Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48500 * 109.46936 * 274.98906 * 3 2 1 5 5 H 1.48496 * 109.46985 * 34.99142 * 3 2 1 6 6 H 1.48494 * 109.47006 * 154.99031 * 3 2 1 7 7 C 1.37883 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00187 * 189.58018 * 7 2 1 9 9 C 1.50694 * 119.99672 * 9.58177 * 7 2 1 10 10 H 1.09004 * 109.50297 * 305.38256 * 9 7 2 11 11 C 1.53041 * 109.49903 * 65.44790 * 9 7 2 12 12 C 1.53041 * 109.54004 * 181.31310 * 11 9 7 13 13 C 1.53188 * 109.31284 * 298.63758 * 12 11 9 14 14 N 1.46922 * 108.77762 * 54.63224 * 13 12 11 15 15 C 1.34780 * 120.62742 * 126.36855 * 14 13 12 16 16 O 1.21281 * 119.99268 * 179.97438 * 15 14 13 17 17 C 1.50693 * 120.00224 * 0.02562 * 15 14 13 18 18 C 1.53003 * 109.46923 * 180.02562 * 17 15 14 19 19 C 1.53006 * 109.47040 * 179.97438 * 18 17 15 20 20 H 1.08997 * 110.54954 * 56.41788 * 19 18 17 21 21 C 1.55219 * 110.64285 * 179.36538 * 19 18 17 22 22 C 1.54812 * 101.98720 * 155.43601 * 21 19 18 23 23 C 1.54098 * 104.30259 * 339.26038 * 22 21 19 24 24 O 1.43740 * 107.29716 * 357.90632 * 23 22 21 25 25 C 1.46926 * 118.73795 * 306.64312 * 14 13 12 26 26 H 0.97001 * 119.99635 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46022 * 61.29361 * 11 9 7 28 28 H 1.09002 * 109.46069 * 301.33274 * 11 9 7 29 29 H 1.09004 * 109.50116 * 178.67943 * 12 11 9 30 30 H 1.09004 * 109.52154 * 58.60389 * 12 11 9 31 31 H 1.09007 * 109.58456 * 294.84057 * 13 12 11 32 32 H 1.09000 * 109.58509 * 174.42247 * 13 12 11 33 33 H 1.08995 * 109.47841 * 59.99558 * 17 15 14 34 34 H 1.09001 * 109.46649 * 299.99493 * 17 15 14 35 35 H 1.08997 * 109.47193 * 59.99606 * 18 17 15 36 36 H 1.09001 * 109.46901 * 299.99163 * 18 17 15 37 37 H 1.08991 * 110.89426 * 37.30440 * 21 19 18 38 38 H 1.09003 * 111.02316 * 273.62848 * 21 19 18 39 39 H 1.09001 * 110.48888 * 220.51731 * 22 21 19 40 40 H 1.08999 * 110.48832 * 98.00028 * 22 21 19 41 41 H 1.09003 * 109.88033 * 117.32995 * 23 22 21 42 42 H 1.08998 * 109.88270 * 238.32480 * 23 22 21 43 43 H 1.08997 * 109.58206 * 173.14569 * 25 14 13 44 44 H 1.08995 * 109.58466 * 293.56995 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5954 1.4121 0.5919 7 6 2.0046 -1.1941 0.0005 8 1 3.0733 -1.2005 0.1562 9 6 1.2669 -2.4901 -0.2161 10 1 0.4563 -2.5729 0.5080 11 6 0.6905 -2.5190 -1.6335 12 6 -0.0867 -3.8206 -1.8436 13 6 0.8651 -5.0103 -1.6844 14 7 1.5331 -4.9102 -0.3796 15 6 1.5030 -5.9411 0.4881 16 8 2.0587 -5.8462 1.5619 17 6 0.7799 -7.2120 0.1235 18 6 0.8971 -8.2135 1.2743 19 6 0.1623 -9.5036 0.9044 20 1 0.5515 -9.9116 -0.0284 21 6 0.2777 -10.5463 2.0484 22 6 -0.9710 -11.4287 1.8064 23 6 -1.9073 -10.5406 0.9641 24 8 -1.2585 -9.2682 0.8026 25 6 2.2293 -3.6627 -0.0363 26 1 -0.4849 0.8401 -0.0004 27 1 1.5033 -2.4606 -2.3574 28 1 0.0207 -1.6700 -1.7706 29 1 -0.5166 -3.8300 -2.8452 30 1 -0.8848 -3.8916 -1.1046 31 1 1.6108 -4.9906 -2.4792 32 1 0.2990 -5.9404 -1.7347 33 1 1.2243 -7.6378 -0.7760 34 1 -0.2717 -6.9916 -0.0602 35 1 0.4522 -7.7874 2.1735 36 1 1.9486 -8.4338 1.4584 37 1 0.2280 -10.0610 3.0231 38 1 1.1922 -11.1318 1.9531 39 1 -1.4430 -11.6900 2.7535 40 1 -0.7008 -12.3291 1.2547 41 1 -2.0739 -10.9981 -0.0112 42 1 -2.8588 -10.4113 1.4799 43 1 2.5630 -3.7041 1.0005 44 1 3.0884 -3.5309 -0.6939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -106.348266 kcal Electronic energy + Delta-G solvation = -22506.429600 eV Core-core repulsion = 19229.576694 eV Total energy + Delta-G solvation = -3276.852906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -39.86142 -39.28597 -36.79159 -33.67093 -33.28224 -32.26459 -31.36215 -30.30994 -28.61030 -25.33567 -24.91155 -23.54367 -21.74655 -21.59742 -21.15086 -19.66650 -18.15728 -16.91019 -16.85786 -16.21034 -15.76423 -15.47113 -15.13269 -14.91357 -14.46016 -13.87087 -13.51210 -13.37840 -13.18556 -13.01676 -12.68502 -12.56664 -12.04050 -11.98517 -11.95347 -11.71014 -11.62942 -11.08782 -10.98074 -10.90093 -10.85894 -10.78635 -10.70445 -10.28706 -10.02722 -9.81327 -9.70785 -9.47357 -9.20728 -8.81658 -8.33990 -7.84973 -6.02873 -4.05100 3.13793 3.31000 3.38376 3.41674 3.60176 3.68654 4.33000 4.44541 4.48283 4.66285 4.82777 4.90139 5.00029 5.22557 5.25865 5.29506 5.38330 5.43068 5.47977 5.49859 5.56854 5.64679 5.71673 5.74397 5.81912 5.84857 6.08661 6.14347 6.27007 6.33965 6.43091 6.48300 6.67941 6.76954 6.82763 7.01694 7.16076 7.28403 7.70074 7.91975 8.00148 8.07514 8.38969 8.72612 8.99008 9.58289 11.06174 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.003249 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.276454 B = 8615.369398 C = 8839.237276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.037 3.963 10 H 0.036 0.964 11 C -0.105 4.105 12 C -0.136 4.136 13 C 0.110 3.890 14 N -0.605 5.605 15 C 0.508 3.492 16 O -0.554 6.554 17 C -0.137 4.137 18 C -0.096 4.096 19 C 0.075 3.925 20 H 0.070 0.930 21 C -0.151 4.151 22 C -0.157 4.157 23 C 0.046 3.954 24 O -0.371 6.371 25 C 0.118 3.882 26 H 0.260 0.740 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 -21.119 -2.355 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.018 3.982 10 H 0.054 0.946 11 C -0.144 4.144 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.337 5.337 15 C 0.296 3.704 16 O -0.433 6.433 17 C -0.177 4.177 18 C -0.134 4.134 19 C 0.018 3.982 20 H 0.088 0.912 21 C -0.188 4.188 22 C -0.195 4.195 23 C -0.031 4.031 24 O -0.291 6.291 25 C -0.003 4.003 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.133 -20.734 -1.827 20.924 hybrid contribution 0.355 0.753 -0.185 0.853 sum -1.777 -19.981 -2.012 20.161 Atomic orbital electron populations 1.69981 1.05951 1.26544 1.49941 1.24939 0.94762 0.99067 0.94889 0.86622 0.80099 0.83632 0.77935 1.20713 1.21311 1.19818 1.21050 0.94161 0.90648 1.49661 0.92475 1.18907 0.94544 0.91295 0.93431 0.94584 1.21558 0.98597 0.95000 0.99210 1.21996 0.98310 0.96530 1.00571 1.21722 0.95635 0.99192 0.84798 1.48328 1.53266 1.15346 1.16775 1.20581 0.80667 0.85009 0.84143 1.90648 1.46913 1.82597 1.23191 1.21632 1.02290 0.93871 0.99860 1.21377 1.00577 0.92616 0.98799 1.23281 0.82168 0.95542 0.97207 0.91247 1.23202 0.98204 0.97267 1.00161 1.22937 0.96479 0.99034 1.01043 1.23109 0.96631 0.84476 0.98875 1.88929 1.18059 1.28289 1.93798 1.21878 0.95280 0.82311 1.00870 0.93008 0.94330 0.90587 0.92449 0.92172 0.92003 0.90904 0.89558 0.88486 0.90233 0.89878 0.90132 0.90177 0.90586 0.90854 0.92589 0.90011 0.90272 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.48 12.17 55.43 0.67 -24.81 16 2 C 0.07 1.82 5.19 -17.82 -0.09 1.72 16 3 Si 0.89 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.20 8.48 -34.44 -0.29 -14.49 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.15 16 9 C 0.04 0.93 2.10 -91.88 -0.19 0.74 16 10 H 0.04 1.03 8.09 -51.93 -0.42 0.61 16 11 C -0.11 -2.36 5.02 -26.69 -0.13 -2.49 16 12 C -0.14 -2.43 6.08 -26.61 -0.16 -2.59 16 13 C 0.11 1.71 6.34 -3.71 -0.02 1.69 16 14 N -0.61 -11.42 2.98 -173.04 -0.52 -11.93 16 15 C 0.51 9.33 7.70 -10.99 -0.08 9.24 16 16 O -0.55 -12.12 15.40 5.56 0.09 -12.03 16 17 C -0.14 -1.84 3.96 -27.88 -0.11 -1.95 16 18 C -0.10 -1.20 4.28 -26.73 -0.11 -1.31 16 19 C 0.08 0.77 3.33 -25.55 -0.09 0.69 16 20 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 21 C -0.15 -1.26 6.61 -24.60 -0.16 -1.42 16 22 C -0.16 -1.12 7.00 -25.20 -0.18 -1.30 16 23 C 0.05 0.40 7.70 37.73 0.29 0.69 16 24 O -0.37 -4.45 10.89 -35.23 -0.38 -4.83 16 25 C 0.12 2.60 5.63 -3.93 -0.02 2.58 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.91 6.88 -51.93 -0.36 1.56 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.92 5.93 -51.93 -0.31 0.61 16 33 H 0.09 0.96 7.94 -51.93 -0.41 0.54 16 34 H 0.10 1.31 7.47 -51.93 -0.39 0.93 16 35 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 36 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.90 7.01 -51.93 -0.36 1.54 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -31.39 344.95 -9.03 -40.42 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.70 Total: -0.10 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -1.36 Total: -8.20 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.16 Total: -36.74 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.30 Total: -16.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.39 -9.03 -40.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.927 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds