Wall clock time and date at job start Tue Mar 31 2020 08:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46963 * 2 1 4 4 C 1.53001 * 109.47229 * 239.99660 * 2 1 3 5 5 C 1.50704 * 109.46697 * 60.00109 * 4 2 1 6 6 H 1.07997 * 120.00439 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99690 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00027 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47058 * 60.00324 * 9 7 5 11 11 H 1.48499 * 109.47012 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46976 * 300.00294 * 9 7 5 13 13 C 1.53001 * 109.47123 * 119.99750 * 2 1 3 14 14 N 1.46500 * 109.47040 * 300.00600 * 13 2 1 15 15 C 1.34775 * 119.99599 * 180.02562 * 14 13 2 16 16 O 1.21283 * 120.00423 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99924 * 179.97438 * 15 14 13 18 18 H 1.09007 * 110.80475 * 61.85777 * 17 15 14 19 19 C 1.55002 * 110.74940 * 298.54835 * 17 15 14 20 20 C 1.55821 * 102.95099 * 241.76573 * 19 17 15 21 21 H 1.08996 * 115.38614 * 158.02072 * 20 19 17 22 22 C 1.55828 * 105.32496 * 287.21790 * 20 19 17 23 23 C 1.55001 * 102.78723 * 72.68857 * 22 20 19 24 24 C 1.55824 * 102.78801 * 0.02562 * 23 22 20 25 25 H 1.09005 * 115.38488 * 158.11121 * 24 23 22 26 26 O 1.46534 * 101.24511 * 32.32453 * 20 19 17 27 27 H 1.08993 * 109.47245 * 300.00374 * 1 2 3 28 28 H 1.09005 * 109.47111 * 60.00077 * 1 2 3 29 29 H 1.09002 * 109.47236 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46993 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47043 * 299.99433 * 3 2 1 32 32 H 1.08999 * 109.47772 * 60.00060 * 3 2 1 33 33 H 1.08997 * 109.47115 * 179.97438 * 4 2 1 34 34 H 1.08994 * 109.47385 * 300.00156 * 4 2 1 35 35 H 0.97003 * 119.99792 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47420 * 179.97438 * 13 2 1 37 37 H 1.09007 * 109.46942 * 59.99878 * 13 2 1 38 38 H 0.96997 * 120.00106 * 359.97438 * 14 13 2 39 39 H 1.09002 * 110.75159 * 123.34704 * 19 17 15 40 40 H 1.08999 * 110.74738 * 0.18090 * 19 17 15 41 41 H 1.08999 * 110.74697 * 191.01472 * 22 20 19 42 42 H 1.09001 * 110.74696 * 314.36340 * 22 20 19 43 43 H 1.09004 * 110.74876 * 241.67360 * 23 22 20 44 44 H 1.09002 * 110.90202 * 118.39758 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3807 7 6 1.8712 -0.4817 -3.7319 8 7 2.6273 -1.5509 -3.8526 9 14 1.2480 0.3984 -5.2572 10 1 1.7420 1.7988 -5.2572 11 1 1.7431 -0.3016 -6.4697 12 1 -0.2370 0.3973 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8776 -0.4908 3.6695 16 8 2.5749 -1.4768 3.7808 17 6 1.3756 0.2199 4.9000 18 1 0.2864 0.2040 4.9390 19 6 1.9056 1.6757 4.9479 20 6 2.7524 1.6963 6.2558 21 1 3.5105 2.4775 6.3094 22 6 1.7151 1.6723 7.4184 23 6 1.1852 0.2163 7.3755 24 6 1.9872 -0.4079 6.1942 25 1 2.0646 -1.4952 6.2048 26 8 3.2547 0.3202 6.2926 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2492 35 1 2.8616 -1.8824 -4.7336 36 1 3.1300 -0.7216 1.2491 37 1 1.6766 -1.7489 1.2493 38 1 0.9941 0.7582 2.3564 39 1 1.0805 2.3852 5.0109 40 1 2.5301 1.8881 4.0802 41 1 2.1997 1.8789 8.3726 42 1 0.9092 2.3821 7.2317 43 1 0.1154 0.2006 7.1674 44 1 1.4035 -0.3046 8.3078 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376434974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:38 Heat of formation + Delta-G solvation = -91.936366 kcal Electronic energy + Delta-G solvation = -22798.424022 eV Core-core repulsion = 19522.196064 eV Total energy + Delta-G solvation = -3276.227959 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22514 -39.04882 -37.00806 -33.66526 -32.59629 -32.06220 -31.00385 -29.87300 -27.13469 -26.52966 -26.23197 -23.64000 -22.57285 -21.72211 -20.72956 -19.81220 -18.35110 -17.30745 -16.66800 -16.36211 -15.89367 -15.38488 -15.01009 -14.61115 -14.50297 -14.17616 -13.54172 -13.39497 -13.08677 -12.82188 -12.74026 -12.31377 -12.06501 -12.01089 -11.87619 -11.69048 -11.34361 -11.25850 -11.13734 -11.01249 -10.88026 -10.73859 -10.64104 -10.41021 -10.27863 -10.13775 -9.88428 -9.64900 -9.14546 -8.93571 -8.70089 -8.36279 -6.00269 -4.01855 2.82690 3.31331 3.32854 3.36960 3.38391 3.68545 4.21938 4.31384 4.44379 4.44724 4.59344 4.83477 4.85341 4.90547 5.01327 5.22232 5.24547 5.35027 5.50666 5.52039 5.54439 5.62197 5.70363 5.73484 5.73653 5.81874 5.87639 6.15396 6.21565 6.29309 6.36465 6.38706 6.57071 6.61204 6.76821 7.04934 7.06082 7.11998 7.63353 7.75990 7.76604 7.98240 8.39391 8.46608 9.02767 9.61226 11.11167 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.003247 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.432801 B = 8620.695831 C = 8827.016259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.128 3.872 14 N -0.721 5.721 15 C 0.517 3.483 16 O -0.539 6.539 17 C -0.141 4.141 18 H 0.107 0.893 19 C -0.141 4.141 20 C 0.059 3.941 21 H 0.131 0.869 22 C -0.148 4.148 23 C -0.150 4.150 24 C 0.089 3.911 25 H 0.137 0.863 26 O -0.364 6.364 27 H 0.028 0.972 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 8.127 20.942 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.373 5.373 15 C 0.303 3.697 16 O -0.416 6.416 17 C -0.163 4.163 18 H 0.125 0.875 19 C -0.179 4.179 20 C 0.001 3.999 21 H 0.148 0.852 22 C -0.185 4.185 23 C -0.188 4.188 24 C 0.031 3.969 25 H 0.155 0.845 26 O -0.283 6.283 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.232 0.768 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.375 7.197 20.881 22.516 hybrid contribution -0.824 0.880 -1.107 1.637 sum -5.199 8.078 19.774 21.984 Atomic orbital electron populations 1.21756 0.95307 1.01141 1.00164 1.20904 0.95435 0.95850 0.95111 1.21755 1.00561 0.95903 1.00151 1.19082 0.96359 0.95205 0.89454 1.21146 1.31295 1.12094 0.90544 0.92324 1.25015 0.95298 0.95079 0.99077 1.69954 1.36852 1.22996 1.23570 0.86709 0.79132 0.79768 0.82678 1.20321 1.21384 1.20332 1.21622 0.98928 0.95986 0.82952 1.46188 1.53257 1.31987 1.05844 1.20244 0.80497 0.84575 0.84413 1.90699 1.37637 1.26492 1.86775 1.23158 1.01963 0.96429 0.94758 0.87459 1.23293 1.00365 0.94687 0.99555 1.24704 0.94721 0.86695 0.93754 0.85186 1.23251 0.98854 0.97035 0.99405 1.23280 1.00191 0.95980 0.99352 1.24585 0.82691 0.98329 0.91265 0.84515 1.90152 1.27329 1.16550 1.94261 0.95312 0.91445 0.93374 0.93368 0.91447 0.95316 0.96353 0.96360 0.92959 0.91869 0.91879 0.76795 0.89696 0.90049 0.90795 0.90493 0.90456 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.04 0.90 4.04 -27.88 -0.11 0.78 16 5 C -0.51 -13.59 7.65 -34.44 -0.26 -13.85 16 6 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.13 2.29 4.56 -4.04 -0.02 2.27 16 14 N -0.72 -10.45 4.87 -60.29 -0.29 -10.74 16 15 C 0.52 7.79 7.02 -10.98 -0.08 7.71 16 16 O -0.54 -10.46 15.92 5.56 0.09 -10.37 16 17 C -0.14 -1.51 2.92 -88.93 -0.26 -1.77 16 18 H 0.11 0.88 7.82 -51.93 -0.41 0.48 16 19 C -0.14 -1.26 6.10 -24.17 -0.15 -1.41 16 20 C 0.06 0.54 5.71 -23.72 -0.14 0.41 16 21 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 22 C -0.15 -1.04 6.52 -24.16 -0.16 -1.20 16 23 C -0.15 -1.17 6.53 -24.17 -0.16 -1.32 16 24 C 0.09 1.00 4.64 -23.45 -0.11 0.89 16 25 H 0.14 1.64 7.77 -51.93 -0.40 1.23 16 26 O -0.36 -4.85 11.64 -35.23 -0.41 -5.26 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 32 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.40 4.80 6.16 -40.82 -0.25 4.55 16 39 H 0.08 0.54 7.80 -51.93 -0.41 0.14 16 40 H 0.08 0.83 7.73 -51.93 -0.40 0.43 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.42 7.80 -51.93 -0.41 0.02 16 43 H 0.08 0.48 7.82 -51.93 -0.41 0.08 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -32.25 341.47 -8.09 -40.34 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.32 Total: 1.76 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.02 Total: -11.27 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.44 Total: -36.49 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.32 Total: -15.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.25 -8.09 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376434974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.592 kcal (2) G-P(sol) polarization free energy of solvation -32.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds