 -20.81167 -19.40256 -18.48822 -17.21196 -16.72687 -16.34464 -15.99217 -15.67042 -15.08093 -14.86615 -14.85670 -14.23843 -14.09020 -13.74823 -13.40130 -13.10079 -12.85180 -12.61650 -12.50139 -12.20885 -12.06563 -12.02630 -11.59405 -11.43685 -11.24082 -11.02640 -10.97148 -10.76251 -10.62348 -10.21504 -10.14272 -10.03914 -9.78037 -9.68726 -9.20962 -9.13326 -8.52112 -8.42988 -6.03716 -4.02387 3.09465 3.19573 3.37057 3.43668 3.54440 3.74677 4.34476 4.42810 4.50200 4.59232 4.70886 4.76966 4.85843 4.90357 5.11213 5.20648 5.23346 5.24475 5.31852 5.34187 5.45497 5.52874 5.55612 5.61619 5.68057 5.70563 5.73219 5.80498 5.83893 5.92914 5.99192 6.05396 6.10041 6.14567 6.30762 6.56104 6.70674 7.05642 7.35629 7.42675 7.73982 7.82215 8.48968 8.63768 8.99275 9.59467 11.09155 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.004479 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.314764 B = 6249.619216 C = 7042.922471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.117 4.117 11 C 0.527 3.473 12 O -0.537 6.537 13 N -0.623 5.623 14 C 0.100 3.900 15 C -0.133 4.133 16 C -0.132 4.132 17 C 0.145 3.855 18 H 0.071 0.929 19 C -0.102 4.102 20 C -0.148 4.148 21 C 0.061 3.939 22 O -0.386 6.386 23 C 0.060 3.940 24 C -0.145 4.145 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.670 -13.599 2.116 24.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.036 4.036 10 C -0.157 4.157 11 C 0.318 3.682 12 O -0.413 6.413 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.171 4.171 16 C -0.170 4.170 17 C 0.041 3.959 18 H 0.089 0.911 19 C -0.122 4.122 20 C -0.186 4.186 21 C -0.016 4.016 22 O -0.305 6.305 23 C -0.017 4.017 24 C -0.182 4.182 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.879 -12.913 2.241 23.810 hybrid contribution 0.067 0.989 -0.308 1.038 sum 19.946 -11.924 1.933 23.318 Atomic orbital electron populations 1.69912 1.06283 1.26960 1.51090 1.24961 0.94691 0.99183 0.94323 0.86804 0.80626 0.83449 0.78739 1.20243 1.21422 1.18575 1.21104 0.89260 0.94546 1.51320 0.90965 1.19368 0.96412 0.90199 0.97583 1.21655 0.87851 1.03108 1.03086 1.21248 0.91174 0.81436 0.74378 1.90633 1.70698 1.30717 1.49279 1.48730 1.06341 1.06175 1.74709 1.22343 0.97333 0.81985 1.00648 1.22811 0.94498 0.98703 1.01115 1.22814 0.97780 0.93839 1.02544 1.21470 0.81369 0.95325 0.97746 0.91103 1.21550 0.94013 1.02127 0.94489 1.22218 0.95450 1.02108 0.98815 1.22546 0.97737 0.96694 0.84580 1.87892 1.22621 1.77356 1.42603 1.22592 0.80826 0.99913 0.98324 1.22202 1.00774 1.00667 0.94598 0.92717 0.96346 0.95890 0.89840 0.89770 0.91494 0.90124 0.90616 0.90038 0.90453 0.89982 0.89269 0.90925 0.90916 0.93231 0.89068 0.93136 0.89001 0.90793 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.06 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.31 4.57 -27.88 -0.13 -2.44 16 11 C 0.53 9.74 7.67 -10.99 -0.08 9.65 16 12 O -0.54 -11.83 14.88 5.56 0.08 -11.75 16 13 N -0.62 -8.66 2.29 -162.88 -0.37 -9.04 16 14 C 0.10 1.05 6.75 -2.41 -0.02 1.03 16 15 C -0.13 -1.06 7.10 -24.47 -0.17 -1.24 16 16 C -0.13 -1.11 5.13 -24.90 -0.13 -1.24 16 17 C 0.14 1.71 2.72 -66.95 -0.18 1.53 16 18 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 19 C -0.10 -1.23 1.99 -90.44 -0.18 -1.41 16 20 C -0.15 -1.42 5.23 -26.58 -0.14 -1.56 16 21 C 0.06 0.61 6.84 37.21 0.25 0.87 16 22 O -0.39 -4.59 10.77 -35.23 -0.38 -4.97 16 23 C 0.06 0.68 6.84 37.21 0.25 0.93 16 24 C -0.14 -1.65 5.00 -26.59 -0.13 -1.78 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 27 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.56 7.96 -51.92 -0.41 1.14 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.84 7.47 -51.93 -0.39 0.46 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.66 5.45 -51.93 -0.28 0.38 16 36 H 0.09 1.39 6.78 -51.93 -0.35 1.04 16 37 H 0.07 0.63 6.93 -51.92 -0.36 0.27 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.96 7.68 -51.93 -0.40 0.56 16 44 H 0.07 0.73 6.02 -51.93 -0.31 0.41 16 LS Contribution 337.24 15.07 5.08 5.08 Total: -1.00 -33.65 337.24 -8.17 -41.81 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -7.51 Total: -2.77 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.18 Total: -9.11 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.40 Total: -36.33 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.30 Total: -16.72 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.65 -8.17 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360765330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.025 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds