Wall clock time and date at job start Tue Mar 31 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48499 * 109.47194 * 270.00011 * 3 2 1 5 5 H 1.48507 * 109.47016 * 29.99800 * 3 2 1 6 6 H 1.48498 * 109.46924 * 149.99548 * 3 2 1 7 7 C 1.37875 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00175 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99919 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.49730 * 60.07235 * 9 7 2 11 11 C 1.53036 * 109.50031 * 300.00354 * 9 7 2 12 12 C 1.53043 * 109.53620 * 178.65239 * 11 9 7 13 13 C 1.53192 * 109.31235 * 61.36579 * 12 11 9 14 14 N 1.46923 * 108.77564 * 305.36054 * 13 12 11 15 15 C 1.34777 * 120.63273 * 233.58447 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.28271 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.52994 * 109.47118 * 179.97438 * 18 17 15 20 20 H 1.09004 * 110.75415 * 57.02269 * 19 18 17 21 21 C 1.55311 * 110.84560 * 180.71181 * 19 18 17 22 22 C 1.54951 * 100.93839 * 152.32374 * 21 19 18 23 23 O 1.43637 * 105.13712 * 323.55563 * 22 21 19 24 24 C 1.43236 * 109.97424 * 24.42883 * 23 22 21 25 25 C 1.46929 * 118.73574 * 53.86561 * 14 13 12 26 26 H 0.96999 * 120.00252 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.45866 * 58.63171 * 11 9 7 28 28 H 1.09005 * 109.45879 * 298.67159 * 11 9 7 29 29 H 1.08998 * 109.49723 * 301.41379 * 12 11 9 30 30 H 1.09001 * 109.52382 * 181.33385 * 12 11 9 31 31 H 1.09003 * 109.58465 * 185.57606 * 13 12 11 32 32 H 1.08996 * 109.58389 * 65.15616 * 13 12 11 33 33 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 34 34 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 35 35 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 36 36 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 37 37 H 1.08998 * 111.12905 * 270.24165 * 21 19 18 38 38 H 1.08996 * 111.12241 * 34.40917 * 21 19 18 39 39 H 1.08999 * 110.30759 * 204.63747 * 22 21 19 40 40 H 1.09001 * 110.31010 * 82.47184 * 22 21 19 41 41 H 1.09003 * 109.83520 * 238.77876 * 24 23 22 42 42 H 1.08999 * 109.83144 * 117.80269 * 24 23 22 43 43 H 1.09007 * 109.58815 * 65.92331 * 25 14 13 44 44 H 1.08999 * 109.58776 * 186.34974 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 1 3.8757 -0.6807 0.8900 11 6 4.0219 -0.4734 -1.2500 12 6 5.5520 -0.4433 -1.2346 13 6 6.0870 -1.8787 -1.2516 14 7 5.4869 -2.6203 -0.1343 15 6 6.2638 -3.2728 0.7530 16 8 5.7561 -3.8818 1.6707 17 6 7.7634 -3.2407 0.6080 18 6 8.4026 -4.0482 1.7395 19 6 9.9251 -4.0161 1.5920 20 1 10.2909 -2.9893 1.5848 21 6 10.6068 -4.8425 2.7164 22 6 11.9180 -5.2726 2.0115 23 8 11.5475 -5.5135 0.6448 24 6 10.3696 -4.7667 0.3183 25 6 4.0233 -2.6424 -0.0062 26 1 -0.4850 0.8400 -0.0004 27 1 3.6388 0.5470 -1.2628 28 1 3.6780 -1.0014 -2.1394 29 1 5.8968 0.0629 -0.3330 30 1 5.9147 0.0906 -2.1129 31 1 7.1714 -1.8657 -1.1410 32 1 5.8195 -2.3572 -2.1936 33 1 8.0450 -3.6742 -0.3517 34 1 8.1111 -2.2088 0.6566 35 1 8.1210 -3.6147 2.6992 36 1 8.0548 -5.0800 1.6909 37 1 10.8148 -4.2227 3.5886 38 1 10.0040 -5.7093 2.9874 39 1 12.3093 -6.1839 2.4637 40 1 12.6574 -4.4737 2.0679 41 1 9.5799 -5.4445 -0.0059 42 1 10.5928 -4.0515 -0.4734 43 1 3.5909 -3.1821 -0.8488 44 1 3.7455 -3.1336 0.9263 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401316059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:19 Heat of formation + Delta-G solvation = -97.958526 kcal Electronic energy + Delta-G solvation = -22589.879315 eV Core-core repulsion = 19313.390216 eV Total energy + Delta-G solvation = -3276.489099 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -40.09376 -39.47544 -37.13540 -34.68688 -33.53855 -31.81625 -31.24634 -30.49292 -28.83801 -25.72561 -25.04149 -23.88325 -22.45504 -21.71320 -20.70370 -19.80497 -18.46464 -17.19499 -16.99517 -16.69531 -15.98333 -15.54020 -15.33139 -14.93431 -14.74895 -14.00733 -13.81423 -13.60595 -13.35308 -13.34577 -13.08934 -12.71781 -12.55413 -12.29270 -12.13172 -11.83521 -11.60539 -11.42173 -11.25387 -11.16495 -10.99615 -10.77095 -10.67012 -10.35257 -10.18170 -9.86767 -9.79921 -9.60425 -9.31728 -9.03469 -8.59284 -8.10755 -6.12074 -4.12221 2.92308 3.21146 3.33188 3.35142 3.36526 3.60784 4.14149 4.35800 4.38095 4.59487 4.72290 4.86125 4.92344 5.02265 5.05142 5.13593 5.19155 5.29532 5.30638 5.40321 5.43374 5.48201 5.51843 5.58047 5.60863 5.78274 5.85487 5.94883 5.98355 6.03075 6.13590 6.17506 6.33238 6.49778 6.65299 6.70254 6.70362 6.83379 7.10512 7.43226 7.69907 7.83005 8.44042 8.51954 8.91294 9.49387 11.00992 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.003380 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.977419 B = 8282.594598 C = 8486.977421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.123 4.123 12 C -0.139 4.139 13 C 0.111 3.889 14 N -0.609 5.609 15 C 0.508 3.492 16 O -0.548 6.548 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.123 4.123 20 H 0.086 0.914 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.388 6.388 24 C 0.052 3.948 25 C 0.127 3.873 26 H 0.264 0.736 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.559 -5.326 -0.232 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.094 0.906 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.178 4.178 13 C -0.012 4.012 14 N -0.342 5.342 15 C 0.296 3.704 16 O -0.426 6.426 17 C -0.182 4.182 18 C -0.130 4.130 19 C -0.142 4.142 20 H 0.104 0.896 21 C -0.190 4.190 22 C -0.026 4.026 23 O -0.307 6.307 24 C -0.024 4.024 25 C 0.006 3.994 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.216 -5.679 0.109 22.931 hybrid contribution 0.181 1.364 -0.069 1.378 sum 22.397 -4.315 0.040 22.809 Atomic orbital electron populations 1.69891 1.06267 1.27012 1.50474 1.24987 0.94688 0.99010 0.94370 0.86821 0.79912 0.83574 0.77761 1.20580 1.22494 1.19162 1.20918 0.88346 0.94734 1.51323 0.90600 1.19537 0.96836 0.91407 0.93581 0.95220 1.21992 0.91991 1.00738 1.01309 1.22007 0.98754 0.95474 1.01537 1.21690 0.97214 0.92661 0.89673 1.48364 1.08426 1.50106 1.27272 1.20556 0.89129 0.78922 0.81810 1.90678 1.75668 1.43776 1.32522 1.21739 0.92856 1.02575 1.01013 1.21302 0.91526 1.01404 0.98805 1.22801 0.96661 1.00126 0.94607 0.89578 1.23328 0.96483 1.00731 0.98482 1.23367 0.96429 1.00863 0.81941 1.88392 1.44935 1.69087 1.28300 1.23289 0.87555 0.94714 0.96848 1.21857 0.75847 0.99355 1.02368 0.92576 0.93207 0.91910 0.92151 0.91722 0.90616 0.91444 0.89211 0.89066 0.90539 0.90722 0.89803 0.89980 0.89848 0.92289 0.90934 0.91423 0.91995 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 21.63 24.39 -169.99 -4.15 17.49 16 4 H -0.28 -6.52 6.86 56.52 0.39 -6.13 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 7 C -0.51 -14.21 9.15 -34.44 -0.32 -14.52 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.01 0.14 1.85 -91.43 -0.17 -0.03 16 10 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 11 C -0.12 -2.46 4.66 -26.69 -0.12 -2.59 16 12 C -0.14 -2.13 6.08 -26.61 -0.16 -2.29 16 13 C 0.11 1.46 6.34 -3.71 -0.02 1.44 16 14 N -0.61 -10.19 2.97 -172.50 -0.51 -10.70 16 15 C 0.51 8.22 7.70 -10.98 -0.08 8.13 16 16 O -0.55 -11.00 15.39 5.55 0.09 -10.91 16 17 C -0.14 -1.53 3.89 -27.88 -0.11 -1.64 16 18 C -0.09 -0.95 3.89 -26.74 -0.10 -1.06 16 19 C -0.12 -1.01 3.03 -88.67 -0.27 -1.28 16 20 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -1.15 6.62 -24.48 -0.16 -1.31 16 22 C 0.05 0.39 7.78 38.19 0.30 0.69 16 23 O -0.39 -4.11 11.36 -35.23 -0.40 -4.51 16 24 C 0.05 0.46 6.57 37.88 0.25 0.71 16 25 C 0.13 2.59 5.69 -3.48 -0.02 2.57 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.74 5.93 -51.93 -0.31 0.44 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.79 7.28 -51.93 -0.38 0.41 16 34 H 0.09 0.85 7.69 -51.93 -0.40 0.45 16 35 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 36 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.65 8.04 -51.93 -0.42 0.23 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.92 7.00 -51.93 -0.36 1.55 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -32.51 335.22 -7.72 -40.23 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.48 Total: -0.92 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.09 Total: -9.24 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.26 Total: -37.18 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.31 Total: -15.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.15 Total: 17.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.51 -7.72 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401316059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.731 kcal (2) G-P(sol) polarization free energy of solvation -32.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds