Wall clock time and date at job start Tue Mar 31 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47200 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47132 * 300.00100 * 3 2 1 6 6 H 1.48496 * 109.46914 * 59.99924 * 3 2 1 7 7 C 1.37877 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99659 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00507 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46273 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.31261 * 181.38667 * 10 9 7 12 12 N 1.46926 * 108.77451 * 305.36750 * 11 10 9 13 13 C 1.34780 * 120.62707 * 233.58792 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 H 1.09005 * 110.43932 * 305.70172 * 17 16 15 19 19 C 1.54806 * 110.49244 * 183.15344 * 17 16 15 20 20 C 1.55222 * 101.99262 * 220.51859 * 19 17 16 21 21 O 1.44379 * 103.56402 * 36.88361 * 20 19 17 22 22 C 1.43742 * 106.97332 * 320.01051 * 21 20 19 23 23 C 1.46921 * 118.74177 * 53.86188 * 12 11 10 24 24 C 1.53041 * 109.45892 * 300.07478 * 9 7 2 25 25 H 0.97002 * 119.99869 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.44489 * 60.03415 * 9 7 2 27 27 H 1.09002 * 109.49670 * 61.43612 * 10 9 7 28 28 H 1.09002 * 109.52529 * 301.35819 * 10 9 7 29 29 H 1.09003 * 109.58572 * 185.57865 * 11 10 9 30 30 H 1.08997 * 109.58641 * 65.15588 * 11 10 9 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 34 34 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 35 35 H 1.08999 * 110.90961 * 338.64307 * 19 17 16 36 36 H 1.09000 * 110.90701 * 102.24332 * 19 17 16 37 37 H 1.08997 * 110.52135 * 278.38716 * 20 19 17 38 38 H 1.09004 * 110.77955 * 155.50028 * 20 19 17 39 39 H 1.09004 * 109.88221 * 267.08729 * 22 21 20 40 40 H 1.08999 * 109.88153 * 145.93833 * 22 21 20 41 41 H 1.08998 * 109.58542 * 65.92391 * 23 12 11 42 42 H 1.08999 * 109.58977 * 186.35239 * 23 12 11 43 43 H 1.08999 * 109.49703 * 298.55915 * 24 9 7 44 44 H 1.08993 * 109.50252 * 58.62409 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2457 -3.6623 -0.0005 11 6 1.4767 -4.9867 -0.0355 12 7 0.5222 -5.0089 1.0813 13 6 0.5113 -6.0352 1.9549 14 8 1.2939 -6.9522 1.8230 15 6 -0.4742 -6.0437 3.0949 16 6 -0.2771 -7.3105 3.9300 17 6 -1.2772 -7.3189 5.0878 18 1 -1.1966 -6.3991 5.6671 19 6 -1.0461 -8.5522 5.9945 20 6 -2.4993 -8.9944 6.3140 21 8 -3.2083 -8.7433 5.0817 22 6 -2.7133 -7.4992 4.5588 23 6 -0.4242 -3.8942 1.2241 24 6 0.3704 -2.5795 1.2485 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5566 -0.8907 27 1 2.8556 -3.6194 0.9019 28 1 2.8888 -3.5917 -0.8778 29 1 2.1751 -5.8176 0.0641 30 1 0.9373 -5.0712 -0.9789 31 1 -0.3128 -5.1664 3.7214 32 1 -1.4892 -6.0250 2.6980 33 1 -0.4388 -8.1876 3.3034 34 1 0.7378 -7.3298 4.3270 35 1 -0.5107 -9.3351 5.4574 36 1 -0.5138 -8.2723 6.9036 37 1 -2.9123 -8.3932 7.1239 38 1 -2.5341 -10.0540 6.5678 39 1 -3.3408 -6.6768 4.9023 40 1 -2.7055 -7.5319 3.4693 41 1 -1.1154 -3.8914 0.3813 42 1 -0.9803 -4.0039 2.1551 43 1 0.9982 -2.5471 2.1390 44 1 -0.3217 -1.7375 1.2605 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401393789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:27 Heat of formation + Delta-G solvation = -106.467250 kcal Electronic energy + Delta-G solvation = -22497.528037 eV Core-core repulsion = 19220.669972 eV Total energy + Delta-G solvation = -3276.858065 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00416 -39.35828 -36.88111 -34.56497 -33.52970 -31.62369 -30.79045 -30.04678 -28.61268 -26.28273 -24.62800 -23.03300 -22.53132 -22.00791 -20.47866 -19.67811 -18.22986 -17.08915 -16.82300 -16.29760 -15.92585 -15.35412 -15.29731 -15.05293 -14.57455 -13.96420 -13.48605 -13.40790 -13.14518 -12.93875 -12.80048 -12.67835 -12.31407 -12.00686 -11.75233 -11.67262 -11.50596 -11.32038 -11.06366 -10.97682 -10.90886 -10.68181 -10.63137 -10.40633 -10.13732 -9.84498 -9.69729 -9.38632 -9.19709 -8.94662 -8.41702 -8.01044 -6.06719 -4.12726 2.98702 3.24626 3.33374 3.37460 3.46233 3.74371 4.29386 4.38045 4.47554 4.67181 4.86271 4.94464 5.00227 5.14026 5.19279 5.23058 5.42758 5.43236 5.49240 5.54394 5.60952 5.66251 5.75717 5.81069 5.85479 5.94750 6.05474 6.09263 6.13961 6.20884 6.25087 6.43467 6.63442 6.66334 6.87270 7.00888 7.11737 7.24578 7.63307 7.88261 7.92620 8.00471 8.36789 8.56399 8.90986 9.52612 10.98775 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.003309 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.285547 B = 8458.472369 C = 8961.941145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.601 5.601 13 C 0.509 3.491 14 O -0.561 6.561 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.124 4.124 18 H 0.085 0.915 19 C -0.151 4.151 20 C 0.045 3.955 21 O -0.380 6.380 22 C 0.047 3.953 23 C 0.102 3.898 24 C -0.124 4.124 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 -12.693 10.151 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.298 3.702 14 O -0.441 6.441 15 C -0.182 4.182 16 C -0.130 4.130 17 C -0.143 4.143 18 H 0.103 0.897 19 C -0.189 4.189 20 C -0.031 4.031 21 O -0.299 6.299 22 C -0.029 4.029 23 C -0.020 4.020 24 C -0.162 4.162 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.058 0.942 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.083 -13.157 9.965 17.270 hybrid contribution 0.555 1.365 0.090 1.476 sum -4.529 -11.792 10.055 16.145 Atomic orbital electron populations 1.69846 1.05834 1.26362 1.51058 1.24964 0.94885 0.99079 0.95086 0.86558 0.80194 0.83819 0.77573 1.19843 1.21039 1.21053 1.21248 0.92993 0.90562 1.50111 0.92665 1.18639 0.92664 0.91753 0.93997 1.22003 0.98901 0.94265 1.00943 1.21684 0.91816 0.99657 0.87961 1.48276 1.35813 1.21247 1.27993 1.20578 0.84684 0.81721 0.83242 1.90633 1.42021 1.36364 1.75119 1.21740 0.99584 1.00422 0.96409 1.21367 0.99124 0.97358 0.95178 1.22625 0.95335 0.99217 0.97122 0.89674 1.23238 0.97565 0.97972 1.00077 1.23583 0.90613 1.01395 0.87548 1.88870 1.63019 1.40101 1.37951 1.23352 0.93190 0.86668 0.99713 1.22147 0.91557 0.87617 1.00707 1.22096 0.99983 0.94579 0.99561 0.93031 0.95456 0.93021 0.92188 0.90409 0.92303 0.88822 0.89162 0.90877 0.90827 0.90141 0.90160 0.92335 0.89143 0.92278 0.89506 0.91907 0.91393 0.94248 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 11.31 55.43 0.63 -23.46 16 2 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 2.03 6.43 -3.71 -0.02 2.01 16 12 N -0.60 -10.57 2.97 -172.50 -0.51 -11.09 16 13 C 0.51 8.57 7.70 -10.98 -0.08 8.48 16 14 O -0.56 -11.06 15.40 5.56 0.09 -10.97 16 15 C -0.14 -1.74 3.89 -27.88 -0.11 -1.85 16 16 C -0.09 -1.05 3.70 -26.74 -0.10 -1.15 16 17 C -0.12 -1.14 3.06 -89.10 -0.27 -1.41 16 18 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 19 C -0.15 -1.24 6.73 -24.60 -0.17 -1.41 16 20 C 0.05 0.38 7.72 38.33 0.30 0.68 16 21 O -0.38 -4.35 11.52 -35.23 -0.41 -4.76 16 22 C 0.05 0.47 6.94 37.73 0.26 0.73 16 23 C 0.10 1.75 6.37 -3.49 -0.02 1.72 16 24 C -0.12 -2.65 5.17 -26.38 -0.14 -2.79 16 25 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.07 7.70 -51.93 -0.40 0.67 16 32 H 0.09 0.97 6.78 -51.93 -0.35 0.62 16 33 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.86 6.82 -51.93 -0.35 0.51 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.96 5.93 -51.93 -0.31 0.66 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -29.53 340.93 -8.70 -38.23 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.53 Total: 0.24 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.07 Total: -8.94 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.12 Total: -34.54 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.32 Total: -15.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.53 -8.70 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401393789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.239 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds