Wall clock time and date at job start Tue Mar 31 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99574 * 2 1 4 4 H 1.48489 * 109.47043 * 269.99480 * 3 2 1 5 5 H 1.48496 * 109.47157 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.46658 * 149.99894 * 3 2 1 7 7 C 1.37873 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99641 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00194 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.46914 * 179.97438 * 9 7 2 11 11 C 1.53032 * 109.46007 * 295.06770 * 10 9 7 12 12 C 1.53197 * 109.31075 * 178.61637 * 11 10 9 13 13 N 1.46930 * 108.77668 * 54.63447 * 12 11 10 14 14 C 1.34771 * 120.62974 * 126.41076 * 13 12 11 15 15 O 1.21279 * 119.99891 * 179.97438 * 14 13 12 16 16 C 1.50703 * 120.00331 * 359.97438 * 14 13 12 17 17 C 1.52998 * 109.47291 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.75359 * 57.01809 * 17 16 14 19 19 C 1.55304 * 110.84779 * 180.71499 * 17 16 14 20 20 C 1.54945 * 100.94343 * 152.32460 * 19 17 16 21 21 O 1.43651 * 105.13500 * 323.55424 * 20 19 17 22 22 C 1.43237 * 109.96918 * 24.42923 * 21 20 19 23 23 C 1.46927 * 118.73677 * 306.39359 * 13 12 11 24 24 C 1.53042 * 109.45627 * 174.99618 * 10 9 7 25 25 H 0.96994 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47549 * 60.00240 * 9 7 2 27 27 H 1.09000 * 109.46862 * 299.99921 * 9 7 2 28 28 H 1.09000 * 109.45923 * 55.02694 * 10 9 7 29 29 H 1.09002 * 109.49818 * 298.56292 * 11 10 9 30 30 H 1.08994 * 109.50136 * 58.66386 * 11 10 9 31 31 H 1.08996 * 109.58455 * 294.84405 * 12 11 10 32 32 H 1.09003 * 109.70064 * 174.49247 * 12 11 10 33 33 H 1.09002 * 109.46996 * 299.99892 * 16 14 13 34 34 H 1.09002 * 109.47029 * 59.99624 * 16 14 13 35 35 H 1.09002 * 111.12242 * 270.24379 * 19 17 16 36 36 H 1.08998 * 111.12553 * 34.40252 * 19 17 16 37 37 H 1.08996 * 110.31053 * 204.64081 * 20 19 17 38 38 H 1.08999 * 110.39534 * 82.51191 * 20 19 17 39 39 H 1.08996 * 109.83097 * 238.77529 * 22 21 20 40 40 H 1.09002 * 109.82903 * 117.80020 * 22 21 20 41 41 H 1.08997 * 109.58457 * 293.82057 * 23 13 12 42 42 H 1.09000 * 109.70357 * 173.46438 * 23 13 12 43 43 H 1.08996 * 109.49952 * 301.33712 * 24 10 9 44 44 H 1.09008 * 109.49643 * 61.43586 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0047 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 6 3.6147 -3.3200 1.3096 12 6 4.0970 -4.7740 1.2925 13 7 5.5422 -4.7898 1.0276 14 6 6.3847 -5.4397 1.8547 15 8 7.5755 -5.4457 1.6249 16 6 5.8473 -6.1587 3.0652 17 6 7.0037 -6.8083 3.8277 18 1 7.7475 -6.0630 4.1097 19 6 6.4827 -7.5747 5.0740 20 6 7.5742 -8.6637 5.2272 21 8 7.9391 -9.0204 3.8844 22 6 7.6463 -7.9375 2.9938 23 6 6.0511 -4.0841 -0.1563 24 6 5.5470 -2.6379 -0.1230 25 1 -0.4850 0.8400 -0.0004 26 1 3.8747 -0.6799 0.8911 27 1 3.8753 -0.6802 -0.8889 28 1 3.5877 -3.1757 -0.8397 29 1 4.0687 -2.7961 2.1507 30 1 2.5296 -3.2978 1.4093 31 1 3.5757 -5.3226 0.5081 32 1 3.8973 -5.2388 2.2580 33 1 5.3380 -5.4466 3.7145 34 1 5.1439 -6.9286 2.7479 35 1 6.4500 -6.9255 5.9490 36 1 5.5070 -8.0207 4.8814 37 1 7.1730 -9.5301 5.7530 38 1 8.4370 -8.2645 5.7603 39 1 6.9506 -8.2700 2.2235 40 1 8.5666 -7.5788 2.5327 41 1 5.6892 -4.5765 -1.0589 42 1 7.1411 -4.0914 -0.1482 43 1 5.8370 -2.1303 -1.0429 44 1 5.9827 -2.1204 0.7317 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401336312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:58 Heat of formation + Delta-G solvation = -104.448774 kcal Electronic energy + Delta-G solvation = -22534.455696 eV Core-core repulsion = 19257.685159 eV Total energy + Delta-G solvation = -3276.770537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44902 -39.27693 -37.44544 -34.13659 -33.77427 -32.21223 -31.03409 -30.04660 -28.73393 -27.15056 -24.55848 -23.03981 -22.70957 -21.76411 -20.86672 -19.73959 -18.65363 -17.23916 -16.99408 -16.69193 -16.05684 -15.65257 -15.36255 -14.79679 -14.40304 -14.04533 -13.87714 -13.53551 -13.39185 -13.35281 -13.22028 -12.71035 -12.41366 -12.30417 -12.11521 -11.86530 -11.57973 -11.43521 -11.19773 -11.08780 -11.02563 -10.91863 -10.70920 -10.38527 -9.99271 -9.77744 -9.73751 -9.59340 -9.51831 -9.11654 -8.57988 -8.46907 -6.09025 -4.06705 2.63479 3.03772 3.27051 3.35186 3.38488 3.69988 4.12777 4.39358 4.41230 4.62544 4.64427 4.92299 4.99152 5.01744 5.12444 5.24052 5.26362 5.34717 5.36110 5.38558 5.40993 5.45030 5.57372 5.57678 5.60955 5.67733 5.86667 5.87164 5.96535 5.98608 6.22528 6.24093 6.37227 6.55574 6.74128 6.80211 6.81307 6.90406 7.19986 7.38478 7.48716 7.75121 8.19146 8.48398 8.95123 9.54195 11.04123 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.003241 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.639101 B = 8636.790176 C = 8981.758171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.120 4.120 12 C 0.102 3.898 13 N -0.606 5.606 14 C 0.512 3.488 15 O -0.550 6.550 16 C -0.131 4.131 17 C -0.105 4.105 18 H 0.093 0.907 19 C -0.154 4.154 20 C 0.051 3.949 21 O -0.390 6.390 22 C 0.062 3.938 23 C 0.112 3.888 24 C -0.132 4.132 25 H 0.263 0.737 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.753 -14.054 8.107 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.091 4.091 11 C -0.158 4.158 12 C -0.020 4.020 13 N -0.339 5.339 14 C 0.300 3.700 15 O -0.429 6.429 16 C -0.171 4.171 17 C -0.124 4.124 18 H 0.111 0.889 19 C -0.192 4.192 20 C -0.025 4.025 21 O -0.309 6.309 22 C -0.015 4.015 23 C -0.010 4.010 24 C -0.170 4.170 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.308 -14.129 7.912 20.340 hybrid contribution 0.010 1.355 -0.006 1.355 sum 12.318 -12.774 7.906 19.427 Atomic orbital electron populations 1.69909 1.06272 1.26872 1.51244 1.25027 0.94695 0.99132 0.94642 0.86812 0.80359 0.83803 0.78494 1.20362 1.21473 1.19090 1.21126 0.89392 0.94319 1.50625 0.90850 1.19618 0.97186 0.91626 0.96237 1.21004 0.92205 0.99072 0.96808 1.21908 1.02753 0.92560 0.98626 1.21967 0.79305 0.99368 1.01357 1.48203 1.07931 1.51648 1.26081 1.20586 0.86369 0.78948 0.84083 1.90662 1.15645 1.62124 1.74455 1.21709 0.98966 1.00823 0.95636 1.22475 0.97263 0.97975 0.94654 0.88914 1.23356 0.99678 0.97831 0.98316 1.23333 0.96438 0.97773 0.84985 1.88395 1.85659 1.39551 1.17332 1.23186 1.00617 0.85539 0.92133 1.21634 1.00029 0.92678 0.86677 1.22061 0.97915 0.94880 1.02169 0.92766 0.96704 0.97032 0.91725 0.92338 0.89109 0.91272 0.90301 0.88202 0.88587 0.89672 0.90055 0.89869 0.92250 0.91702 0.90398 0.91740 0.89607 0.91135 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 2 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 3 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -13.82 8.94 -34.44 -0.31 -14.13 16 8 H 0.07 2.08 7.30 -52.49 -0.38 1.70 16 9 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 11 C -0.12 -1.92 5.19 -26.61 -0.14 -2.06 16 12 C 0.10 1.26 6.34 -3.71 -0.02 1.24 16 13 N -0.61 -8.07 2.97 -172.76 -0.51 -8.58 16 14 C 0.51 6.76 7.49 -10.99 -0.08 6.68 16 15 O -0.55 -8.85 14.31 5.56 0.08 -8.77 16 16 C -0.13 -1.26 3.44 -27.88 -0.10 -1.35 16 17 C -0.10 -1.01 2.59 -88.68 -0.23 -1.24 16 18 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 19 C -0.15 -1.15 6.62 -24.48 -0.16 -1.31 16 20 C 0.05 0.43 7.78 38.18 0.30 0.73 16 21 O -0.39 -4.64 11.36 -35.23 -0.40 -5.04 16 22 C 0.06 0.70 6.38 37.88 0.24 0.94 16 23 C 0.11 1.55 6.43 -3.71 -0.02 1.53 16 24 C -0.13 -2.03 5.36 -26.61 -0.14 -2.17 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.61 6.91 -51.93 -0.36 1.25 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.77 5.93 -51.93 -0.31 0.46 16 33 H 0.10 0.83 7.70 -51.93 -0.40 0.43 16 34 H 0.10 0.78 7.87 -51.93 -0.41 0.37 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.73 7.76 -51.93 -0.40 0.33 16 40 H 0.08 1.00 7.73 -51.93 -0.40 0.59 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -31.41 339.13 -8.27 -39.68 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -7.60 Total: -1.54 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -1.05 Total: -11.17 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.26 Total: -34.85 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.32 Total: -13.81 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.41 -8.27 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401336312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.769 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds