Wall clock time and date at job start Tue Mar 31 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47262 * 2 1 4 4 C 1.52997 * 109.46906 * 240.00290 * 2 1 3 5 5 C 1.50694 * 109.47495 * 60.00029 * 4 2 1 6 6 H 1.08008 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00493 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99919 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00210 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47381 * 60.00070 * 9 7 5 11 11 H 1.48503 * 109.47101 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47049 * 299.99601 * 9 7 5 13 13 C 1.52999 * 109.47030 * 120.00443 * 2 1 3 14 14 N 1.46499 * 109.46908 * 299.99587 * 13 2 1 15 15 C 1.34777 * 119.99803 * 180.02562 * 14 13 2 16 16 O 1.21285 * 120.00169 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.99917 * 180.02562 * 15 14 13 18 18 H 1.08999 * 115.56272 * 61.59797 * 17 15 14 19 19 C 1.53183 * 117.52100 * 207.46324 * 17 15 14 20 20 C 1.52100 * 59.77124 * 107.41812 * 19 17 15 21 21 C 1.53714 * 121.74411 * 111.08374 * 20 19 17 22 22 C 1.54697 * 103.69431 * 143.51842 * 21 20 19 23 23 O 1.44496 * 104.87271 * 23.83146 * 22 21 20 24 24 C 1.44645 * 105.46136 * 320.02535 * 23 22 21 25 25 H 1.09000 * 109.47074 * 299.99685 * 1 2 3 26 26 H 1.09005 * 109.47054 * 59.99620 * 1 2 3 27 27 H 1.08995 * 109.47349 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47339 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47396 * 300.00170 * 3 2 1 30 30 H 1.09000 * 109.46818 * 60.00159 * 3 2 1 31 31 H 1.09001 * 109.47323 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.47302 * 300.00164 * 4 2 1 33 33 H 0.96998 * 120.00185 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46991 * 59.99859 * 13 2 1 35 35 H 1.09003 * 109.46857 * 179.97438 * 13 2 1 36 36 H 0.96998 * 120.00302 * 0.02562 * 14 13 2 37 37 H 1.09003 * 117.52104 * 214.84111 * 19 17 15 38 38 H 1.08997 * 117.52533 * 359.97438 * 19 17 15 39 39 H 1.09007 * 110.57634 * 262.06569 * 21 20 19 40 40 H 1.08997 * 110.58389 * 24.96254 * 21 20 19 41 41 H 1.09001 * 110.36286 * 142.67963 * 22 21 20 42 42 H 1.09004 * 110.35999 * 264.98326 * 22 21 20 43 43 H 1.08998 * 110.41793 * 280.89078 * 24 23 22 44 44 H 1.09000 * 110.41866 * 158.42513 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8528 9 14 1.2482 0.3990 -5.2572 10 1 1.7443 1.7987 -5.2573 11 1 1.7431 -0.3011 -6.4697 12 1 -0.2368 0.4001 -5.2571 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8778 -0.4910 3.6694 16 8 2.5757 -1.4766 3.7807 17 6 1.3750 0.2191 4.9000 18 1 0.2915 0.2525 5.0140 19 6 2.2190 0.1115 6.1738 20 6 2.1713 1.4170 5.3948 21 6 1.4804 2.6696 5.9574 22 6 2.3758 3.8325 5.4686 23 8 3.0524 3.3144 4.3016 24 6 3.3935 1.9473 4.6288 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1300 -0.7216 -1.2491 32 1 1.6766 -1.7489 -1.2494 33 1 2.8607 -1.8828 -4.7338 34 1 1.6767 -1.7490 1.2491 35 1 3.1301 -0.7217 1.2489 36 1 0.9938 0.7577 2.3564 37 1 1.6906 0.0737 7.1264 38 1 3.1374 -0.4732 6.1216 39 1 0.4728 2.7657 5.5527 40 1 1.4554 2.6369 7.0466 41 1 1.7652 4.6949 5.2012 42 1 3.0995 4.1030 6.2376 43 1 4.2808 1.9178 5.2612 44 1 3.5536 1.3674 3.7200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376438857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:23 Heat of formation + Delta-G solvation = -76.529957 kcal Electronic energy + Delta-G solvation = -22799.933276 eV Core-core repulsion = 19524.373389 eV Total energy + Delta-G solvation = -3275.559887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63801 -39.02115 -37.20605 -35.86523 -33.56686 -32.04797 -30.64948 -27.72433 -27.16701 -26.52004 -26.47758 -24.00360 -23.09804 -22.40268 -20.38001 -19.62349 -18.18743 -16.97495 -16.70230 -16.31516 -16.01228 -15.49383 -15.35903 -14.73859 -14.50250 -14.25553 -13.74115 -13.40796 -13.13716 -13.09080 -12.74215 -12.56494 -12.39859 -12.07467 -12.03409 -11.77687 -11.25398 -11.13550 -10.98271 -10.85812 -10.71542 -10.60893 -10.39048 -10.34916 -10.24664 -9.94381 -9.85323 -9.71071 -9.14279 -8.91891 -8.72694 -8.34178 -5.98404 -3.99690 2.61434 3.19332 3.33380 3.38616 3.40008 3.50134 3.73593 4.10772 4.37827 4.46563 4.53186 4.58615 4.82789 5.01582 5.14072 5.20902 5.35336 5.37042 5.39673 5.45038 5.53472 5.53806 5.61403 5.63500 5.67400 5.77934 5.82686 6.20091 6.25588 6.29292 6.41560 6.52771 6.58058 6.65940 6.78508 7.07929 7.10544 7.14664 7.65029 7.74660 7.77675 8.00214 8.39316 8.43603 9.04829 9.63342 11.13073 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026282 B = 0.003750 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.101579 B = 7465.111526 C = 8010.326786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.127 3.873 14 N -0.713 5.713 15 C 0.535 3.465 16 O -0.543 6.543 17 C -0.167 4.167 18 H 0.129 0.871 19 C -0.127 4.127 20 C -0.146 4.146 21 C -0.119 4.119 22 C 0.045 3.955 23 O -0.367 6.367 24 C 0.078 3.922 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 8.712 20.935 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.004 3.996 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.421 6.421 17 C -0.188 4.188 18 H 0.147 0.853 19 C -0.164 4.164 20 C -0.147 4.147 21 C -0.157 4.157 22 C -0.032 4.032 23 O -0.285 6.285 24 C 0.001 3.999 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.617 8.000 20.641 22.291 hybrid contribution -0.738 0.592 -0.803 1.241 sum -3.355 8.592 19.838 21.877 Atomic orbital electron populations 1.21761 0.95319 1.01094 1.00246 1.20902 0.95439 0.95948 0.94959 1.21752 1.00535 0.95749 1.00357 1.19083 0.96345 0.95177 0.89488 1.21148 1.31215 1.12066 0.90529 0.92309 1.25008 0.95314 0.95068 0.99060 1.69956 1.36926 1.23034 1.23533 0.86711 0.79127 0.79799 0.82664 1.20307 1.21402 1.20336 1.21656 0.98914 0.96016 0.82970 1.46192 1.52858 1.31726 1.05634 1.19549 0.80350 0.84167 0.83957 1.90705 1.38224 1.26367 1.86825 1.22330 0.99790 1.01515 0.95194 0.85302 1.22912 1.02183 0.97099 0.94247 1.22271 0.99133 0.90366 1.02901 1.22449 0.99830 0.92283 1.01134 1.23440 0.94603 0.96716 0.88433 1.89237 1.77278 1.25586 1.36406 1.22851 0.94398 0.82970 0.99642 0.95264 0.91418 0.93409 0.93407 0.91494 0.95019 0.96358 0.96396 0.92994 0.91790 0.91822 0.76396 0.87599 0.87280 0.90031 0.89933 0.88885 0.92189 0.91346 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.38 0.54 -154.51 -0.08 -1.47 16 3 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.67 7.65 -34.44 -0.26 -13.93 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.13 2.28 4.56 -4.04 -0.02 2.26 16 14 N -0.71 -10.51 4.96 -60.29 -0.30 -10.81 16 15 C 0.53 7.93 6.11 -10.98 -0.07 7.87 16 16 O -0.54 -10.17 16.61 5.55 0.09 -10.07 16 17 C -0.17 -1.79 6.07 -92.13 -0.56 -2.35 16 18 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.13 -1.17 9.82 -27.09 -0.27 -1.44 16 20 C -0.15 -1.38 2.50 -154.69 -0.39 -1.77 16 21 C -0.12 -0.86 6.88 -25.47 -0.18 -1.03 16 22 C 0.04 0.37 7.65 38.05 0.29 0.66 16 23 O -0.37 -4.44 11.65 -35.23 -0.41 -4.85 16 24 C 0.08 0.88 7.28 37.51 0.27 1.16 16 25 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 26 H 0.07 1.29 6.62 -51.93 -0.34 0.95 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.03 0.48 6.86 -51.93 -0.36 0.13 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.40 5.22 6.16 -40.82 -0.25 4.97 16 37 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.11 1.15 7.94 -51.93 -0.41 0.73 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.27 6.88 -51.93 -0.36 0.91 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -31.50 349.81 -7.85 -39.35 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.35 Total: 2.38 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.87 Total: -11.72 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.44 Total: -36.66 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.32 Total: -14.92 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.50 -7.85 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376438857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.183 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds