Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48500 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47443 * 299.99783 * 3 2 1 6 6 H 1.48506 * 109.47157 * 59.99822 * 3 2 1 7 7 C 1.37869 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46333 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31519 * 181.38640 * 10 9 7 12 12 N 1.46926 * 108.77758 * 305.36932 * 11 10 9 13 13 C 1.34771 * 120.63043 * 233.58075 * 12 11 10 14 14 O 1.21282 * 120.00287 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.52991 * 109.47416 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47470 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.27728 * 304.36829 * 17 16 15 19 19 C 1.54947 * 110.31310 * 182.16724 * 17 16 15 20 20 C 1.55457 * 100.98961 * 204.69369 * 19 17 16 21 21 C 1.54382 * 102.18540 * 34.03935 * 20 19 17 22 22 O 1.43233 * 107.66464 * 338.74226 * 21 20 19 23 23 C 1.46929 * 118.73756 * 53.85904 * 12 11 10 24 24 C 1.53033 * 109.46433 * 300.07435 * 9 7 2 25 25 H 0.97012 * 119.99694 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.44277 * 60.03452 * 9 7 2 27 27 H 1.08998 * 109.49596 * 61.43765 * 10 9 7 28 28 H 1.09003 * 109.49949 * 301.34028 * 10 9 7 29 29 H 1.08994 * 109.58876 * 185.57656 * 11 10 9 30 30 H 1.09004 * 109.58464 * 65.15672 * 11 10 9 31 31 H 1.09002 * 109.47155 * 59.99712 * 15 13 12 32 32 H 1.09002 * 109.46922 * 300.00611 * 15 13 12 33 33 H 1.09010 * 109.47027 * 59.99904 * 16 15 13 34 34 H 1.09002 * 109.47466 * 300.00146 * 16 15 13 35 35 H 1.08999 * 111.12360 * 322.55868 * 19 17 16 36 36 H 1.09001 * 111.12353 * 86.68173 * 19 17 16 37 37 H 1.08994 * 110.83103 * 275.89000 * 20 19 17 38 38 H 1.08999 * 110.92148 * 152.22878 * 20 19 17 39 39 H 1.09002 * 109.83024 * 219.18066 * 21 20 19 40 40 H 1.08996 * 109.83002 * 98.29659 * 21 20 19 41 41 H 1.08999 * 109.58711 * 65.92261 * 23 12 11 42 42 H 1.09000 * 109.58675 * 186.35395 * 23 12 11 43 43 H 1.09007 * 109.49735 * 298.56086 * 24 9 7 44 44 H 1.08999 * 109.50118 * 58.65360 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2457 -3.6621 0.0015 11 6 1.4767 -4.9866 -0.0323 12 7 0.5230 -5.0084 1.0852 13 6 0.5126 -6.0343 1.9591 14 8 1.2958 -6.9510 1.8276 15 6 -0.4713 -6.0418 3.1006 16 6 -0.2729 -7.3077 3.9366 17 6 -1.2714 -7.3151 5.0958 18 1 -1.1717 -6.4042 5.6860 19 6 -1.0513 -8.5631 5.9873 20 6 -2.4599 -8.7240 6.6249 21 6 -3.3892 -8.2557 5.4845 22 8 -2.6128 -7.4420 4.5976 23 6 -0.4233 -3.8935 1.2282 24 6 0.3703 -2.5784 1.2507 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5572 -0.8885 27 1 2.8562 -3.6189 0.9034 28 1 2.8877 -3.5917 -0.8767 29 1 2.1751 -5.8174 0.0671 30 1 0.9366 -5.0715 -0.9753 31 1 -1.4868 -6.0226 2.7050 32 1 -0.3085 -5.1643 3.7264 33 1 0.7427 -7.3265 4.3322 34 1 -0.4354 -8.1855 3.3110 35 1 -0.7916 -9.4345 5.3862 36 1 -0.2939 -8.3737 6.7480 37 1 -2.5652 -8.0821 7.4995 38 1 -2.6546 -9.7654 6.8811 39 1 -4.2135 -7.6725 5.8951 40 1 -3.7795 -9.1199 4.9471 41 1 -1.1151 -3.8911 0.3859 42 1 -0.9787 -4.0029 2.1596 43 1 0.9981 -2.5452 2.1412 44 1 -0.3221 -1.7367 1.2617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397227313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = -106.042030 kcal Electronic energy + Delta-G solvation = -22475.853009 eV Core-core repulsion = 19199.013383 eV Total energy + Delta-G solvation = -3276.839626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 5.70 seconds Orbital eigenvalues (eV) -39.89884 -39.31897 -36.79821 -33.61844 -33.44223 -32.29771 -31.25553 -30.06779 -28.63659 -26.21235 -24.42201 -22.77679 -22.21137 -21.81100 -20.97690 -19.63762 -18.15440 -17.10787 -16.93331 -16.22217 -15.80567 -15.38641 -15.20794 -14.71165 -14.53200 -13.91767 -13.36200 -13.27763 -13.22986 -13.04358 -12.70067 -12.60295 -12.15074 -11.98494 -11.80174 -11.62078 -11.55536 -11.26995 -11.05387 -10.98831 -10.92239 -10.82476 -10.60155 -10.35991 -10.09151 -9.65574 -9.63608 -9.31366 -9.15314 -8.89550 -8.37954 -7.94613 -6.03073 -4.09142 3.07499 3.27072 3.35646 3.39785 3.53674 3.64461 4.24988 4.40938 4.49370 4.64407 4.87028 4.94012 4.98887 5.24890 5.26191 5.27761 5.41522 5.46995 5.49930 5.59197 5.60960 5.70379 5.83526 5.84897 5.86187 6.00267 6.10223 6.15756 6.18830 6.26425 6.32027 6.48759 6.68586 6.89550 6.92429 7.05988 7.17526 7.29992 7.67387 7.92661 7.99504 8.05064 8.40661 8.63993 8.94566 9.56017 11.02368 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003350 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.568624 B = 8355.492443 C = 8920.497116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.601 5.601 13 C 0.510 3.490 14 O -0.564 6.564 15 C -0.136 4.136 16 C -0.099 4.099 17 C 0.079 3.921 18 H 0.073 0.927 19 C -0.152 4.152 20 C -0.157 4.157 21 C 0.050 3.950 22 O -0.378 6.378 23 C 0.102 3.898 24 C -0.123 4.123 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 -14.253 11.145 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.299 3.701 14 O -0.445 6.445 15 C -0.176 4.176 16 C -0.137 4.137 17 C 0.022 3.978 18 H 0.090 0.910 19 C -0.190 4.190 20 C -0.195 4.195 21 C -0.026 4.026 22 O -0.298 6.298 23 C -0.020 4.020 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.660 -14.493 10.872 18.981 hybrid contribution 0.385 1.021 0.225 1.114 sum -5.275 -13.473 11.096 18.234 Atomic orbital electron populations 1.69852 1.05829 1.26327 1.51055 1.24963 0.94878 0.99059 0.95125 0.86564 0.80185 0.83864 0.77551 1.19856 1.21058 1.21068 1.21248 0.92976 0.90580 1.50086 0.92680 1.18641 0.92671 0.91731 0.94028 1.22000 0.98895 0.94302 1.00892 1.21675 0.91842 0.99607 0.87995 1.48265 1.35824 1.21299 1.27933 1.20639 0.84553 0.81622 0.83307 1.90617 1.42100 1.36425 1.75322 1.21619 0.99992 0.99819 0.96157 1.21474 0.98222 0.98222 0.95778 1.23085 0.82708 0.97459 0.94566 0.90962 1.23330 0.97278 0.98937 0.99417 1.23145 0.95092 1.02480 0.98740 1.23082 0.94307 0.94662 0.90588 1.88447 1.21935 1.71067 1.48326 1.22146 0.91526 0.87523 1.00835 1.22091 0.99970 0.94620 0.99499 0.93046 0.95474 0.93029 0.92229 0.90440 0.92359 0.88505 0.89081 0.90032 0.90603 0.90116 0.89849 0.90587 0.90153 0.91595 0.91521 0.91958 0.91256 0.94270 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 11.31 55.43 0.63 -23.82 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.14 2.06 -91.74 -0.19 0.95 16 10 C -0.12 -2.56 5.30 -26.61 -0.14 -2.70 16 11 C 0.11 2.10 6.43 -3.71 -0.02 2.07 16 12 N -0.60 -11.09 2.97 -172.50 -0.51 -11.60 16 13 C 0.51 9.07 7.70 -10.99 -0.08 8.98 16 14 O -0.56 -11.46 15.40 5.56 0.09 -11.38 16 15 C -0.14 -1.90 3.96 -27.89 -0.11 -2.01 16 16 C -0.10 -1.23 4.25 -26.74 -0.11 -1.34 16 17 C 0.08 0.83 3.43 -25.71 -0.09 0.74 16 18 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 19 C -0.15 -1.25 6.57 -24.40 -0.16 -1.41 16 20 C -0.16 -1.11 7.03 -24.70 -0.17 -1.28 16 21 C 0.05 0.44 7.79 37.88 0.30 0.74 16 22 O -0.38 -4.54 10.69 -35.23 -0.38 -4.91 16 23 C 0.10 1.85 6.37 -3.48 -0.02 1.82 16 24 C -0.12 -2.72 5.17 -26.39 -0.14 -2.86 16 25 H 0.26 6.81 8.31 -40.81 -0.34 6.47 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.46 7.00 -51.93 -0.36 1.10 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.10 1.32 7.70 -51.93 -0.40 0.92 16 32 H 0.09 1.18 7.70 -51.93 -0.40 0.78 16 33 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.60 16 35 H 0.08 0.67 8.06 -51.93 -0.42 0.26 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.07 1.08 5.93 -51.93 -0.31 0.77 16 43 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 2.55 6.03 -51.93 -0.31 2.23 16 LS Contribution 343.52 15.07 5.18 5.18 Total: -1.00 -29.77 343.52 -9.02 -38.78 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.66 Total: 0.60 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.34 Total: -8.70 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.11 Total: -35.42 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.29 Total: -16.29 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.77 -9.02 -38.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397227313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.258 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.70 seconds