Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48492 * 109.47335 * 274.99034 * 3 2 1 5 5 H 1.48507 * 109.46710 * 34.99138 * 3 2 1 6 6 H 1.48500 * 109.47303 * 154.98797 * 3 2 1 7 7 C 1.37874 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00380 * 189.58267 * 7 2 1 9 9 C 1.50707 * 119.99756 * 9.58238 * 7 2 1 10 10 C 1.53045 * 109.45870 * 185.44903 * 9 7 2 11 11 C 1.53194 * 109.31222 * 178.62813 * 10 9 7 12 12 N 1.46918 * 108.77617 * 54.63169 * 11 10 9 13 13 C 1.34776 * 120.63118 * 126.36728 * 12 11 10 14 14 O 1.21285 * 119.99824 * 0.02562 * 13 12 11 15 15 C 1.50695 * 120.00394 * 180.02562 * 13 12 11 16 16 C 1.53005 * 109.47184 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46932 * 179.97438 * 16 15 13 18 18 H 1.09000 * 110.55115 * 56.42849 * 17 16 15 19 19 C 1.55223 * 110.77483 * 179.28889 * 17 16 15 20 20 C 1.54808 * 101.98489 * 155.50446 * 19 17 16 21 21 C 1.54102 * 104.30698 * 339.26035 * 20 19 17 22 22 O 1.43747 * 107.29170 * 357.90424 * 21 20 19 23 23 C 1.46922 * 118.74315 * 306.64799 * 12 11 10 24 24 C 1.52767 * 109.01141 * 53.30573 * 23 12 11 25 25 H 0.97004 * 120.00025 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.45876 * 305.42027 * 9 7 2 27 27 H 1.09007 * 109.49506 * 58.67506 * 10 9 7 28 28 H 1.08996 * 109.52147 * 298.59808 * 10 9 7 29 29 H 1.09002 * 109.58281 * 294.84375 * 11 10 9 30 30 H 1.08997 * 109.69905 * 174.49432 * 11 10 9 31 31 H 1.08999 * 109.47311 * 59.99949 * 15 13 12 32 32 H 1.09004 * 109.47128 * 300.00153 * 15 13 12 33 33 H 1.09000 * 109.46846 * 60.00161 * 16 15 13 34 34 H 1.08994 * 109.46999 * 299.99960 * 16 15 13 35 35 H 1.09000 * 110.89402 * 37.37312 * 19 17 16 36 36 H 1.08995 * 111.02286 * 273.69454 * 19 17 16 37 37 H 1.09000 * 110.48688 * 220.51997 * 20 19 17 38 38 H 1.09002 * 110.49197 * 98.00868 * 20 19 17 39 39 H 1.09000 * 109.87519 * 117.32650 * 21 20 19 40 40 H 1.08998 * 109.87968 * 238.48370 * 21 20 19 41 41 H 1.09000 * 109.59230 * 173.14438 * 23 12 11 42 42 H 1.09007 * 109.58563 * 293.56763 * 23 12 11 43 43 H 1.08993 * 109.56460 * 185.55535 * 24 23 12 44 44 H 1.08998 * 109.38165 * 65.51665 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4121 0.5920 7 6 2.0046 -1.1940 0.0005 8 1 3.0732 -1.2005 0.1562 9 6 1.2668 -2.4901 -0.2162 10 6 2.2328 -3.6632 -0.0345 11 6 1.4721 -4.9797 -0.2216 12 7 0.7938 -4.9527 -1.5246 13 6 0.9779 -5.9473 -2.4153 14 8 1.7090 -6.8764 -2.1443 15 6 0.2756 -5.9051 -3.7479 16 6 0.6532 -7.1437 -4.5629 17 6 -0.0605 -7.1011 -5.9157 18 1 0.1792 -6.1794 -6.4459 19 6 0.3158 -8.3372 -6.7758 20 6 -0.9036 -8.4534 -7.7225 21 6 -2.0239 -7.6835 -6.9966 22 8 -1.4878 -7.2313 -5.7418 23 6 -0.0842 -3.8179 -1.8408 24 6 0.6896 -2.5172 -1.6333 25 1 -0.4850 0.8401 -0.0004 26 1 0.4561 -2.5719 0.5078 27 1 2.6613 -3.6298 0.9673 28 1 3.0308 -3.5958 -0.7739 29 1 0.7338 -5.0911 0.5725 30 1 2.1710 -5.8155 -0.1906 31 1 0.5766 -5.0081 -4.2890 32 1 -0.8028 -5.8894 -3.5899 33 1 0.3518 -8.0406 -4.0216 34 1 1.7315 -7.1598 -4.7209 35 1 0.4126 -9.2279 -6.1551 36 1 1.2307 -8.1569 -7.3403 37 1 -1.1839 -9.4981 -7.8570 38 1 -0.6848 -7.9912 -8.6851 39 1 -2.3346 -6.8282 -7.5967 40 1 -2.8732 -8.3435 -6.8204 41 1 -0.4101 -3.8860 -2.8787 42 1 -0.9521 -3.8326 -1.1814 43 1 0.0197 -1.6683 -1.7696 44 1 1.5017 -2.4598 -2.3581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397227311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -123.900813 kcal Electronic energy + Delta-G solvation = -22451.302131 eV Core-core repulsion = 19173.688090 eV Total energy + Delta-G solvation = -3277.614041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.19870 -40.23391 -38.44564 -35.29866 -34.64426 -33.09881 -32.87225 -31.81537 -29.60375 -27.94921 -25.65893 -24.38937 -23.78001 -22.37666 -22.00430 -21.26178 -19.67374 -18.58974 -17.94273 -17.62926 -16.86020 -16.62960 -16.45818 -16.41003 -15.91172 -14.95481 -14.87496 -14.80065 -14.50078 -14.37148 -14.16564 -13.80256 -13.62483 -13.26056 -13.19052 -12.78129 -12.66880 -12.62245 -12.48906 -12.36540 -12.17715 -12.03376 -11.82492 -11.76685 -11.50889 -11.47595 -11.01385 -10.90261 -10.64660 -10.55184 -10.40134 -9.54204 -8.11931 -6.19847 1.40832 1.43483 1.52361 1.65902 2.11084 2.44475 2.96683 3.17791 3.48312 3.74308 3.80609 4.05920 4.07443 4.12738 4.20720 4.26668 4.33272 4.40999 4.46438 4.49863 4.54550 4.60774 4.69290 4.78625 4.81422 4.86511 4.89849 4.96808 4.98710 5.08436 5.12250 5.18471 5.23738 5.25386 5.29567 5.37616 5.53620 5.66829 5.97218 6.03577 6.04558 6.38130 6.53072 6.90089 7.19763 7.46665 8.95674 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026267 B = 0.003357 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.729838 B = 8339.455352 C = 8911.571023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.044 3.956 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.606 5.606 13 C 0.508 3.492 14 O -0.590 6.590 15 C -0.130 4.130 16 C -0.089 4.089 17 C 0.074 3.926 18 H 0.082 0.918 19 C -0.150 4.150 20 C -0.152 4.152 21 C 0.038 3.962 22 O -0.400 6.400 23 C 0.114 3.886 24 C -0.109 4.109 25 H 0.262 0.738 26 H 0.006 0.994 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -13.879 -15.311 20.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.150 4.150 11 C -0.007 4.007 12 N -0.338 5.338 13 C 0.299 3.701 14 O -0.472 6.472 15 C -0.169 4.169 16 C -0.127 4.127 17 C 0.017 3.983 18 H 0.099 0.901 19 C -0.188 4.188 20 C -0.189 4.189 21 C -0.039 4.039 22 O -0.320 6.320 23 C -0.008 4.008 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.024 0.976 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.134 -14.188 -14.966 20.859 hybrid contribution 0.451 1.226 0.297 1.340 sum -2.683 -12.962 -14.669 19.758 Atomic orbital electron populations 1.70049 1.06955 1.27267 1.50891 1.25620 0.95553 1.01941 0.94786 0.85743 0.78869 0.80117 0.78121 1.20078 1.21028 1.19751 1.21505 0.94005 0.92599 1.49272 0.93514 1.18614 0.93729 0.91955 0.93173 1.21841 0.98256 0.94341 1.00593 1.21565 0.96465 0.98287 0.84391 1.48297 1.46539 1.22273 1.16645 1.21295 0.81128 0.80853 0.86842 1.90611 1.40984 1.35860 1.79715 1.21665 1.02068 1.01472 0.91738 1.21302 1.00398 0.97075 0.93929 1.23304 0.80801 0.98788 0.95400 0.90065 1.23206 0.99525 0.98075 0.97978 1.22936 0.94311 1.02175 0.99507 1.23319 0.97352 0.98352 0.84873 1.88877 1.20991 1.88176 1.33943 1.21808 0.92105 0.84850 1.02033 1.21647 0.98790 0.95732 0.98610 0.92924 0.97568 0.92017 0.93780 0.91590 0.90196 0.87394 0.87702 0.92041 0.89975 0.90895 0.88682 0.89630 0.89296 0.91664 0.89456 0.87898 0.91766 0.92019 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.00 12.16 21.45 0.26 -50.74 16 2 C 0.02 1.10 5.19 84.65 0.44 1.54 16 3 Si 0.95 42.81 29.55 68.60 2.03 44.84 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.54 -28.96 8.48 25.60 0.22 -28.74 16 8 H 0.05 2.54 7.77 -2.91 -0.02 2.51 16 9 C 0.04 2.12 1.93 -11.51 -0.02 2.09 16 10 C -0.11 -4.66 5.30 30.67 0.16 -4.50 16 11 C 0.12 4.27 6.43 86.36 0.56 4.82 16 12 N -0.61 -21.31 2.98 -819.75 -2.44 -23.75 16 13 C 0.51 17.08 7.70 87.66 0.67 17.76 16 14 O -0.59 -23.21 15.39 -3.04 -0.05 -23.25 16 15 C -0.13 -3.27 3.97 29.85 0.12 -3.16 16 16 C -0.09 -2.05 4.29 30.60 0.13 -1.92 16 17 C 0.07 1.39 3.32 31.36 0.10 1.49 16 18 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 19 C -0.15 -2.16 6.61 31.97 0.21 -1.95 16 20 C -0.15 -1.76 7.00 31.58 0.22 -1.54 16 21 C 0.04 0.57 7.70 72.35 0.56 1.12 16 22 O -0.40 -8.76 10.89 -148.98 -1.62 -10.39 16 23 C 0.11 3.91 6.31 86.22 0.54 4.45 16 24 C -0.11 -4.70 5.19 30.53 0.16 -4.54 16 25 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.01 0.33 8.09 -2.39 -0.02 0.31 16 27 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.94 7.00 -2.39 -0.02 2.92 16 31 H 0.11 2.39 7.68 -2.39 -0.02 2.37 16 32 H 0.10 2.53 7.73 -2.39 -0.02 2.51 16 33 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.07 1.14 8.06 -2.39 -0.02 1.12 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 2.84 5.93 -2.39 -0.01 2.83 16 42 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.06 2.96 6.87 -2.39 -0.02 2.94 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -63.89 344.94 3.20 -60.69 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.95 Total: 15.67 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.07 Total: -13.07 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -2.18 Total: -74.49 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -1.67 Total: -33.64 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -63.89 3.20 -60.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397227311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.211 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds