Wall clock time and date at job start Tue Mar 31 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47358 * 2 1 4 4 C 1.53001 * 109.46637 * 119.99444 * 2 1 3 5 5 C 1.50703 * 109.47484 * 300.00178 * 4 2 1 6 6 H 1.08002 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00278 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99985 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47214 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47080 * 299.99603 * 9 7 5 12 12 H 1.48498 * 109.47173 * 59.99457 * 9 7 5 13 13 C 1.52994 * 109.47118 * 239.99350 * 2 1 3 14 14 N 1.46497 * 109.47210 * 60.00349 * 13 2 1 15 15 C 1.34774 * 120.00357 * 179.97438 * 14 13 2 16 16 O 1.21288 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00446 * 180.02562 * 15 14 13 18 18 H 1.09005 * 115.56552 * 61.54505 * 17 15 14 19 19 C 1.53179 * 117.52295 * 207.32268 * 17 15 14 20 20 C 1.52141 * 117.52221 * 275.77018 * 17 15 14 21 21 C 1.54041 * 121.44090 * 3.48772 * 20 17 15 22 22 C 1.55182 * 101.82937 * 123.35626 * 21 20 17 23 23 O 1.44459 * 103.63284 * 36.32948 * 22 21 20 24 24 C 1.43989 * 107.04629 * 320.43163 * 23 22 21 25 25 H 1.08994 * 109.47022 * 300.00938 * 1 2 3 26 26 H 1.09005 * 109.46696 * 60.00550 * 1 2 3 27 27 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47496 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47102 * 299.99825 * 3 2 1 30 30 H 1.09004 * 109.47595 * 59.99061 * 3 2 1 31 31 H 1.08998 * 109.47188 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47488 * 60.00195 * 4 2 1 33 33 H 0.96995 * 120.00042 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46607 * 180.02562 * 13 2 1 35 35 H 1.08999 * 109.47491 * 300.00338 * 13 2 1 36 36 H 0.97006 * 119.99735 * 0.02562 * 14 13 2 37 37 H 1.08998 * 117.52346 * 214.84383 * 19 17 15 38 38 H 1.09004 * 117.52015 * 359.97438 * 19 17 15 39 39 H 1.08996 * 110.95717 * 241.49516 * 21 20 17 40 40 H 1.09002 * 110.95176 * 5.22866 * 21 20 17 41 41 H 1.08999 * 110.59773 * 277.79390 * 22 21 20 42 42 H 1.09003 * 110.59206 * 154.86440 * 22 21 20 43 43 H 1.09004 * 109.97184 * 266.93123 * 24 23 22 44 44 H 1.08999 * 109.97311 * 145.66241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5376 -0.0107 2.4798 6 1 0.9170 0.8677 2.3806 7 6 1.8710 -0.4813 3.7321 8 7 2.6270 -1.5506 3.8529 9 14 1.2488 0.3997 5.2572 10 1 1.7436 -0.3003 6.4697 11 1 1.7440 1.7998 5.2567 12 1 -0.2362 0.4000 5.2576 13 6 2.0400 -0.7214 -1.2491 14 7 1.5518 -0.0309 -2.4453 15 6 1.8778 -0.4911 -3.6694 16 8 2.5758 -1.4767 -3.7806 17 6 1.3760 0.2195 -4.8999 18 1 1.7044 1.2527 -5.0133 19 6 1.2004 -0.6112 -6.1749 20 6 -0.0181 -0.1335 -5.3963 21 6 -0.9193 -1.1184 -4.6276 22 6 -2.1860 -0.2587 -4.3736 23 8 -2.3051 0.5352 -5.5746 24 6 -0.9731 0.9282 -5.9546 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.1299 -0.7208 1.2497 32 1 1.6766 -1.7488 1.2495 33 1 2.8613 -1.8819 4.7339 34 1 3.1300 -0.7217 -1.2488 35 1 1.6767 -1.7490 -1.2491 36 1 0.9944 0.7581 -2.3564 37 1 1.4123 -0.1241 -7.1266 38 1 1.4482 -1.6714 -6.1233 39 1 -1.1553 -1.9893 -5.2389 40 1 -0.4563 -1.4177 -3.6873 41 1 -2.0463 0.3820 -3.5029 42 1 -3.0619 -0.8949 -4.2461 43 1 -0.7365 1.9031 -5.5281 44 1 -0.8921 0.9673 -7.0409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376438855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:56 Heat of formation + Delta-G solvation = -77.449718 kcal Electronic energy + Delta-G solvation = -22802.954220 eV Core-core repulsion = 19527.354449 eV Total energy + Delta-G solvation = -3275.599770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66180 -39.06783 -37.26883 -35.87794 -33.62014 -32.09170 -30.55441 -27.96994 -27.18039 -26.56176 -26.50905 -24.01828 -23.02308 -22.43065 -20.50204 -19.63379 -18.20970 -16.97851 -16.69154 -16.36501 -16.24741 -15.46539 -15.30182 -14.80732 -14.53958 -14.22376 -13.67917 -13.56712 -13.17568 -12.89612 -12.81495 -12.79751 -12.42033 -12.14010 -12.07877 -11.69355 -11.31361 -11.20305 -11.03699 -10.89978 -10.72906 -10.66931 -10.44373 -10.31774 -10.29583 -9.94351 -9.91829 -9.72373 -9.19873 -8.96851 -8.78822 -8.38306 -6.02403 -4.04063 2.57959 3.17339 3.30145 3.35842 3.36896 3.47791 3.65201 4.08268 4.33812 4.42877 4.52409 4.63413 4.93021 4.97456 5.13647 5.22667 5.32980 5.35245 5.41842 5.44531 5.50405 5.54152 5.57165 5.67935 5.70812 5.73609 5.83339 6.11757 6.17357 6.23235 6.33641 6.51056 6.54416 6.58368 6.71067 7.01554 7.02792 7.08158 7.60164 7.68683 7.72475 7.95792 8.34729 8.38870 9.00453 9.59264 11.09008 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.003727 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.138670 B = 7510.054241 C = 8061.340009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.288 1.288 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.127 3.873 14 N -0.716 5.716 15 C 0.537 3.463 16 O -0.542 6.542 17 C -0.170 4.170 18 H 0.130 0.870 19 C -0.126 4.126 20 C -0.147 4.147 21 C -0.124 4.124 22 C 0.050 3.950 23 O -0.377 6.377 24 C 0.085 3.915 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.399 0.601 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.065 0.935 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 5.217 -18.582 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.214 1.214 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.367 5.367 15 C 0.322 3.678 16 O -0.419 6.419 17 C -0.191 4.191 18 H 0.148 0.852 19 C -0.163 4.163 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.026 4.026 23 O -0.296 6.296 24 C 0.008 3.992 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.234 0.766 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.212 4.438 -18.604 20.109 hybrid contribution -0.191 0.796 1.191 1.445 sum -6.403 5.234 -17.413 19.277 Atomic orbital electron populations 1.21760 0.95266 1.01123 1.00237 1.20902 0.95468 0.95852 0.95024 1.21764 1.00565 0.95886 1.00242 1.19085 0.96354 0.95203 0.89457 1.21137 1.31328 1.12104 0.90523 0.92322 1.25006 0.95272 0.95065 0.99077 1.69951 1.36838 1.22998 1.23587 0.86711 0.79151 0.79777 0.82662 1.21376 1.20317 1.20313 1.21653 0.98993 0.95989 0.82916 1.46191 1.52843 1.31952 1.05681 1.19526 0.80236 0.84150 0.83878 1.90708 1.38024 1.26387 1.86783 1.22359 0.99699 1.01633 0.95376 0.85239 1.22949 0.97869 1.01370 0.94090 1.22303 0.89360 1.00067 1.03041 1.22669 0.95030 0.97730 1.00765 1.23580 0.98103 0.92930 0.88017 1.88923 1.25858 1.71392 1.43399 1.22542 0.81136 0.95437 1.00040 0.91387 0.95303 0.93374 0.93351 0.95277 0.91392 0.96361 0.96360 0.92953 0.91767 0.91828 0.76586 0.87582 0.87277 0.89711 0.89653 0.91639 0.88667 0.91709 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.13 2.18 4.56 -4.05 -0.02 2.16 16 14 N -0.72 -9.90 4.96 -60.30 -0.30 -10.20 16 15 C 0.54 7.66 6.12 -10.99 -0.07 7.60 16 16 O -0.54 -9.97 16.61 5.55 0.09 -9.87 16 17 C -0.17 -1.75 6.07 -92.12 -0.56 -2.31 16 18 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 19 C -0.13 -1.17 9.83 -27.00 -0.27 -1.43 16 20 C -0.15 -1.37 2.44 -154.60 -0.38 -1.75 16 21 C -0.12 -1.25 6.75 -25.03 -0.17 -1.42 16 22 C 0.05 0.47 7.73 38.31 0.30 0.77 16 23 O -0.38 -4.06 11.53 -35.23 -0.41 -4.47 16 24 C 0.09 0.73 7.50 37.33 0.28 1.01 16 25 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 26 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 30 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 4.72 6.16 -40.82 -0.25 4.47 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 1.18 7.93 -51.93 -0.41 0.76 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.99 6.93 -51.93 -0.36 0.63 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -30.87 349.86 -7.82 -38.69 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.35 Total: 1.99 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.84 Total: -11.91 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.44 Total: -35.65 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.31 Total: -14.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.87 -7.82 -38.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376438855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.762 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds