Wall clock time and date at job start Tue Mar 31 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99787 * 2 1 4 4 H 1.48494 * 109.46967 * 270.00600 * 3 2 1 5 5 H 1.48496 * 109.46839 * 30.00539 * 3 2 1 6 6 H 1.48501 * 109.46783 * 150.00124 * 3 2 1 7 7 C 1.37878 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00024 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99965 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47194 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47287 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00188 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99837 * 355.14118 * 13 12 11 15 15 C 1.50699 * 119.99917 * 175.13615 * 13 12 11 16 16 C 1.52997 * 109.54414 * 292.99272 * 15 13 12 17 17 C 1.53000 * 117.50066 * 2.65127 * 16 15 13 18 18 C 1.53005 * 117.49859 * 293.98965 * 16 15 13 19 19 C 1.53181 * 109.54216 * 172.72510 * 15 13 12 20 20 C 1.53090 * 109.15933 * 297.11128 * 19 15 13 21 21 O 1.42894 * 109.42003 * 302.39077 * 20 19 15 22 22 C 1.42901 * 114.09775 * 61.16180 * 21 20 19 23 23 C 1.53092 * 109.41325 * 298.84215 * 22 21 20 24 24 H 0.96998 * 120.00240 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47064 * 59.99180 * 9 7 2 26 26 H 1.09002 * 109.47318 * 299.99285 * 9 7 2 27 27 H 1.09003 * 109.47225 * 59.99957 * 10 9 7 28 28 H 1.08997 * 109.47371 * 300.00036 * 10 9 7 29 29 H 1.09004 * 109.46764 * 299.99479 * 11 10 9 30 30 H 1.08990 * 109.47569 * 59.99755 * 11 10 9 31 31 H 0.97006 * 119.99807 * 359.97438 * 12 11 10 32 32 H 1.09003 * 115.55288 * 148.33164 * 16 15 13 33 33 H 1.09001 * 117.49607 * 0.02562 * 17 16 15 34 34 H 1.09000 * 117.50132 * 145.01981 * 17 16 15 35 35 H 1.08999 * 117.50267 * 214.97863 * 18 16 15 36 36 H 1.09000 * 117.49925 * 359.97438 * 18 16 15 37 37 H 1.08995 * 109.52411 * 57.01836 * 19 15 13 38 38 H 1.09001 * 109.52218 * 177.21148 * 19 15 13 39 39 H 1.09007 * 109.47807 * 182.40406 * 20 19 15 40 40 H 1.09002 * 109.48092 * 62.38037 * 20 19 15 41 41 H 1.08998 * 109.48360 * 178.86225 * 22 21 20 42 42 H 1.08996 * 109.49051 * 58.82706 * 22 21 20 43 43 H 1.09005 * 109.52416 * 297.70345 * 23 22 21 44 44 H 1.09001 * 109.57635 * 177.54755 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0400 -4.0176 -0.0014 13 6 7.3651 -4.2638 -0.0020 14 8 8.1524 -3.3456 -0.0911 15 6 7.8684 -5.6800 0.1081 16 6 7.5296 -6.2374 1.4921 17 6 6.7313 -5.3394 2.4394 18 6 8.2177 -5.5971 2.6994 19 6 9.3861 -5.7019 -0.0977 20 6 9.7083 -5.2155 -1.5130 21 8 9.0365 -6.0434 -2.4644 22 6 7.6121 -6.0255 -2.3505 23 6 7.2056 -6.5445 -0.9688 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6802 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6579 -3.1505 -0.8907 28 1 3.6587 -3.1501 0.8892 29 1 5.9149 -2.1227 -0.8910 30 1 5.9149 -2.1225 0.8889 31 1 5.4097 -4.7549 -0.0014 32 1 7.3367 -7.3095 1.5329 33 1 6.4471 -4.3517 2.0764 34 1 6.0134 -5.8207 3.1035 35 1 8.4770 -6.2478 3.5346 36 1 8.9120 -4.7791 2.5077 37 1 9.8620 -5.0451 0.6304 38 1 9.7565 -6.7189 0.0310 39 1 10.7842 -5.2694 -1.6798 40 1 9.3738 -4.1844 -1.6280 41 1 7.1778 -6.6631 -3.1205 42 1 7.2500 -5.0052 -2.4764 43 1 7.5320 -7.5786 -0.8576 44 1 6.1221 -6.4912 -0.8629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370062592.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:36 Heat of formation + Delta-G solvation = -74.016801 kcal Electronic energy + Delta-G solvation = -23082.790537 eV Core-core repulsion = 19807.339629 eV Total energy + Delta-G solvation = -3275.450908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.33461 -38.33476 -37.18685 -35.65122 -33.48111 -33.15666 -31.61900 -31.02068 -27.51465 -25.97933 -23.98193 -23.45142 -22.35419 -21.68592 -21.28429 -20.60481 -19.04714 -17.16756 -16.85461 -16.46749 -16.13497 -15.89333 -15.51463 -15.10951 -14.85215 -14.39836 -14.13113 -13.87987 -13.71018 -13.33405 -12.74505 -12.61534 -12.47114 -12.24902 -11.98520 -11.91526 -11.67474 -11.43341 -11.22808 -11.12315 -10.92181 -10.74502 -10.55207 -10.23205 -10.15827 -9.98637 -9.80687 -9.67649 -9.40006 -9.26009 -8.86278 -8.58461 -6.09211 -4.08131 2.59944 3.19636 3.28845 3.36617 3.40315 3.50656 3.73237 4.19463 4.41612 4.42656 4.45980 4.71450 4.74191 4.81783 4.92017 4.98443 5.10015 5.24850 5.34587 5.35310 5.41910 5.48918 5.50220 5.55523 5.58981 5.64493 5.72147 5.76720 5.83903 5.93696 5.95663 5.98193 5.99849 6.30656 6.38796 6.64048 6.74308 7.04259 7.18476 7.31862 7.55305 7.73163 8.23416 8.47108 8.94456 9.53026 11.04017 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.003790 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.955700 B = 7385.303166 C = 7718.909452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.113 3.887 12 N -0.723 5.723 13 C 0.521 3.479 14 O -0.540 6.540 15 C -0.049 4.049 16 C -0.145 4.145 17 C -0.188 4.188 18 C -0.175 4.175 19 C -0.125 4.125 20 C 0.050 3.950 21 O -0.384 6.384 22 C 0.057 3.943 23 C -0.142 4.142 24 H 0.264 0.736 25 H 0.018 0.982 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.676 -15.454 1.072 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.010 4.010 12 N -0.374 5.374 13 C 0.307 3.693 14 O -0.418 6.418 15 C -0.052 4.052 16 C -0.163 4.163 17 C -0.225 4.225 18 C -0.212 4.212 19 C -0.163 4.163 20 C -0.026 4.026 21 O -0.303 6.303 22 C -0.020 4.020 23 C -0.180 4.180 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.235 0.765 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.168 -14.751 0.884 23.419 hybrid contribution -0.257 0.708 0.332 0.824 sum 17.911 -14.042 1.216 22.792 Atomic orbital electron populations 1.69907 1.06316 1.26985 1.50928 1.25021 0.94732 0.99209 0.94434 0.86785 0.80385 0.83578 0.78608 1.20226 1.21333 1.18952 1.21083 0.89273 0.94505 1.51184 0.91011 1.19499 0.97310 0.91437 0.96620 1.21701 0.90531 1.01073 1.01764 1.21668 0.96259 0.81187 1.01901 1.46307 1.06728 1.09963 1.74404 1.20350 0.82642 0.90602 0.75720 1.90664 1.55375 1.46321 1.49400 1.20470 0.97256 0.92445 0.95059 1.22209 1.06354 0.98776 0.89012 1.23432 0.94565 1.01933 1.02545 1.22990 0.95948 1.03389 0.98866 1.22004 0.93067 1.02582 0.98644 1.22795 0.97421 0.95119 0.87304 1.87898 1.18179 1.68310 1.55864 1.22602 0.81937 1.01022 0.96468 1.22284 1.01053 1.00214 0.94460 0.92668 0.96362 0.96786 0.92112 0.92059 0.91765 0.91859 0.76467 0.86765 0.87377 0.88343 0.88581 0.88566 0.89959 0.90514 0.88982 0.91144 0.88390 0.93053 0.89713 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 11 C 0.11 1.78 5.68 -4.04 -0.02 1.76 16 12 N -0.72 -9.31 3.65 -60.30 -0.22 -9.53 16 13 C 0.52 6.93 3.58 -10.99 -0.04 6.89 16 14 O -0.54 -9.04 14.14 5.56 0.08 -8.96 16 15 C -0.05 -0.50 0.53 -155.48 -0.08 -0.58 16 16 C -0.15 -1.30 5.25 -90.62 -0.48 -1.77 16 17 C -0.19 -1.90 9.38 -26.69 -0.25 -2.15 16 18 C -0.18 -1.64 9.61 -26.69 -0.26 -1.90 16 19 C -0.13 -1.28 4.27 -26.59 -0.11 -1.40 16 20 C 0.05 0.57 6.56 37.20 0.24 0.81 16 21 O -0.38 -4.63 10.77 -35.23 -0.38 -5.01 16 22 C 0.06 0.58 6.62 37.21 0.25 0.83 16 23 C -0.14 -1.25 4.76 -26.59 -0.13 -1.37 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 26 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.40 4.34 7.30 -40.82 -0.30 4.04 16 32 H 0.11 0.84 8.07 -51.93 -0.42 0.43 16 33 H 0.11 1.33 5.44 -51.93 -0.28 1.05 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.02 7.29 -51.93 -0.38 0.65 16 37 H 0.08 0.89 6.88 -51.93 -0.36 0.53 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.96 6.07 -51.93 -0.32 0.65 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.61 7.38 -51.93 -0.38 0.22 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.61 7.05 -51.93 -0.37 0.24 16 LS Contribution 339.37 15.07 5.11 5.11 Total: -1.00 -31.77 339.37 -8.24 -40.02 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.38 Total: 2.64 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -1.56 Total: -14.42 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.55 Total: -36.28 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.30 Total: -13.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.77 -8.24 -40.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370062592.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.999 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds