Wall clock time and date at job start Tue Mar 31 2020 08:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47358 * 2 1 4 4 C 1.53001 * 109.46637 * 119.99444 * 2 1 3 5 5 C 1.50703 * 109.47484 * 300.00178 * 4 2 1 6 6 H 1.08002 * 119.99850 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00278 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99985 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47214 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47080 * 299.99603 * 9 7 5 12 12 H 1.48498 * 109.47173 * 59.99457 * 9 7 5 13 13 C 1.52994 * 109.47118 * 239.99350 * 2 1 3 14 14 N 1.46497 * 109.47210 * 60.00349 * 13 2 1 15 15 C 1.34774 * 120.00357 * 179.97438 * 14 13 2 16 16 O 1.21288 * 119.99704 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00446 * 180.02562 * 15 14 13 18 18 H 1.09005 * 115.56552 * 61.54505 * 17 15 14 19 19 C 1.53179 * 117.52295 * 207.32268 * 17 15 14 20 20 C 1.52141 * 117.52221 * 275.77018 * 17 15 14 21 21 C 1.54041 * 121.44090 * 3.48772 * 20 17 15 22 22 C 1.55182 * 101.82937 * 123.35626 * 21 20 17 23 23 O 1.44459 * 103.63284 * 36.32948 * 22 21 20 24 24 C 1.43989 * 107.04629 * 320.43163 * 23 22 21 25 25 H 1.08994 * 109.47022 * 300.00938 * 1 2 3 26 26 H 1.09005 * 109.46696 * 60.00550 * 1 2 3 27 27 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47496 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.47102 * 299.99825 * 3 2 1 30 30 H 1.09004 * 109.47595 * 59.99061 * 3 2 1 31 31 H 1.08998 * 109.47188 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.47488 * 60.00195 * 4 2 1 33 33 H 0.96995 * 120.00042 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.46607 * 180.02562 * 13 2 1 35 35 H 1.08999 * 109.47491 * 300.00338 * 13 2 1 36 36 H 0.97006 * 119.99735 * 0.02562 * 14 13 2 37 37 H 1.08998 * 117.52346 * 214.84383 * 19 17 15 38 38 H 1.09004 * 117.52015 * 359.97438 * 19 17 15 39 39 H 1.08996 * 110.95717 * 241.49516 * 21 20 17 40 40 H 1.09002 * 110.95176 * 5.22866 * 21 20 17 41 41 H 1.08999 * 110.59773 * 277.79390 * 22 21 20 42 42 H 1.09003 * 110.59206 * 154.86440 * 22 21 20 43 43 H 1.09004 * 109.97184 * 266.93123 * 24 23 22 44 44 H 1.08999 * 109.97311 * 145.66241 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.5376 -0.0107 2.4798 6 1 0.9170 0.8677 2.3806 7 6 1.8710 -0.4813 3.7321 8 7 2.6270 -1.5506 3.8529 9 14 1.2488 0.3997 5.2572 10 1 1.7436 -0.3003 6.4697 11 1 1.7440 1.7998 5.2567 12 1 -0.2362 0.4000 5.2576 13 6 2.0400 -0.7214 -1.2491 14 7 1.5518 -0.0309 -2.4453 15 6 1.8778 -0.4911 -3.6694 16 8 2.5758 -1.4767 -3.7806 17 6 1.3760 0.2195 -4.8999 18 1 1.7044 1.2527 -5.0133 19 6 1.2004 -0.6112 -6.1749 20 6 -0.0181 -0.1335 -5.3963 21 6 -0.9193 -1.1184 -4.6276 22 6 -2.1860 -0.2587 -4.3736 23 8 -2.3051 0.5352 -5.5746 24 6 -0.9731 0.9282 -5.9546 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 3.1299 -0.7208 1.2497 32 1 1.6766 -1.7488 1.2495 33 1 2.8613 -1.8819 4.7339 34 1 3.1300 -0.7217 -1.2488 35 1 1.6767 -1.7490 -1.2491 36 1 0.9944 0.7581 -2.3564 37 1 1.4123 -0.1241 -7.1266 38 1 1.4482 -1.6714 -6.1233 39 1 -1.1553 -1.9893 -5.2389 40 1 -0.4563 -1.4177 -3.6873 41 1 -2.0463 0.3820 -3.5029 42 1 -3.0619 -0.8949 -4.2461 43 1 -0.7365 1.9031 -5.5281 44 1 -0.8921 0.9673 -7.0409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376438855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:56 Heat of formation + Delta-G solvation = -97.271744 kcal Electronic energy + Delta-G solvation = -22803.813767 eV Core-core repulsion = 19527.354449 eV Total energy + Delta-G solvation = -3276.459318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60073 -40.11334 -38.69224 -36.76772 -35.24664 -33.90209 -31.30222 -29.25925 -28.63787 -27.97292 -27.74731 -25.47122 -23.99271 -23.69331 -21.47798 -20.62858 -19.65996 -18.37381 -18.03207 -17.50184 -17.05851 -16.76797 -16.42155 -16.07178 -15.98342 -15.39789 -15.00858 -14.74557 -14.52858 -14.28863 -13.94259 -13.88721 -13.58141 -13.47996 -13.27052 -12.84331 -12.76121 -12.59716 -12.44717 -12.33648 -12.23511 -12.03649 -12.01412 -11.54778 -11.49275 -11.24294 -11.01519 -10.89182 -10.74318 -10.52904 -10.50936 -10.09531 -8.14178 -6.22223 1.42772 1.44576 1.49398 1.51839 2.10926 2.44642 2.62367 2.96492 3.20372 3.29332 3.60395 3.73357 3.88194 3.94941 4.06094 4.09142 4.20863 4.24285 4.42344 4.51763 4.67669 4.69995 4.74140 4.75847 4.77099 4.84065 4.86677 4.94386 4.96122 4.99586 5.07912 5.10592 5.11682 5.38081 5.45581 5.49528 5.52816 5.56298 5.79258 5.86530 5.89377 6.29594 6.55789 6.92874 7.23228 7.45793 8.98182 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026281 B = 0.003727 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.138670 B = 7510.054241 C = 8061.340009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.292 1.292 11 H -0.266 1.266 12 H -0.266 1.266 13 C 0.141 3.859 14 N -0.703 5.703 15 C 0.536 3.464 16 O -0.589 6.589 17 C -0.171 4.171 18 H 0.161 0.839 19 C -0.124 4.124 20 C -0.137 4.137 21 C -0.129 4.129 22 C 0.051 3.949 23 O -0.395 6.395 24 C 0.085 3.915 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.056 0.944 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.260 0.740 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.413 0.587 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 7.982 -20.146 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.218 1.218 11 H -0.191 1.191 12 H -0.191 1.191 13 C 0.017 3.983 14 N -0.354 5.354 15 C 0.323 3.677 16 O -0.469 6.469 17 C -0.191 4.191 18 H 0.179 0.821 19 C -0.161 4.161 20 C -0.138 4.138 21 C -0.167 4.167 22 C -0.025 4.025 23 O -0.314 6.314 24 C 0.009 3.991 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.251 0.749 37 H 0.155 0.845 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.100 0.900 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.908 7.246 -20.183 22.856 hybrid contribution 0.352 -0.134 1.630 1.673 sum -7.555 7.112 -18.553 21.257 Atomic orbital electron populations 1.21685 0.93477 1.00962 1.01644 1.20695 0.96766 0.96253 0.92678 1.21700 0.99904 0.94636 1.01695 1.18968 0.94214 0.94181 0.92395 1.21561 1.30513 1.12119 0.91054 0.90898 1.25939 0.95622 0.95833 1.02707 1.70114 1.38751 1.24994 1.24154 0.85609 0.78990 0.78770 0.78340 1.21761 1.19127 1.19105 1.21212 0.97735 0.95332 0.84029 1.45964 1.52754 1.32054 1.04666 1.20251 0.79118 0.83489 0.84818 1.90693 1.40170 1.28628 1.87449 1.22365 1.00590 1.02704 0.93487 0.82141 1.23061 0.97583 1.00455 0.94999 1.22299 0.88991 1.00026 1.02443 1.22669 0.95739 0.98264 1.00022 1.23619 0.97983 0.92910 0.87968 1.88909 1.27172 1.71578 1.43755 1.22712 0.79763 0.95464 1.01196 0.92557 0.91181 0.94409 0.94480 0.91110 0.92536 0.99704 0.99646 0.93178 0.93719 0.93714 0.74895 0.84526 0.89370 0.89805 0.91536 0.91075 0.87907 0.90045 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 2 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 3 C -0.12 -3.97 8.05 71.98 0.58 -3.39 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.25 7.65 25.60 0.20 -27.05 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 9 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 C 0.14 4.92 4.56 86.38 0.39 5.32 16 14 N -0.70 -18.42 4.96 -463.08 -2.30 -20.72 16 15 C 0.54 14.72 6.12 87.66 0.54 15.25 16 16 O -0.59 -21.99 16.61 -3.05 -0.05 -22.04 16 17 C -0.17 -3.03 6.07 -11.76 -0.07 -3.10 16 18 H 0.16 1.90 8.14 -2.38 -0.02 1.88 16 19 C -0.12 -2.00 9.83 30.42 0.30 -1.70 16 20 C -0.14 -2.17 2.44 -52.24 -0.13 -2.29 16 21 C -0.13 -2.40 6.75 31.69 0.21 -2.19 16 22 C 0.05 0.85 7.73 72.73 0.56 1.41 16 23 O -0.39 -7.33 11.53 -148.98 -1.72 -9.05 16 24 C 0.08 1.12 7.50 72.09 0.54 1.66 16 25 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 26 H 0.07 1.67 6.86 -2.38 -0.02 1.65 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.70 6.86 -2.38 -0.02 1.69 16 30 H 0.06 1.98 6.62 -2.38 -0.02 1.96 16 31 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 8.39 6.16 -92.70 -0.57 7.82 16 37 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.84 7.93 -2.38 -0.02 1.82 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.07 1.49 6.93 -2.39 -0.02 1.47 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -70.02 349.86 2.91 -67.11 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.41 Total: 15.50 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 4.26 Total: -19.37 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.01 Total: -77.33 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.77 Total: -31.09 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.02 2.91 -67.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376438855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.163 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds