Wall clock time and date at job start Tue Mar 31 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47358 * 264.73320 * 3 2 1 5 5 H 1.48499 * 109.46822 * 24.73671 * 3 2 1 6 6 H 1.48505 * 109.46968 * 144.73505 * 3 2 1 7 7 C 1.40052 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99930 * 351.28040 * 7 2 1 9 9 C 1.46376 * 120.00289 * 171.28406 * 7 2 1 10 10 O 1.21688 * 119.99820 * 345.13564 * 9 7 2 11 11 N 1.34770 * 120.00156 * 165.13427 * 9 7 2 12 12 C 1.46926 * 120.63098 * 174.74649 * 11 9 7 13 13 C 1.53196 * 108.77520 * 233.62843 * 12 11 9 14 14 C 1.53035 * 109.31501 * 305.36468 * 13 12 11 15 15 O 1.42891 * 109.46279 * 181.38274 * 14 13 12 16 16 C 1.42904 * 114.00137 * 149.99614 * 15 14 13 17 17 C 1.52998 * 109.47247 * 180.02562 * 16 15 14 18 18 C 1.54260 * 110.03381 * 292.91002 * 17 16 15 19 19 C 1.54962 * 104.16177 * 217.13600 * 18 17 16 20 20 C 1.54893 * 102.77645 * 37.88710 * 19 18 17 21 21 C 1.53878 * 110.03103 * 175.69181 * 17 16 15 22 22 C 1.53042 * 109.53703 * 61.35903 * 14 13 12 23 23 C 1.46929 * 120.63285 * 354.76471 * 11 9 7 24 24 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.59229 * 113.83921 * 12 11 9 26 26 H 1.09001 * 109.70539 * 353.48206 * 12 11 9 27 27 H 1.09004 * 109.49633 * 185.40844 * 13 12 11 28 28 H 1.09008 * 109.49350 * 65.31699 * 13 12 11 29 29 H 1.09005 * 109.46007 * 301.36065 * 14 13 12 30 30 H 1.09003 * 109.47481 * 300.00551 * 16 15 14 31 31 H 1.09005 * 109.46871 * 60.00350 * 16 15 14 32 32 H 1.09004 * 110.01412 * 54.30264 * 17 16 15 33 33 H 1.08997 * 110.48846 * 335.78311 * 18 17 16 34 34 H 1.09005 * 110.48401 * 98.42734 * 18 17 16 35 35 H 1.09000 * 110.72410 * 279.57607 * 19 18 17 36 36 H 1.09003 * 110.92632 * 156.29554 * 19 18 17 37 37 H 1.08996 * 110.48605 * 203.40351 * 20 19 18 38 38 H 1.09002 * 110.59595 * 80.82305 * 20 19 18 39 39 H 1.09000 * 110.03164 * 238.57223 * 21 17 16 40 40 H 1.09000 * 110.03200 * 0.02562 * 21 17 16 41 41 H 1.09001 * 109.49538 * 58.59427 * 22 14 13 42 42 H 1.09003 * 109.49772 * 178.68339 * 22 14 13 43 43 H 1.08998 * 109.58435 * 246.15765 * 23 11 9 44 44 H 1.08996 * 109.58398 * 6.44227 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5995 1.9822 -1.3941 5 1 1.3869 2.6821 0.5859 6 1 3.4782 1.4748 0.8084 7 6 2.0070 -1.2129 -0.0005 8 1 1.4763 -2.1428 0.1408 9 6 3.4581 -1.2201 -0.1926 10 8 4.0207 -0.2278 -0.6164 11 7 4.1710 -2.3258 0.0999 12 6 5.6091 -2.3889 -0.1945 13 6 5.8862 -3.6405 -1.0333 14 6 5.3395 -4.8698 -0.3041 15 8 5.6248 -6.0428 -1.0685 16 6 5.8011 -7.2217 -0.2803 17 6 6.1007 -8.4087 -1.1979 18 6 4.8629 -8.7376 -2.0578 19 6 4.8647 -10.2845 -2.1490 20 6 5.3317 -10.7104 -0.7349 21 6 6.3991 -9.6626 -0.3574 22 6 3.8254 -4.7303 -0.1301 23 6 3.5249 -3.4912 0.7189 24 1 -0.4850 0.8400 -0.0004 25 1 6.1711 -2.4421 0.7379 26 1 5.9094 -1.5016 -0.7520 27 1 6.9610 -3.7511 -1.1776 28 1 5.3965 -3.5446 -2.0025 29 1 5.8113 -4.9508 0.6752 30 1 6.6329 -7.0768 0.4091 31 1 4.8907 -7.4200 0.2854 32 1 6.9510 -8.1786 -1.8400 33 1 3.9545 -8.3855 -1.5691 34 1 4.9593 -8.2960 -3.0497 35 1 5.5695 -10.6253 -2.9074 36 1 3.8638 -10.6635 -2.3557 37 1 5.7695 -11.7082 -0.7622 38 1 4.5002 -10.6789 -0.0308 39 1 7.3937 -10.0415 -0.5921 40 1 6.3300 -9.4255 0.7043 41 1 3.3551 -4.6244 -1.1077 42 1 3.4333 -5.6168 0.3685 43 1 3.9169 -3.6343 1.7259 44 1 2.4480 -3.3300 0.7655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363708466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:40 Heat of formation + Delta-G solvation = -116.014937 kcal Electronic energy + Delta-G solvation = -22521.634962 eV Core-core repulsion = 19244.362878 eV Total energy + Delta-G solvation = -3277.272084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42364 -38.55578 -37.27319 -35.32827 -32.84612 -31.57630 -30.68016 -29.88692 -28.86366 -26.71496 -24.76281 -23.61691 -22.71347 -20.94428 -20.66445 -19.83447 -18.87297 -16.97322 -16.85784 -16.09665 -15.61315 -15.47247 -15.01812 -14.91252 -14.20178 -14.12501 -13.88762 -13.55644 -13.40739 -12.94279 -12.60206 -12.33542 -12.06262 -11.99446 -11.71351 -11.45733 -11.33940 -11.27368 -11.22182 -11.07632 -11.00499 -10.85001 -10.71266 -10.57656 -10.54261 -10.36240 -10.18122 -9.52330 -9.20187 -9.01927 -7.91924 -7.57588 -6.61928 -4.83505 3.45829 3.49197 3.62851 3.73219 4.20560 4.21155 4.39773 4.41687 4.56375 4.58663 4.97529 5.02450 5.14630 5.19050 5.24634 5.30102 5.35121 5.38553 5.43623 5.45990 5.52035 5.56906 5.58324 5.67190 5.72085 5.82022 5.86250 5.87678 5.97592 6.06414 6.07907 6.12721 6.18146 6.24867 6.33416 6.43538 6.45475 6.65864 7.07792 7.36692 7.63463 7.87773 8.30723 8.71376 9.13501 10.03364 10.38951 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035261 B = 0.003331 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.896272 B = 8402.787306 C = 8847.309288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.102 3.898 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.322 1.322 6 H -0.265 1.265 7 C -0.533 4.533 8 H 0.091 0.909 9 C 0.555 3.445 10 O -0.617 6.617 11 N -0.633 5.633 12 C 0.122 3.878 13 C -0.128 4.128 14 C 0.095 3.905 15 O -0.382 6.382 16 C 0.069 3.931 17 C -0.091 4.091 18 C -0.113 4.113 19 C -0.128 4.128 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.154 4.154 23 C 0.123 3.877 24 H 0.282 0.718 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.462 -19.372 0.651 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.116 4.116 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.253 1.253 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.109 0.891 9 C 0.364 3.636 10 O -0.509 6.509 11 N -0.367 5.367 12 C -0.003 4.003 13 C -0.166 4.166 14 C 0.037 3.963 15 O -0.301 6.301 16 C -0.008 4.008 17 C -0.110 4.110 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.002 4.002 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.109 0.891 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.566 -18.830 0.244 21.593 hybrid contribution 0.237 0.452 0.318 0.602 sum 10.803 -18.377 0.562 21.325 Atomic orbital electron populations 1.69554 1.07930 1.29993 1.38393 1.25760 0.94733 1.02038 0.89089 0.85236 0.77681 0.77437 0.79763 1.20384 1.25302 1.19088 1.20773 0.88905 0.95721 1.51496 0.89130 1.18332 0.88192 0.80239 0.76804 1.90198 1.72682 1.33601 1.54397 1.47735 1.07201 1.16164 1.65605 1.21209 0.83648 0.97415 0.97982 1.22018 1.00739 0.93439 1.00422 1.22099 0.95072 0.84953 0.94136 1.87916 1.91688 1.16188 1.34346 1.22639 0.99261 0.85482 0.93385 1.21761 0.99176 0.93137 0.96893 1.22368 0.97673 0.94892 1.00166 1.22545 1.01045 0.96126 0.96818 1.22357 0.98488 0.98275 0.97122 1.22137 0.99162 0.94574 0.99753 1.22447 0.96059 0.98575 1.02191 1.21464 1.00593 0.84116 0.93987 0.90803 0.93421 0.89123 0.91256 0.90903 0.92657 0.93840 0.93420 0.90396 0.91343 0.91402 0.91687 0.91650 0.91845 0.91617 0.91585 0.91669 0.90706 0.91734 0.93508 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.59 13.92 55.55 0.77 -22.81 16 2 C 0.10 2.91 5.52 -17.37 -0.10 2.81 16 3 Si 0.97 25.65 25.85 -169.99 -4.39 21.25 16 4 H -0.28 -7.60 7.11 56.52 0.40 -7.19 16 5 H -0.32 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.27 -7.36 6.68 56.52 0.38 -6.99 16 7 C -0.53 -15.02 9.27 -35.63 -0.33 -15.35 16 8 H 0.09 2.52 6.11 -52.49 -0.32 2.20 16 9 C 0.55 14.87 7.28 -12.99 -0.09 14.78 16 10 O -0.62 -18.01 11.88 5.20 0.06 -17.95 16 11 N -0.63 -13.73 2.97 -174.43 -0.52 -14.25 16 12 C 0.12 2.23 6.41 -3.71 -0.02 2.20 16 13 C -0.13 -1.99 5.73 -26.61 -0.15 -2.15 16 14 C 0.09 1.37 2.57 -26.69 -0.07 1.30 16 15 O -0.38 -5.34 9.82 -35.23 -0.35 -5.68 16 16 C 0.07 0.76 4.79 37.16 0.18 0.94 16 17 C -0.09 -0.88 3.19 -89.50 -0.29 -1.16 16 18 C -0.11 -1.11 6.21 -25.04 -0.16 -1.27 16 19 C -0.13 -1.02 6.91 -24.70 -0.17 -1.19 16 20 C -0.12 -0.92 6.83 -25.07 -0.17 -1.09 16 21 C -0.12 -0.92 6.46 -25.61 -0.17 -1.09 16 22 C -0.15 -2.39 5.69 -26.61 -0.15 -2.54 16 23 C 0.12 2.22 6.35 -3.71 -0.02 2.19 16 24 H 0.28 7.39 8.29 -40.82 -0.34 7.05 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.82 7.04 -51.93 -0.37 1.46 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 30 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.05 0.51 7.72 -51.93 -0.40 0.11 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 0.86 7.84 -51.93 -0.41 0.46 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.10 2.03 5.38 -51.93 -0.28 1.75 16 LS Contribution 339.97 15.07 5.12 5.12 Total: -1.00 -31.54 339.97 -8.64 -40.19 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -7.63 Total: -4.26 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.71 Total: -1.61 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.25 Total: -37.06 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.28 Total: -23.63 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.39 Total: 21.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.54 -8.64 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363708466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.827 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds