Wall clock time and date at job start Tue Mar 31 2020 06:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48504 * 109.47058 * 269.99663 * 3 2 1 5 5 H 1.48499 * 109.47340 * 29.99526 * 3 2 1 6 6 H 1.48501 * 109.47523 * 149.99389 * 3 2 1 7 7 C 1.37877 * 120.00363 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00561 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99346 * 0.02562 * 7 2 1 10 10 C 1.53042 * 109.45884 * 179.97438 * 9 7 2 11 11 C 1.53186 * 109.31534 * 178.61293 * 10 9 7 12 12 N 1.46926 * 108.77396 * 54.63265 * 11 10 9 13 13 C 1.34780 * 120.62707 * 126.37270 * 12 11 10 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 11 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 13 18 18 H 1.08999 * 110.45808 * 54.29808 * 17 16 15 19 19 C 1.54510 * 110.51728 * 176.90226 * 17 16 15 20 20 C 1.54479 * 104.06297 * 118.64575 * 19 17 16 21 21 O 1.44420 * 104.80194 * 23.98062 * 20 19 17 22 22 C 1.44646 * 105.37123 * 319.56431 * 21 20 19 23 23 C 1.46921 * 118.74177 * 306.64666 * 12 11 10 24 24 C 1.52760 * 109.00903 * 53.30762 * 23 12 11 25 25 H 0.97006 * 120.00235 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.45100 * 299.95774 * 9 7 2 27 27 H 1.09008 * 109.49904 * 58.65884 * 10 9 7 28 28 H 1.09000 * 109.52420 * 298.58387 * 10 9 7 29 29 H 1.09005 * 109.58747 * 294.84888 * 11 10 9 30 30 H 1.09001 * 109.70993 * 174.49512 * 11 10 9 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 34 34 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 35 35 H 1.08998 * 110.51409 * 237.29242 * 19 17 16 36 36 H 1.08998 * 110.50480 * 359.86703 * 19 17 16 37 37 H 1.09000 * 110.37447 * 142.81500 * 20 19 17 38 38 H 1.09004 * 110.37198 * 265.15310 * 20 19 17 39 39 H 1.08992 * 110.34242 * 281.59140 * 22 21 20 40 40 H 1.09007 * 110.50179 * 159.18476 * 22 21 20 41 41 H 1.08996 * 109.58649 * 173.14582 * 23 12 11 42 42 H 1.09004 * 109.58204 * 293.57028 * 23 12 11 43 43 H 1.09000 * 109.56394 * 185.56047 * 24 23 12 44 44 H 1.08995 * 109.36180 * 65.49907 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2456 -3.6622 0.0005 11 6 1.4766 -4.9866 0.0355 12 7 0.5222 -5.0088 -1.0813 13 6 0.5118 -6.0347 -1.9553 14 8 1.2956 -6.9509 -1.8244 15 6 -0.4729 -6.0428 -3.0961 16 6 -0.2744 -7.3085 -3.9323 17 6 -1.2745 -7.3170 -5.0900 18 1 -1.1954 -6.3967 -5.6686 19 6 -1.0440 -8.5474 -5.9958 20 6 -2.3710 -9.3332 -5.9065 21 8 -3.3601 -8.3466 -5.5404 22 6 -2.7140 -7.5013 -4.5605 23 6 -0.4166 -3.8886 -1.2307 24 6 0.3699 -2.5792 -1.2483 25 1 -0.4851 0.8401 -0.0004 26 1 0.6246 -2.5566 0.8908 27 1 2.8883 -3.5913 0.8782 28 1 2.8559 -3.6196 -0.9016 29 1 0.9372 -5.0711 0.9790 30 1 2.1735 -5.8190 -0.0627 31 1 -1.4882 -6.0242 -2.6997 32 1 -0.3112 -5.1652 -3.7220 33 1 0.7408 -7.3266 -4.3286 34 1 -0.4359 -8.1864 -3.3067 35 1 -0.8531 -8.2354 -7.0226 36 1 -0.2159 -9.1483 -5.6200 37 1 -2.6157 -9.7756 -6.8722 38 1 -2.3038 -10.1056 -5.1404 39 1 -2.7003 -7.9916 -3.5872 40 1 -3.2201 -6.5381 -4.4940 41 1 -0.9670 -3.9953 -2.1654 42 1 -1.1136 -3.8818 -0.3926 43 1 -0.3226 -1.7375 -1.2594 44 1 0.9974 -2.5465 -2.1389 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401393791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:31 Heat of formation + Delta-G solvation = -106.937131 kcal Electronic energy + Delta-G solvation = -22498.284006 eV Core-core repulsion = 19221.405565 eV Total energy + Delta-G solvation = -3276.878441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.00275 -39.35934 -36.90969 -34.57568 -33.53396 -31.61900 -30.75354 -30.08778 -28.62387 -26.29151 -24.56135 -23.09839 -22.58992 -22.03788 -20.43970 -19.74847 -18.23741 -16.98698 -16.64340 -16.21985 -15.87291 -15.58778 -15.31535 -15.06968 -14.57427 -14.12900 -13.46807 -13.32842 -13.16064 -12.88861 -12.84216 -12.71015 -12.31980 -12.08101 -11.77006 -11.61573 -11.53174 -11.32759 -11.03103 -10.95515 -10.83531 -10.67047 -10.63508 -10.40769 -10.13576 -9.99091 -9.69771 -9.39469 -9.20408 -8.95450 -8.41651 -8.02557 -6.06681 -4.12770 2.97259 3.25796 3.33113 3.36454 3.44792 3.77373 4.33669 4.38045 4.51297 4.64822 4.84752 4.90507 5.03841 5.15316 5.19567 5.23006 5.37589 5.48042 5.49745 5.55022 5.60114 5.68338 5.75613 5.78905 5.81614 5.93761 6.04429 6.07770 6.13092 6.19778 6.27911 6.42926 6.57247 6.62807 6.86535 7.00491 7.11106 7.23749 7.62833 7.87935 7.91680 8.00225 8.36607 8.54977 8.90636 9.52545 10.98834 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.003316 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.857336 B = 8442.581383 C = 8974.844813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.601 5.601 13 C 0.510 3.490 14 O -0.562 6.562 15 C -0.141 4.141 16 C -0.093 4.093 17 C -0.123 4.123 18 H 0.085 0.915 19 C -0.152 4.152 20 C 0.044 3.956 21 O -0.380 6.380 22 C 0.046 3.954 23 C 0.103 3.897 24 C -0.125 4.125 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -13.601 -8.888 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.333 5.333 13 C 0.298 3.702 14 O -0.442 6.442 15 C -0.181 4.181 16 C -0.131 4.131 17 C -0.142 4.142 18 H 0.104 0.896 19 C -0.190 4.190 20 C -0.033 4.033 21 O -0.298 6.298 22 C -0.030 4.030 23 C -0.019 4.019 24 C -0.164 4.164 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.852 -13.917 -8.875 17.204 hybrid contribution 0.653 1.152 0.103 1.328 sum -4.199 -12.765 -8.772 16.047 Atomic orbital electron populations 1.69827 1.05842 1.26490 1.50939 1.24955 0.94882 0.99065 0.95063 0.86614 0.79922 0.83494 0.78093 1.20731 1.21231 1.19967 1.21208 0.92955 0.90574 1.50279 0.92717 1.18632 0.92645 0.91738 0.93969 1.22003 0.98914 0.94254 1.00954 1.21684 0.91825 0.99650 0.87970 1.48279 1.36096 1.21007 1.27913 1.20584 0.84677 0.81758 0.83196 1.90630 1.41954 1.36501 1.75125 1.21720 0.99579 1.00458 0.96353 1.21387 0.99203 0.97308 0.95168 1.22607 0.95377 0.99331 0.96891 0.89634 1.23003 0.98513 0.96803 1.00630 1.23403 0.87532 0.91728 1.00599 1.89138 1.36769 1.43953 1.59987 1.23634 0.91967 0.95335 0.92096 1.21964 0.91719 0.87525 1.00711 1.21952 1.00134 0.94684 0.99606 0.92959 0.95459 0.92180 0.93015 0.92310 0.90418 0.89174 0.88771 0.90772 0.91071 0.90679 0.90147 0.89318 0.92339 0.91947 0.88890 0.91394 0.91950 0.87692 0.94301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 11.30 55.43 0.63 -23.45 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.51 -13.48 8.56 -34.44 -0.29 -13.78 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.14 2.07 -91.73 -0.19 0.95 16 10 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 11 C 0.11 2.02 6.44 -3.71 -0.02 1.99 16 12 N -0.60 -10.49 2.98 -173.03 -0.52 -11.00 16 13 C 0.51 8.46 7.70 -10.98 -0.08 8.38 16 14 O -0.56 -10.91 15.39 5.56 0.09 -10.83 16 15 C -0.14 -1.71 3.91 -27.88 -0.11 -1.82 16 16 C -0.09 -1.02 3.71 -26.74 -0.10 -1.12 16 17 C -0.12 -1.14 3.13 -89.06 -0.28 -1.42 16 18 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.15 -1.26 6.74 -25.16 -0.17 -1.43 16 20 C 0.04 0.38 7.64 37.93 0.29 0.67 16 21 O -0.38 -4.28 11.65 -35.23 -0.41 -4.70 16 22 C 0.05 0.45 6.43 37.93 0.24 0.69 16 23 C 0.10 1.76 6.31 -3.94 -0.02 1.73 16 24 C -0.13 -2.68 5.14 -26.83 -0.14 -2.82 16 25 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 31 H 0.09 0.94 7.36 -51.93 -0.38 0.56 16 32 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 33 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.59 7.78 -51.93 -0.40 0.18 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.96 5.93 -51.93 -0.31 0.65 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.11 2.50 6.03 -51.93 -0.31 2.19 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -29.37 341.76 -8.80 -38.17 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -7.60 Total: 0.13 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.11 Total: -9.09 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.11 Total: -34.46 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.33 Total: -15.52 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.37 -8.80 -38.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401393791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.771 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds