Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00054 * 2 1 4 4 H 1.48503 * 109.46772 * 269.99765 * 3 2 1 5 5 H 1.48491 * 109.47098 * 29.99527 * 3 2 1 6 6 H 1.48501 * 109.47238 * 149.99859 * 3 2 1 7 7 C 1.37885 * 119.99836 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00309 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99546 * 180.02562 * 7 2 1 10 10 H 1.09002 * 109.49967 * 60.00213 * 9 7 2 11 11 C 1.53041 * 109.52251 * 299.91772 * 9 7 2 12 12 C 1.53045 * 109.53408 * 178.67084 * 11 9 7 13 13 C 1.53186 * 109.31590 * 61.36576 * 12 11 9 14 14 N 1.46930 * 108.77576 * 305.36535 * 13 12 11 15 15 C 1.34771 * 120.63086 * 233.58470 * 14 13 12 16 16 O 1.21277 * 120.00314 * 180.02562 * 15 14 13 17 17 C 1.50704 * 120.00049 * 0.02562 * 15 14 13 18 18 C 1.53003 * 109.47154 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46761 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.87143 * 53.99977 * 19 18 17 21 21 C 1.54106 * 109.87695 * 174.99988 * 19 18 17 22 22 C 1.54812 * 104.18489 * 121.45345 * 21 19 18 23 23 C 1.54994 * 102.09358 * 20.88229 * 22 21 19 24 24 O 1.43744 * 109.87930 * 292.83136 * 19 18 17 25 25 C 1.46929 * 118.73732 * 53.60420 * 14 13 12 26 26 H 0.96996 * 119.99793 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46292 * 298.69034 * 11 9 7 28 28 H 1.09001 * 109.46229 * 58.65513 * 11 9 7 29 29 H 1.09000 * 109.49953 * 301.41284 * 12 11 9 30 30 H 1.09000 * 109.52299 * 181.33370 * 12 11 9 31 31 H 1.08992 * 109.58914 * 185.57513 * 13 12 11 32 32 H 1.09008 * 109.58493 * 65.15247 * 13 12 11 33 33 H 1.08995 * 109.47111 * 300.00307 * 17 15 14 34 34 H 1.09002 * 109.47121 * 59.99900 * 17 15 14 35 35 H 1.08997 * 109.46974 * 300.00172 * 18 17 15 36 36 H 1.08997 * 109.47050 * 60.00495 * 18 17 15 37 37 H 1.09001 * 110.49113 * 240.13184 * 21 19 18 38 38 H 1.09004 * 110.48652 * 2.77903 * 21 19 18 39 39 H 1.09001 * 110.90484 * 139.08236 * 22 21 19 40 40 H 1.08999 * 110.90498 * 262.64543 * 22 21 19 41 41 H 1.09002 * 110.61520 * 81.47896 * 23 22 21 42 42 H 1.09004 * 110.61358 * 204.47322 * 23 22 21 43 43 H 1.08996 * 109.58283 * 186.60223 * 25 14 13 44 44 H 1.09002 * 109.58429 * 66.18405 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 1 3.8751 -0.6801 0.8910 11 6 4.0235 -0.4749 -1.2491 12 6 5.5535 -0.4456 -1.2322 13 6 6.0880 -1.8811 -1.2473 14 7 5.4863 -2.6216 -0.1299 15 6 6.2620 -3.2735 0.7588 16 8 5.7532 -3.8815 1.6765 17 6 7.7616 -3.2470 0.6120 18 6 8.3991 -4.0578 1.7421 19 6 9.9215 -4.0314 1.5927 20 1 10.2701 -3.0003 1.5339 21 6 10.5783 -4.7388 2.7940 22 6 11.4053 -5.8813 2.1558 23 6 11.5735 -5.3847 0.6972 24 8 10.3091 -4.7498 0.4096 25 6 4.0228 -2.6381 0.0000 26 1 -0.4849 0.8400 -0.0004 27 1 3.6802 -1.0035 -2.1383 28 1 3.6409 0.5457 -1.2632 29 1 5.8978 0.0613 -0.3307 30 1 5.9174 0.0873 -2.1106 31 1 7.1721 -1.8686 -1.1356 32 1 5.8211 -2.3605 -2.1892 33 1 8.0404 -3.6801 -0.3485 34 1 8.1134 -2.2164 0.6616 35 1 8.1202 -3.6242 2.7024 36 1 8.0474 -5.0883 1.6929 37 1 11.2301 -4.0507 3.3323 38 1 9.8172 -5.1449 3.4603 39 1 12.3733 -5.9818 2.6466 40 1 10.8564 -6.8225 2.1860 41 1 12.3890 -4.6647 0.6286 42 1 11.7436 -6.2243 0.0232 43 1 3.7445 -3.1251 0.9346 44 1 3.5876 -3.1793 -0.8401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -96.721137 kcal Electronic energy + Delta-G solvation = -22610.748204 eV Core-core repulsion = 19334.312762 eV Total energy + Delta-G solvation = -3276.435442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.00502 -39.41908 -37.04840 -33.75139 -33.33589 -32.31043 -31.72395 -30.61690 -28.75815 -25.55629 -24.98097 -23.66884 -22.07996 -21.65469 -21.07580 -19.80571 -18.38984 -17.00575 -16.67302 -16.61519 -16.06335 -15.66399 -15.22618 -15.06126 -14.58453 -13.89858 -13.79386 -13.56975 -13.27121 -13.05668 -12.99128 -12.53119 -12.50215 -12.17921 -12.05381 -11.87313 -11.57815 -11.39290 -11.15210 -11.10993 -11.02179 -10.83825 -10.61152 -10.30906 -10.14057 -9.89573 -9.81632 -9.53832 -9.25443 -8.98680 -8.55987 -8.03792 -6.09144 -4.08993 3.02477 3.24048 3.36052 3.38355 3.45775 3.62722 4.28794 4.38899 4.43882 4.62990 4.70713 4.86872 4.95148 5.10689 5.13956 5.22610 5.26510 5.35580 5.37295 5.39299 5.48183 5.49509 5.59058 5.65810 5.67501 5.80416 5.92687 6.00324 6.02227 6.09165 6.21068 6.23663 6.38831 6.55263 6.69470 6.71378 6.75882 6.89903 7.15922 7.47750 7.73673 7.91029 8.47808 8.60421 8.94461 9.52525 11.03953 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036913 B = 0.003423 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.367271 B = 8177.035777 C = 8396.825542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.005 3.995 10 H 0.029 0.971 11 C -0.122 4.122 12 C -0.139 4.139 13 C 0.111 3.889 14 N -0.609 5.609 15 C 0.509 3.491 16 O -0.551 6.551 17 C -0.137 4.137 18 C -0.101 4.101 19 C 0.075 3.925 20 H 0.068 0.932 21 C -0.153 4.153 22 C -0.156 4.156 23 C 0.046 3.954 24 O -0.372 6.372 25 C 0.127 3.873 26 H 0.264 0.736 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.338 -6.603 0.127 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.012 4.012 14 N -0.342 5.342 15 C 0.297 3.703 16 O -0.429 6.429 17 C -0.177 4.177 18 C -0.138 4.138 19 C 0.018 3.982 20 H 0.086 0.914 21 C -0.191 4.191 22 C -0.194 4.194 23 C -0.031 4.031 24 O -0.292 6.292 25 C 0.006 3.994 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 23.765 -6.828 0.417 24.730 hybrid contribution 0.479 1.168 0.002 1.262 sum 24.245 -5.661 0.419 24.900 Atomic orbital electron populations 1.69896 1.06266 1.26978 1.50579 1.24990 0.94686 0.99012 0.94385 0.86817 0.79923 0.83547 0.77765 1.20588 1.22527 1.19134 1.20924 0.88351 0.94724 1.51220 0.90602 1.19464 0.96814 0.91555 0.93599 0.95249 1.21986 0.92038 1.00679 1.01288 1.22007 0.98695 0.95552 1.01505 1.21688 0.97324 0.92553 0.89664 1.48351 1.08356 1.50281 1.27207 1.20616 0.89251 0.78753 0.81678 1.90661 1.75695 1.43891 1.32666 1.21651 0.92332 1.02118 1.01578 1.21540 0.91686 1.01926 0.98687 1.22838 0.95382 0.95562 0.84459 0.91361 1.23012 0.99918 0.97751 0.98410 1.23132 1.00721 0.99284 0.96238 1.23529 0.86993 0.96805 0.95794 1.88907 1.37098 1.67917 1.35244 1.21750 0.75993 0.99304 1.02351 0.92608 0.91925 0.93248 0.92171 0.91749 0.90503 0.91490 0.88609 0.89382 0.89971 0.90404 0.90680 0.89978 0.90404 0.90434 0.92341 0.89124 0.89664 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 21.93 24.39 -169.99 -4.15 17.78 16 4 H -0.28 -6.61 6.86 56.52 0.39 -6.23 16 5 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 7 C -0.51 -14.39 9.15 -34.44 -0.31 -14.71 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.88 16 9 C 0.01 0.12 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.74 7.20 -51.93 -0.37 0.36 16 11 C -0.12 -2.52 4.66 -26.69 -0.12 -2.65 16 12 C -0.14 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C 0.11 1.58 6.34 -3.71 -0.02 1.56 16 14 N -0.61 -10.80 2.97 -172.77 -0.51 -11.31 16 15 C 0.51 8.84 7.70 -10.99 -0.08 8.75 16 16 O -0.55 -11.55 15.39 5.56 0.09 -11.47 16 17 C -0.14 -1.73 3.96 -27.88 -0.11 -1.84 16 18 C -0.10 -1.19 3.99 -26.73 -0.11 -1.30 16 19 C 0.08 0.73 3.41 -26.15 -0.09 0.64 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 21 C -0.15 -1.20 6.64 -25.20 -0.17 -1.36 16 22 C -0.16 -1.07 7.15 -24.72 -0.18 -1.25 16 23 C 0.05 0.35 7.72 38.21 0.29 0.64 16 24 O -0.37 -4.04 10.84 -35.23 -0.38 -4.43 16 25 C 0.13 2.69 5.66 -3.71 -0.02 2.67 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 1.09 3.26 -51.93 -0.17 0.92 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.86 5.93 -51.93 -0.31 0.56 16 32 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.10 1.13 7.71 -51.93 -0.40 0.73 16 34 H 0.09 0.97 7.69 -51.93 -0.40 0.57 16 35 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.66 7.70 -51.93 -0.40 0.26 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.96 7.00 -51.93 -0.36 1.60 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -32.73 336.35 -7.97 -40.71 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.51 Total: -0.25 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.35 Total: -9.33 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.26 Total: -38.08 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.30 Total: -15.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.73 -7.97 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.016 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds