Wall clock time and date at job start Tue Mar 31 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48501 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47428 * 300.00376 * 3 2 1 6 6 H 1.48502 * 109.47037 * 60.00469 * 3 2 1 7 7 C 1.37870 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00145 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.49821 * 60.06591 * 9 7 2 11 11 C 1.53039 * 109.49731 * 300.00069 * 9 7 2 12 12 C 1.53040 * 109.53579 * 178.64927 * 11 9 7 13 13 C 1.53191 * 109.31454 * 61.36967 * 12 11 9 14 14 N 1.46927 * 108.77356 * 305.36260 * 13 12 11 15 15 C 1.34777 * 120.63303 * 233.58945 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.72079 * 15 14 13 18 18 C 1.53004 * 109.47208 * 180.27843 * 17 15 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 15 20 20 H 1.08996 * 109.82940 * 305.56330 * 19 18 17 21 21 C 1.54388 * 109.82811 * 184.58439 * 19 18 17 22 22 C 1.55300 * 102.25314 * 219.13098 * 21 19 18 23 23 C 1.54949 * 100.94361 * 34.13690 * 22 21 19 24 24 O 1.43240 * 109.83006 * 66.46036 * 19 18 17 25 25 C 1.46925 * 118.74028 * 53.85668 * 14 13 12 26 26 H 0.97006 * 120.00423 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46168 * 58.63300 * 11 9 7 28 28 H 1.09000 * 109.46038 * 298.66595 * 11 9 7 29 29 H 1.08993 * 109.50223 * 301.41324 * 12 11 9 30 30 H 1.09000 * 109.52315 * 181.33000 * 12 11 9 31 31 H 1.08996 * 109.59004 * 185.57535 * 13 12 11 32 32 H 1.08997 * 109.70978 * 65.21642 * 13 12 11 33 33 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 34 34 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 35 35 H 1.09000 * 109.46887 * 300.00372 * 18 17 15 36 36 H 1.08998 * 109.46846 * 59.99549 * 18 17 15 37 37 H 1.09004 * 110.84977 * 337.32668 * 21 19 18 38 38 H 1.09002 * 110.84468 * 100.94464 * 21 19 18 39 39 H 1.09002 * 111.12953 * 276.21358 * 22 21 19 40 40 H 1.09000 * 111.12277 * 152.05295 * 22 21 19 41 41 H 1.08994 * 110.31043 * 204.64034 * 23 22 21 42 42 H 1.09001 * 110.30686 * 82.46804 * 23 22 21 43 43 H 1.09005 * 109.58329 * 65.93269 * 25 14 13 44 44 H 1.09000 * 109.58776 * 186.35431 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5576 -0.8907 11 6 0.3715 -2.5811 1.2491 12 6 -0.4195 -3.8911 1.2332 13 6 0.5560 -5.0722 1.2503 14 7 1.4988 -4.9230 0.1333 15 6 1.6757 -5.9217 -0.7542 16 8 2.4566 -5.7861 -1.6722 17 6 0.9073 -7.2092 -0.6026 18 6 1.2956 -8.1704 -1.7279 19 6 0.5159 -9.4778 -1.5736 20 1 0.6716 -9.8854 -0.5748 21 6 0.9847 -10.4956 -2.6356 22 6 -0.3479 -11.1766 -3.0503 23 6 -1.3360 -9.9896 -2.9261 24 8 -0.8800 -9.2394 -1.7892 25 6 2.2496 -3.6665 0.0057 26 1 -0.4851 0.8401 0.0004 27 1 -0.3207 -1.7392 1.2619 28 1 1.0004 -2.5475 2.1387 29 1 -1.0300 -3.9366 0.3314 30 1 -1.0635 -3.9386 2.1113 31 1 0.0027 -6.0047 1.1393 32 1 1.1042 -5.0825 2.1922 33 1 1.1439 -7.6625 0.3602 34 1 -0.1617 -7.0027 -0.6540 35 1 1.0590 -7.7172 -2.6906 36 1 2.3646 -8.3770 -1.6765 37 1 1.4415 -9.9875 -3.4849 38 1 1.6722 -11.2211 -2.2007 39 1 -0.6099 -11.9796 -2.3613 40 1 -0.2998 -11.5419 -4.0762 41 1 -2.3483 -10.3561 -2.7561 42 1 -1.3018 -9.3733 -3.8245 43 1 2.9330 -3.5620 0.8485 44 1 2.8142 -3.6713 -0.9267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397664281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:59 Heat of formation + Delta-G solvation = -105.352580 kcal Electronic energy + Delta-G solvation = -22562.982639 eV Core-core repulsion = 19286.172910 eV Total energy + Delta-G solvation = -3276.809729 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.90610 -39.28388 -36.74721 -33.63409 -33.27612 -32.29149 -31.28124 -30.26429 -28.60774 -25.32499 -24.90148 -23.47784 -21.90453 -21.63091 -20.92299 -19.61596 -18.13444 -17.15592 -16.87777 -16.22745 -15.89566 -15.24306 -15.07912 -14.62494 -14.36827 -13.77600 -13.62732 -13.45567 -13.23715 -13.01148 -12.67237 -12.51062 -12.04766 -11.94822 -11.94006 -11.80797 -11.50861 -11.09740 -11.04358 -10.96885 -10.82904 -10.79707 -10.65782 -10.24030 -9.92830 -9.76649 -9.64241 -9.43317 -9.18120 -8.77879 -8.36759 -7.83047 -5.99860 -4.06893 3.15157 3.29947 3.38006 3.42247 3.59331 3.69439 4.26110 4.44029 4.52157 4.63029 4.88868 4.97241 4.98894 5.23491 5.26517 5.29808 5.41799 5.44036 5.48517 5.51424 5.61011 5.65909 5.69681 5.77440 5.85012 5.86014 6.14442 6.17691 6.29411 6.37907 6.45057 6.52623 6.70487 6.85401 6.89900 7.02768 7.21478 7.37334 7.71705 7.95516 8.08706 8.10815 8.40495 8.73672 8.97219 9.57889 11.05592 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.033659 B = 0.003289 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.679016 B = 8512.195586 C = 8700.847566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.135 4.135 13 C 0.109 3.891 14 N -0.605 5.605 15 C 0.507 3.493 16 O -0.556 6.556 17 C -0.135 4.135 18 C -0.112 4.112 19 C 0.079 3.921 20 H 0.080 0.920 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.049 3.951 24 O -0.377 6.377 25 C 0.116 3.884 26 H 0.260 0.740 27 H 0.095 0.905 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.332 -20.749 -0.638 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.295 3.705 16 O -0.436 6.436 17 C -0.175 4.175 18 C -0.150 4.150 19 C 0.022 3.978 20 H 0.098 0.902 21 C -0.189 4.189 22 C -0.195 4.195 23 C -0.027 4.027 24 O -0.296 6.296 25 C -0.005 4.005 26 H 0.069 0.931 27 H 0.113 0.887 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.185 -20.403 -0.987 20.544 hybrid contribution 0.441 0.854 -0.006 0.961 sum -1.744 -19.549 -0.993 19.652 Atomic orbital electron populations 1.69886 1.05887 1.26324 1.50691 1.24943 0.94860 0.99086 0.95003 0.86527 0.80190 0.83704 0.77527 1.19740 1.21038 1.21060 1.21129 0.93027 0.90333 1.50659 0.92461 1.19050 0.92906 0.91157 0.94791 0.95278 1.21626 0.99440 0.95429 0.98536 1.21998 0.97662 0.96679 1.00983 1.21740 0.91344 0.99160 0.89151 1.48325 1.41929 1.16221 1.27200 1.20622 0.82812 0.85237 0.81800 1.90641 1.38200 1.81979 1.32752 1.21616 1.01785 0.93774 1.00306 1.21724 0.99924 0.93878 0.99444 1.22833 0.81496 0.94759 0.98741 0.90225 1.23185 0.97930 0.98277 0.99550 1.23266 0.95146 0.98518 1.02570 1.23363 0.98102 0.91570 0.89686 1.88450 1.23703 1.69145 1.48338 1.22063 0.95000 0.82132 1.01301 0.93055 0.88662 0.94633 0.92359 0.92498 0.90975 0.92064 0.89592 0.88531 0.90706 0.90359 0.90103 0.90045 0.90495 0.90053 0.89895 0.92206 0.92844 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.31 55.43 0.63 -24.64 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.12 8.57 -34.45 -0.30 -14.41 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.04 1.01 2.26 -91.43 -0.21 0.80 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.56 4.96 -26.69 -0.13 -2.70 16 12 C -0.14 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C 0.11 1.75 6.34 -3.71 -0.02 1.72 16 14 N -0.60 -11.56 2.97 -172.50 -0.51 -12.07 16 15 C 0.51 9.42 7.70 -10.98 -0.08 9.33 16 16 O -0.56 -12.25 15.39 5.55 0.09 -12.16 16 17 C -0.13 -1.85 3.96 -27.88 -0.11 -1.96 16 18 C -0.11 -1.40 4.07 -26.73 -0.11 -1.51 16 19 C 0.08 0.81 3.52 -26.00 -0.09 0.72 16 20 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.15 -1.22 6.54 -24.78 -0.16 -1.39 16 22 C -0.16 -1.11 7.16 -24.48 -0.18 -1.29 16 23 C 0.05 0.44 7.78 38.19 0.30 0.74 16 24 O -0.38 -4.48 10.63 -35.23 -0.37 -4.85 16 25 C 0.12 2.59 5.69 -3.49 -0.02 2.57 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.10 2.46 6.04 -51.93 -0.31 2.15 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.94 5.94 -51.93 -0.31 0.63 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.98 7.94 -51.92 -0.41 0.57 16 34 H 0.10 1.33 7.43 -51.93 -0.39 0.94 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.08 1.87 7.00 -51.93 -0.36 1.50 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -31.20 343.24 -9.04 -40.24 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.65 Total: 0.37 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -1.37 Total: -8.37 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.12 Total: -36.71 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.29 Total: -17.01 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.20 -9.04 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397664281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.110 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds