Wall clock time and date at job start Tue Mar 31 2020 06:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48500 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47443 * 299.99783 * 3 2 1 6 6 H 1.48506 * 109.47157 * 59.99822 * 3 2 1 7 7 C 1.37869 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46333 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31519 * 181.38640 * 10 9 7 12 12 N 1.46926 * 108.77758 * 305.36932 * 11 10 9 13 13 C 1.34771 * 120.63043 * 233.58075 * 12 11 10 14 14 O 1.21282 * 120.00287 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.52991 * 109.47416 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47470 * 179.97438 * 16 15 13 18 18 H 1.08998 * 110.27728 * 304.36829 * 17 16 15 19 19 C 1.54947 * 110.31310 * 182.16724 * 17 16 15 20 20 C 1.55457 * 100.98961 * 204.69369 * 19 17 16 21 21 C 1.54382 * 102.18540 * 34.03935 * 20 19 17 22 22 O 1.43233 * 107.66464 * 338.74226 * 21 20 19 23 23 C 1.46929 * 118.73756 * 53.85904 * 12 11 10 24 24 C 1.53033 * 109.46433 * 300.07435 * 9 7 2 25 25 H 0.97012 * 119.99694 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.44277 * 60.03452 * 9 7 2 27 27 H 1.08998 * 109.49596 * 61.43765 * 10 9 7 28 28 H 1.09003 * 109.49949 * 301.34028 * 10 9 7 29 29 H 1.08994 * 109.58876 * 185.57656 * 11 10 9 30 30 H 1.09004 * 109.58464 * 65.15672 * 11 10 9 31 31 H 1.09002 * 109.47155 * 59.99712 * 15 13 12 32 32 H 1.09002 * 109.46922 * 300.00611 * 15 13 12 33 33 H 1.09010 * 109.47027 * 59.99904 * 16 15 13 34 34 H 1.09002 * 109.47466 * 300.00146 * 16 15 13 35 35 H 1.08999 * 111.12360 * 322.55868 * 19 17 16 36 36 H 1.09001 * 111.12353 * 86.68173 * 19 17 16 37 37 H 1.08994 * 110.83103 * 275.89000 * 20 19 17 38 38 H 1.08999 * 110.92148 * 152.22878 * 20 19 17 39 39 H 1.09002 * 109.83024 * 219.18066 * 21 20 19 40 40 H 1.08996 * 109.83002 * 98.29659 * 21 20 19 41 41 H 1.08999 * 109.58711 * 65.92261 * 23 12 11 42 42 H 1.09000 * 109.58675 * 186.35395 * 23 12 11 43 43 H 1.09007 * 109.49735 * 298.56086 * 24 9 7 44 44 H 1.08999 * 109.50118 * 58.65360 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2457 -3.6621 0.0015 11 6 1.4767 -4.9866 -0.0323 12 7 0.5230 -5.0084 1.0852 13 6 0.5126 -6.0343 1.9591 14 8 1.2958 -6.9510 1.8276 15 6 -0.4713 -6.0418 3.1006 16 6 -0.2729 -7.3077 3.9366 17 6 -1.2714 -7.3151 5.0958 18 1 -1.1717 -6.4042 5.6860 19 6 -1.0513 -8.5631 5.9873 20 6 -2.4599 -8.7240 6.6249 21 6 -3.3892 -8.2557 5.4845 22 8 -2.6128 -7.4420 4.5976 23 6 -0.4233 -3.8935 1.2282 24 6 0.3703 -2.5784 1.2507 25 1 -0.4850 0.8402 -0.0004 26 1 0.6246 -2.5572 -0.8885 27 1 2.8562 -3.6189 0.9034 28 1 2.8877 -3.5917 -0.8767 29 1 2.1751 -5.8174 0.0671 30 1 0.9366 -5.0715 -0.9753 31 1 -1.4868 -6.0226 2.7050 32 1 -0.3085 -5.1643 3.7264 33 1 0.7427 -7.3265 4.3322 34 1 -0.4354 -8.1855 3.3110 35 1 -0.7916 -9.4345 5.3862 36 1 -0.2939 -8.3737 6.7480 37 1 -2.5652 -8.0821 7.4995 38 1 -2.6546 -9.7654 6.8811 39 1 -4.2135 -7.6725 5.8951 40 1 -3.7795 -9.1199 4.9471 41 1 -1.1151 -3.8911 0.3859 42 1 -0.9787 -4.0029 2.1596 43 1 0.9981 -2.5452 2.1412 44 1 -0.3221 -1.7367 1.2617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397227313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:30 Heat of formation + Delta-G solvation = -122.499979 kcal Electronic energy + Delta-G solvation = -22476.566679 eV Core-core repulsion = 19199.013383 eV Total energy + Delta-G solvation = -3277.553296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18856 -40.26017 -38.42418 -35.32014 -34.64810 -33.10426 -32.87590 -31.70378 -29.63041 -27.95326 -25.62618 -24.38536 -23.72669 -22.49876 -21.94017 -21.20042 -19.67139 -18.59126 -17.94520 -17.82433 -16.90565 -16.57864 -16.48802 -16.43731 -15.60190 -14.98719 -14.91177 -14.78456 -14.44103 -14.32554 -14.11780 -13.95881 -13.56647 -13.30566 -13.09943 -12.82664 -12.74198 -12.62784 -12.43108 -12.32121 -12.14067 -12.00878 -11.81732 -11.73385 -11.64438 -11.47525 -11.00159 -10.94343 -10.63879 -10.40864 -10.38733 -9.52906 -8.07560 -6.20839 1.40454 1.43738 1.53752 1.66248 2.12557 2.44419 2.91967 3.18874 3.49291 3.66568 3.83321 4.04441 4.07913 4.14648 4.23180 4.27419 4.32983 4.40788 4.47745 4.50666 4.55285 4.61179 4.69670 4.80212 4.85744 4.86293 4.88861 4.95953 4.98884 5.03798 5.12872 5.19124 5.24036 5.26560 5.33693 5.44008 5.56737 5.66232 5.98998 6.14139 6.16434 6.39545 6.54078 6.88699 7.20263 7.46923 8.95979 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003350 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.568624 B = 8355.492443 C = 8920.497116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.606 5.606 13 C 0.507 3.493 14 O -0.591 6.591 15 C -0.129 4.129 16 C -0.094 4.094 17 C 0.078 3.922 18 H 0.081 0.919 19 C -0.151 4.151 20 C -0.149 4.149 21 C 0.041 3.959 22 O -0.405 6.405 23 C 0.113 3.887 24 C -0.114 4.114 25 H 0.262 0.738 26 H 0.002 0.998 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.030 0.970 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -14.754 12.595 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.338 5.338 13 C 0.298 3.702 14 O -0.473 6.473 15 C -0.169 4.169 16 C -0.132 4.132 17 C 0.021 3.979 18 H 0.098 0.902 19 C -0.189 4.189 20 C -0.187 4.187 21 C -0.036 4.036 22 O -0.325 6.325 23 C -0.009 4.009 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.049 0.951 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.166 -15.001 12.328 20.373 hybrid contribution 0.544 1.168 -0.261 1.314 sum -5.622 -13.834 12.067 19.199 Atomic orbital electron populations 1.69959 1.06791 1.27069 1.51264 1.25637 0.95713 1.01955 0.94862 0.85641 0.78966 0.80200 0.77628 1.19740 1.20704 1.20512 1.21561 0.92865 0.92249 1.50518 0.93539 1.18615 0.93058 0.91924 0.93794 1.21843 0.98295 0.94355 1.00564 1.21565 0.92050 0.98213 0.88864 1.48332 1.35771 1.21656 1.28040 1.21307 0.84629 0.80721 0.83548 1.90604 1.43378 1.37332 1.75960 1.21656 0.98976 1.01280 0.94971 1.21419 0.98933 0.96724 0.96081 1.23101 0.81861 0.98997 0.93936 0.90163 1.23337 0.98519 0.97634 0.99370 1.23142 0.93580 1.03686 0.98270 1.23283 0.94627 0.94692 0.90967 1.88408 1.22638 1.71766 1.49714 1.22014 0.90881 0.85329 1.02642 1.21864 0.99322 0.96092 0.98039 0.92913 0.97958 0.93960 0.91912 0.90252 0.91473 0.87753 0.87609 0.90184 0.92100 0.90536 0.88398 0.89531 0.88562 0.90778 0.91193 0.91712 0.88131 0.95134 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.32 11.31 21.44 0.24 -50.07 16 2 C 0.02 0.93 5.30 84.65 0.45 1.38 16 3 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -28.92 8.56 25.60 0.22 -28.70 16 8 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 9 C 0.04 2.16 2.06 -11.52 -0.02 2.14 16 10 C -0.11 -4.70 5.30 30.67 0.16 -4.54 16 11 C 0.12 4.30 6.43 86.36 0.56 4.86 16 12 N -0.61 -21.73 2.97 -818.07 -2.43 -24.15 16 13 C 0.51 17.42 7.70 87.66 0.67 18.10 16 14 O -0.59 -23.57 15.40 -3.04 -0.05 -23.62 16 15 C -0.13 -3.37 3.96 29.85 0.12 -3.25 16 16 C -0.09 -2.20 4.25 30.59 0.13 -2.07 16 17 C 0.08 1.49 3.43 31.26 0.11 1.60 16 18 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 19 C -0.15 -2.15 6.57 32.11 0.21 -1.94 16 20 C -0.15 -1.71 7.03 31.91 0.22 -1.49 16 21 C 0.04 0.63 7.79 72.45 0.56 1.20 16 22 O -0.40 -9.05 10.69 -148.98 -1.59 -10.64 16 23 C 0.11 3.98 6.37 86.51 0.55 4.53 16 24 C -0.11 -5.07 5.17 30.81 0.16 -4.91 16 25 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 26 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.08 2.94 7.00 -2.39 -0.02 2.93 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.10 2.61 7.70 -2.39 -0.02 2.59 16 32 H 0.11 2.48 7.70 -2.39 -0.02 2.46 16 33 H 0.08 1.89 8.10 -2.38 -0.02 1.87 16 34 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.10 2.90 5.93 -2.39 -0.01 2.89 16 43 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 Total: -1.00 -63.50 343.52 3.26 -60.24 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.95 Total: 16.46 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.10 Total: -13.10 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -2.18 Total: -74.23 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -1.64 Total: -34.26 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -63.50 3.26 -60.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397227313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.263 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds