Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00247 * 2 1 4 4 H 1.48493 * 109.47377 * 274.99783 * 3 2 1 5 5 H 1.48508 * 109.46723 * 34.99607 * 3 2 1 6 6 H 1.48497 * 109.46985 * 154.99210 * 3 2 1 7 7 C 1.37874 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00451 * 189.56744 * 7 2 1 9 9 C 1.50705 * 120.00089 * 9.56796 * 7 2 1 10 10 H 1.09002 * 109.49719 * 305.51330 * 9 7 2 11 11 C 1.53045 * 109.52439 * 65.58947 * 9 7 2 12 12 C 1.53038 * 109.53585 * 181.32988 * 11 9 7 13 13 C 1.53623 * 109.24602 * 298.51366 * 12 11 9 14 14 N 1.46923 * 108.54152 * 54.85583 * 13 12 11 15 15 C 1.34783 * 120.62909 * 126.36772 * 14 13 12 16 16 O 1.21276 * 120.00327 * 179.71685 * 15 14 13 17 17 C 1.50701 * 119.99848 * 359.72318 * 15 14 13 18 18 C 1.52999 * 109.47168 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47312 * 179.97438 * 18 17 15 20 20 H 1.08995 * 109.86777 * 306.00477 * 19 18 17 21 21 C 1.54103 * 109.87949 * 184.99980 * 19 18 17 22 22 C 1.54804 * 104.18570 * 238.39761 * 21 19 18 23 23 C 1.54995 * 102.09589 * 339.11544 * 22 21 19 24 24 O 1.43739 * 110.00442 * 67.09410 * 19 18 17 25 25 C 1.46922 * 118.74079 * 306.09328 * 14 13 12 26 26 H 0.96994 * 119.99992 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.45686 * 301.35803 * 11 9 7 28 28 H 1.09003 * 109.45366 * 61.31597 * 11 9 7 29 29 H 1.09008 * 109.49514 * 58.59154 * 12 11 9 30 30 H 1.09000 * 109.49528 * 178.68263 * 12 11 9 31 31 H 1.09000 * 109.73664 * 295.11713 * 13 12 11 32 32 H 1.08998 * 109.66324 * 174.54925 * 13 12 11 33 33 H 1.09004 * 109.47322 * 59.99555 * 17 15 14 34 34 H 1.09003 * 109.46868 * 299.99759 * 17 15 14 35 35 H 1.09004 * 109.47197 * 59.99680 * 18 17 15 36 36 H 1.09003 * 109.47194 * 299.99761 * 18 17 15 37 37 H 1.08999 * 110.48535 * 357.07297 * 21 19 18 38 38 H 1.08996 * 110.48663 * 119.71836 * 21 19 18 39 39 H 1.09004 * 110.91221 * 97.31975 * 22 21 19 40 40 H 1.09007 * 110.90311 * 220.91835 * 22 21 19 41 41 H 1.08999 * 110.62215 * 278.53004 * 23 22 21 42 42 H 1.09000 * 110.75475 * 155.58568 * 23 22 21 43 43 H 1.08999 * 109.58801 * 173.64618 * 25 14 13 44 44 H 1.09001 * 109.58712 * 293.93148 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5034 2.6198 0.8030 6 1 3.5955 1.4119 0.5919 7 6 2.0045 -1.1940 -0.0005 8 1 3.0732 -1.2007 0.1549 9 6 1.2667 -2.4900 -0.2180 10 1 0.4549 -2.5722 0.5047 11 6 0.6927 -2.5200 -1.6365 12 6 -0.0846 -3.8214 -1.8466 13 6 0.8710 -5.0135 -1.6868 14 7 1.5320 -4.9104 -0.3787 15 6 1.5007 -5.9407 0.4896 16 8 2.0545 -5.8452 1.5643 17 6 0.7775 -7.2116 0.1250 18 6 0.8942 -8.2130 1.2759 19 6 0.1595 -9.5030 0.9060 20 1 -0.8665 -9.2752 0.6171 21 6 0.1636 -10.4707 2.1053 22 6 0.8606 -11.7426 1.5641 23 6 0.6854 -11.5822 0.0325 24 8 0.8374 -10.1618 -0.1769 25 6 2.2330 -3.6650 -0.0376 26 1 -0.4850 0.8400 0.0004 27 1 0.0237 -1.6707 -1.7754 28 1 1.5070 -2.4627 -2.3589 29 1 -0.8837 -3.8910 -1.1085 30 1 -0.5128 -3.8316 -2.8489 31 1 1.6208 -4.9928 -2.4778 32 1 0.3074 -5.9449 -1.7390 33 1 1.2230 -7.6381 -0.7738 34 1 -0.2738 -6.9911 -0.0601 35 1 0.4490 -7.7867 2.1749 36 1 1.9456 -8.4334 1.4605 37 1 0.7311 -10.0482 2.9344 38 1 -0.8562 -10.6974 2.4161 39 1 1.9161 -11.7534 1.8359 40 1 0.3593 -12.6425 1.9208 41 1 -0.3064 -11.9118 -0.2771 42 1 1.4570 -12.1340 -0.5044 43 1 2.5682 -3.7065 0.9987 44 1 3.0930 -3.5379 -0.6951 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -106.318430 kcal Electronic energy + Delta-G solvation = -22497.713783 eV Core-core repulsion = 19220.862171 eV Total energy + Delta-G solvation = -3276.851612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89669 -39.29232 -36.76823 -33.65780 -33.28208 -32.25981 -31.35695 -30.28034 -28.58723 -25.28789 -24.89507 -23.49165 -22.03777 -21.63855 -21.00922 -19.68641 -18.18048 -16.88621 -16.57804 -16.22936 -15.94284 -15.54866 -15.11453 -14.86094 -14.47767 -13.85078 -13.52236 -13.39647 -13.13780 -12.96002 -12.68239 -12.60584 -12.04931 -11.98852 -11.95731 -11.77593 -11.51201 -11.12959 -10.99503 -10.95290 -10.81185 -10.77538 -10.69353 -10.29741 -10.03340 -9.83820 -9.70922 -9.48133 -9.20172 -8.82408 -8.34742 -7.84382 -6.03758 -4.05809 3.14895 3.30594 3.37926 3.41370 3.60645 3.68322 4.33861 4.44289 4.50711 4.68126 4.77806 4.96259 5.00692 5.20542 5.25160 5.29568 5.40092 5.43202 5.44310 5.54227 5.56117 5.64063 5.71138 5.76309 5.80898 5.86415 6.09742 6.13827 6.28222 6.33151 6.42281 6.47306 6.67829 6.75253 6.81551 7.01005 7.15725 7.27669 7.69140 7.91095 7.99205 8.07804 8.38509 8.73240 8.98316 9.57634 11.05348 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040368 B = 0.003184 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.444426 B = 8792.200277 C = 9080.605262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.039 3.961 10 H 0.036 0.964 11 C -0.106 4.106 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.508 3.492 16 O -0.555 6.555 17 C -0.136 4.136 18 C -0.100 4.100 19 C 0.075 3.925 20 H 0.069 0.931 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.372 6.372 25 C 0.117 3.883 26 H 0.260 0.740 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 -21.056 -1.900 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.019 3.981 10 H 0.054 0.946 11 C -0.144 4.144 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.296 3.704 16 O -0.434 6.434 17 C -0.176 4.176 18 C -0.138 4.138 19 C 0.018 3.982 20 H 0.087 0.913 21 C -0.191 4.191 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.292 6.292 25 C -0.004 4.004 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.998 -20.761 -1.504 20.911 hybrid contribution 0.180 0.903 -0.023 0.921 sum -1.817 -19.858 -1.528 19.999 Atomic orbital electron populations 1.69977 1.05953 1.26547 1.50020 1.24934 0.94766 0.99071 0.94885 0.86621 0.80108 0.83610 0.77948 1.20704 1.21314 1.19809 1.21060 0.94184 0.90676 1.49582 0.92469 1.18980 0.94457 0.91239 0.93379 0.94570 1.21562 0.98610 0.94982 0.99254 1.22069 0.98228 0.96524 1.00490 1.21814 0.95736 0.99083 0.84748 1.48327 1.53373 1.15439 1.16602 1.20598 0.80758 0.84893 0.84167 1.90644 1.47010 1.82498 1.23244 1.21640 1.01571 0.93667 1.00751 1.21533 1.02102 0.92230 0.97920 1.22843 0.96035 0.93076 0.86290 0.91340 1.23008 1.01646 0.95434 0.98990 1.23128 1.01873 0.98219 0.96135 1.23522 1.01213 0.83097 0.95291 1.88906 1.76255 1.17356 1.46647 1.21971 0.95195 0.82344 1.00889 0.93017 0.90607 0.94303 0.92222 0.92481 0.91938 0.90896 0.88752 0.89355 0.89970 0.90497 0.89997 0.90675 0.90468 0.90424 0.92372 0.89167 0.90292 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.18 55.43 0.67 -24.71 16 2 C 0.07 1.81 5.19 -17.82 -0.09 1.72 16 3 Si 0.89 21.28 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.17 8.48 -34.44 -0.29 -14.46 16 8 H 0.06 1.56 7.77 -52.49 -0.41 1.15 16 9 C 0.04 0.96 2.11 -91.65 -0.19 0.77 16 10 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 11 C -0.11 -2.36 5.02 -26.69 -0.13 -2.49 16 12 C -0.13 -2.38 6.10 -26.39 -0.16 -2.54 16 13 C 0.11 1.71 6.37 -3.49 -0.02 1.69 16 14 N -0.61 -11.47 2.97 -172.51 -0.51 -11.99 16 15 C 0.51 9.38 7.70 -10.98 -0.08 9.30 16 16 O -0.55 -12.20 15.39 5.56 0.09 -12.11 16 17 C -0.14 -1.86 3.96 -27.88 -0.11 -1.97 16 18 C -0.10 -1.26 3.99 -26.73 -0.11 -1.37 16 19 C 0.08 0.78 3.40 -26.15 -0.09 0.69 16 20 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 21 C -0.15 -1.27 6.64 -25.20 -0.17 -1.44 16 22 C -0.16 -1.14 7.15 -24.73 -0.18 -1.31 16 23 C 0.05 0.37 7.72 38.21 0.29 0.66 16 24 O -0.37 -4.26 10.85 -35.23 -0.38 -4.64 16 25 C 0.12 2.60 5.66 -3.71 -0.02 2.58 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.08 1.90 6.89 -51.93 -0.36 1.54 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.92 5.93 -51.93 -0.31 0.62 16 33 H 0.09 1.21 7.70 -51.93 -0.40 0.81 16 34 H 0.09 1.07 7.70 -51.93 -0.40 0.67 16 35 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 1.90 7.01 -51.93 -0.36 1.53 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 344.61 15.07 5.19 5.19 Total: -1.00 -31.25 344.61 -9.00 -40.25 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.68 Total: -0.07 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.36 Total: -8.19 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.16 Total: -36.70 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.30 Total: -16.75 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.25 -9.00 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.064 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds