Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47099 * 270.00034 * 3 2 1 5 5 H 1.48499 * 109.46983 * 30.00680 * 3 2 1 6 6 H 1.48508 * 109.47020 * 150.00341 * 3 2 1 7 7 C 1.37876 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00045 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47101 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47023 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47314 * 179.97438 * 11 10 9 13 13 C 1.34768 * 120.00303 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00421 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00044 * 179.97438 * 13 12 11 16 16 H 1.08993 * 109.69586 * 300.56139 * 15 13 12 17 17 C 1.53456 * 109.69822 * 180.02562 * 15 13 12 18 18 C 1.52334 * 109.57281 * 126.11910 * 17 15 13 19 19 C 1.52948 * 110.21449 * 44.39380 * 18 17 15 20 20 C 1.53579 * 109.44110 * 78.33013 * 19 18 17 21 21 C 1.53363 * 108.08114 * 287.88883 * 20 19 18 22 22 C 1.50239 * 109.90011 * 316.58779 * 21 20 19 23 23 O 1.20756 * 120.12795 * 292.62604 * 22 21 20 24 24 C 1.51204 * 119.74015 * 112.60162 * 22 21 20 25 25 H 0.97000 * 120.00544 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47130 * 59.99815 * 9 7 2 27 27 H 1.09004 * 109.46890 * 299.99761 * 9 7 2 28 28 H 1.08997 * 109.47238 * 59.99325 * 10 9 7 29 29 H 1.09004 * 109.46838 * 299.99530 * 10 9 7 30 30 H 1.08997 * 109.47567 * 59.99646 * 11 10 9 31 31 H 1.08995 * 109.47194 * 299.99480 * 11 10 9 32 32 H 0.97009 * 119.99983 * 359.97438 * 12 11 10 33 33 H 1.09004 * 109.44769 * 246.15209 * 17 15 13 34 34 H 1.09002 * 109.45512 * 6.08236 * 17 15 13 35 35 H 1.09004 * 109.34550 * 164.61952 * 18 17 15 36 36 H 1.08995 * 109.34879 * 284.16203 * 18 17 15 37 37 H 1.09006 * 109.47587 * 318.34689 * 19 18 17 38 38 H 1.08999 * 109.48844 * 198.32549 * 19 18 17 39 39 H 1.08999 * 109.74232 * 168.23530 * 20 19 18 40 40 H 1.09002 * 109.73451 * 47.53074 * 20 19 18 41 41 H 1.09005 * 109.40144 * 196.45869 * 21 20 19 42 42 H 1.09003 * 109.33031 * 76.67745 * 21 20 19 43 43 H 1.08997 * 109.91194 * 168.95692 * 24 22 21 44 44 H 1.08998 * 109.98219 * 47.82355 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4323 -6.1006 -0.0005 13 6 1.9831 -7.3712 -0.0006 14 8 0.7908 -7.5930 0.0003 15 6 2.9625 -8.5167 -0.0018 16 1 3.5971 -8.4565 -0.8859 17 6 2.2005 -9.8487 -0.0024 18 6 2.6810 -10.7110 -1.1626 19 6 4.2075 -10.6749 -1.2512 20 6 4.8035 -11.6049 -0.1842 21 6 4.6031 -10.9467 1.1865 22 6 4.9308 -9.4828 1.1037 23 8 6.0676 -9.1263 0.9068 24 6 3.8313 -8.4577 1.2672 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8902 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6043 -0.8906 30 1 0.8533 -5.0451 -0.8896 31 1 0.8541 -5.0446 0.8903 32 1 3.3861 -5.9234 -0.0016 33 1 2.3815 -10.3707 0.9373 34 1 1.1331 -9.6563 -0.1106 35 1 2.3524 -11.7389 -1.0088 36 1 2.2562 -10.3339 -2.0929 37 1 4.5574 -9.6565 -1.0820 38 1 4.5223 -11.0078 -2.2402 39 1 5.8677 -11.7468 -0.3724 40 1 4.2931 -12.5677 -0.2084 41 1 5.2577 -11.4235 1.9162 42 1 3.5654 -11.0685 1.4970 43 1 4.2641 -7.4632 1.3749 44 1 3.2269 -8.6962 2.1423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362754701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = -101.929793 kcal Electronic energy + Delta-G solvation = -22173.059277 eV Core-core repulsion = 18896.397971 eV Total energy + Delta-G solvation = -3276.661306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05121 -39.37999 -37.15419 -35.44982 -33.77999 -33.23027 -31.62121 -31.07751 -27.53916 -27.03347 -25.74456 -23.30464 -22.41554 -21.10540 -20.68333 -19.71691 -19.18926 -17.53676 -16.46787 -16.22223 -16.03910 -15.65096 -15.37668 -15.29866 -14.82578 -14.46959 -14.41055 -13.92917 -13.69678 -13.50994 -12.91115 -12.58145 -12.34954 -12.26832 -12.02158 -11.87067 -11.84697 -11.77885 -11.44888 -11.00325 -10.91386 -10.75497 -10.72153 -10.60088 -10.30289 -10.10218 -9.88909 -9.69528 -9.35072 -9.12542 -8.82967 -8.38484 -6.03094 -4.06263 1.59197 2.68746 3.29364 3.30299 3.36752 3.39934 3.70208 4.22398 4.38428 4.43042 4.43858 4.50908 4.67141 4.73052 4.79596 4.88308 5.02613 5.10788 5.20716 5.28244 5.32772 5.45320 5.53891 5.57080 5.63806 5.64311 5.69820 5.74679 5.78544 5.95194 6.01982 6.13236 6.13872 6.45397 6.57136 6.80088 6.97985 7.16764 7.61789 7.64576 7.74045 7.95497 8.30930 8.37299 9.00429 9.58123 11.08210 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031350 B = 0.002848 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.919745 B = 9829.842149 C =10369.431096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.724 5.724 13 C 0.513 3.487 14 O -0.539 6.539 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.142 4.142 20 C -0.106 4.106 21 C -0.181 4.181 22 C 0.369 3.631 23 O -0.456 6.456 24 C -0.165 4.165 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -24.904 0.792 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.374 5.374 13 C 0.298 3.702 14 O -0.416 6.416 15 C -0.129 4.129 16 H 0.127 0.873 17 C -0.167 4.167 18 C -0.157 4.157 19 C -0.179 4.179 20 C -0.143 4.143 21 C -0.219 4.219 22 C 0.244 3.756 23 O -0.329 6.329 24 C -0.203 4.203 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.904 -24.729 0.690 25.970 hybrid contribution 0.827 1.149 0.033 1.416 sum 8.731 -23.580 0.723 25.155 Atomic orbital electron populations 1.69962 1.06067 1.26713 1.50569 1.25028 0.94858 0.99317 0.95248 0.86581 0.79818 0.83405 0.78118 1.20645 1.21189 1.19868 1.21208 0.93009 0.90947 1.50949 0.92637 1.19026 0.93828 0.90856 0.97638 1.21896 0.99779 0.93356 1.00925 1.21669 0.91865 0.85134 1.02034 1.46240 1.10894 1.05970 1.74337 1.20359 0.89458 0.84055 0.76312 1.90673 1.16731 1.84386 1.49813 1.21743 0.96796 0.95449 0.98950 0.87343 1.21981 1.02500 0.92722 0.99480 1.21513 0.94835 1.00371 0.98986 1.22119 0.96121 1.00168 0.99450 1.21641 1.01659 0.98617 0.92399 1.22418 1.04781 0.94373 1.00312 1.24509 0.88815 0.92266 0.69983 1.90431 1.23644 1.83761 1.35042 1.22628 0.97730 1.00811 0.99132 0.92911 0.96285 0.96280 0.92701 0.92712 0.91720 0.91678 0.76743 0.90401 0.88562 0.91236 0.91661 0.91247 0.91367 0.91247 0.90479 0.89021 0.88426 0.88666 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.96 16 12 N -0.72 -9.94 5.41 -60.30 -0.33 -10.27 16 13 C 0.51 6.95 7.16 -10.99 -0.08 6.87 16 14 O -0.54 -9.30 15.16 5.56 0.08 -9.22 16 15 C -0.11 -1.02 2.15 -91.06 -0.20 -1.22 16 16 H 0.11 0.97 5.56 -51.93 -0.29 0.68 16 17 C -0.13 -1.09 5.04 -26.83 -0.14 -1.22 16 18 C -0.12 -0.84 5.62 -27.10 -0.15 -0.99 16 19 C -0.14 -0.98 5.42 -26.46 -0.14 -1.12 16 20 C -0.11 -0.64 5.94 -26.24 -0.16 -0.79 16 21 C -0.18 -1.13 5.42 -27.92 -0.15 -1.28 16 22 C 0.37 3.25 4.29 -29.01 -0.12 3.13 16 23 O -0.46 -5.61 17.82 6.00 0.11 -5.51 16 24 C -0.16 -1.39 5.10 -27.16 -0.14 -1.52 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.40 4.55 7.94 -40.82 -0.32 4.22 16 33 H 0.08 0.51 4.50 -51.93 -0.23 0.28 16 34 H 0.10 1.05 6.33 -51.93 -0.33 0.72 16 35 H 0.07 0.40 7.83 -51.93 -0.41 0.00 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.57 3.83 -51.93 -0.20 0.37 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.35 7.89 -51.93 -0.41 -0.06 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.47 5.20 -51.93 -0.27 0.20 16 43 H 0.09 0.84 7.50 -51.93 -0.39 0.45 16 44 H 0.10 0.74 7.97 -51.93 -0.41 0.33 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -33.03 341.16 -8.30 -41.33 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.03 Total: -0.30 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.99 Total: -11.60 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.41 Total: -36.34 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.19 Total: -14.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.03 -8.30 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362754701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.597 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds