Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99803 * 2 1 4 4 H 1.48503 * 109.46809 * 240.00414 * 3 2 1 5 5 H 1.48501 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47348 * 120.00307 * 3 2 1 7 7 C 1.37876 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 172.90792 * 7 2 1 9 9 C 1.50696 * 120.00190 * 352.91888 * 7 2 1 10 10 C 1.53001 * 115.55054 * 84.52954 * 9 7 2 11 11 N 1.46501 * 109.47314 * 39.67906 * 10 9 7 12 12 C 1.34774 * 120.00255 * 181.04312 * 11 10 9 13 13 O 1.21280 * 119.99845 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99823 * 180.27935 * 12 11 10 15 15 C 1.53009 * 109.46915 * 179.72488 * 14 12 11 16 16 C 1.52995 * 109.47116 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47951 * 305.02407 * 16 15 14 18 18 C 1.53088 * 109.48314 * 185.00153 * 16 15 14 19 19 C 1.53177 * 109.16618 * 182.40871 * 18 16 15 20 20 C 1.53172 * 109.03633 * 56.98093 * 19 18 16 21 21 C 1.53098 * 109.16303 * 303.01746 * 20 19 18 22 22 O 1.42895 * 109.48169 * 65.05633 * 16 15 14 23 23 C 1.53000 * 117.52026 * 230.23459 * 9 7 2 24 24 C 1.53001 * 117.49679 * 298.86379 * 9 7 2 25 25 H 0.97004 * 120.00389 * 5.02721 * 1 2 3 26 26 H 1.09006 * 109.46782 * 279.68426 * 10 9 7 27 27 H 1.08996 * 109.47076 * 159.68323 * 10 9 7 28 28 H 0.97007 * 119.99831 * 1.05129 * 11 10 9 29 29 H 1.08999 * 109.47300 * 299.72052 * 14 12 11 30 30 H 1.08995 * 109.47593 * 59.72734 * 14 12 11 31 31 H 1.08999 * 109.46781 * 299.99882 * 15 14 12 32 32 H 1.09004 * 109.46754 * 60.00060 * 15 14 12 33 33 H 1.09004 * 109.52247 * 302.31447 * 18 16 15 34 34 H 1.09003 * 109.52208 * 62.43331 * 18 16 15 35 35 H 1.08998 * 109.54073 * 176.84998 * 19 18 16 36 36 H 1.08995 * 109.54185 * 297.02025 * 19 18 16 37 37 H 1.08992 * 109.52411 * 62.92346 * 20 19 18 38 38 H 1.09002 * 109.52226 * 183.05278 * 20 19 18 39 39 H 1.08994 * 109.47989 * 177.59578 * 21 20 19 40 40 H 1.09006 * 109.47900 * 297.61768 * 21 20 19 41 41 H 1.08997 * 117.50103 * 214.97162 * 23 9 7 42 42 H 1.08997 * 117.49273 * 359.97438 * 23 9 7 43 43 H 1.09002 * 117.49841 * 359.96961 * 24 9 7 44 44 H 1.09000 * 117.49851 * 144.97250 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0784 -1.1975 -0.1149 9 6 1.2598 -2.4941 0.1620 10 6 0.6734 -3.0827 -1.1228 11 7 1.6222 -2.8953 -2.2232 12 6 1.3082 -3.3193 -3.4634 13 8 0.2399 -3.8555 -3.6685 14 6 2.2868 -3.1323 -4.5940 15 6 1.6918 -3.7025 -5.8831 16 6 2.6856 -3.5132 -7.0309 17 1 2.9578 -2.4604 -7.1061 18 6 2.0428 -3.9693 -8.3433 19 6 3.0637 -3.8333 -9.4772 20 6 4.3115 -4.6495 -9.1266 21 6 4.8667 -4.1670 -7.7839 22 8 3.8572 -4.2918 -6.7801 23 6 1.7706 -3.4748 1.2194 24 6 0.4723 -2.7009 1.4574 25 1 -0.4851 0.8368 -0.0736 26 1 -0.2625 -2.5768 -1.3600 27 1 0.4857 -4.1471 -0.9821 28 1 2.4766 -2.4662 -2.0592 29 1 2.4899 -2.0696 -4.7267 30 1 3.2153 -3.6533 -4.3609 31 1 1.4887 -4.7652 -5.7505 32 1 0.7632 -3.1814 -6.1163 33 1 1.7334 -5.0108 -8.2547 34 1 1.1733 -3.3481 -8.5582 35 1 2.6309 -4.2088 -10.4044 36 1 3.3348 -2.7847 -9.5998 37 1 4.0480 -5.7046 -9.0538 38 1 5.0648 -4.5149 -9.9028 39 1 5.7300 -4.7729 -7.5087 40 1 5.1678 -3.1229 -7.8691 41 1 1.6890 -4.5393 0.9998 42 1 2.6458 -3.1799 1.7983 43 1 0.4934 -1.8968 2.1930 44 1 -0.4636 -3.2560 1.3942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404096159.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -90.016111 kcal Electronic energy + Delta-G solvation = -22173.129819 eV Core-core repulsion = 18896.985128 eV Total energy + Delta-G solvation = -3276.144690 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.66883 -38.78593 -36.66149 -33.88125 -33.70596 -33.10225 -32.01738 -30.15313 -26.77938 -25.60057 -24.87253 -23.74933 -21.52246 -21.12632 -20.45555 -19.57881 -19.04764 -16.65626 -16.56626 -16.18835 -15.70956 -15.02612 -14.90110 -14.71728 -14.61246 -14.54660 -13.81570 -13.65485 -13.19808 -12.89809 -12.76149 -12.57739 -12.02504 -11.87279 -11.74068 -11.59398 -11.31692 -11.21328 -11.02520 -10.93738 -10.82842 -10.76121 -10.55832 -10.34875 -10.22503 -9.63942 -9.53886 -9.14318 -8.90459 -8.51858 -8.28985 -7.87002 -6.10451 -4.19974 3.23842 3.30791 3.32080 3.41000 3.68866 4.04366 4.32417 4.58160 4.60428 4.66602 4.77948 5.03286 5.12844 5.19264 5.25510 5.26778 5.32373 5.45579 5.50660 5.56132 5.59827 5.71864 5.76448 5.82352 5.94899 6.00141 6.06461 6.09794 6.25070 6.34036 6.41378 6.51932 6.60258 6.74373 6.95769 7.10992 7.17528 7.34346 7.41965 7.54754 7.77994 8.33233 8.51707 8.81900 9.08858 9.47271 10.97211 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020717 B = 0.003551 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.197228 B = 7883.577368 C = 8458.888672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.077 3.923 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.029 3.971 10 C 0.164 3.836 11 N -0.696 5.696 12 C 0.501 3.499 13 O -0.568 6.568 14 C -0.138 4.138 15 C -0.093 4.093 16 C 0.089 3.911 17 H 0.058 0.942 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.376 6.376 23 C -0.211 4.211 24 C -0.153 4.153 25 H 0.262 0.738 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.404 0.596 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -5.808 -15.502 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.041 3.959 11 N -0.345 5.345 12 C 0.287 3.713 13 O -0.448 6.448 14 C -0.178 4.178 15 C -0.130 4.130 16 C 0.032 3.968 17 H 0.076 0.924 18 C -0.189 4.189 19 C -0.160 4.160 20 C -0.194 4.194 21 C -0.017 4.017 22 O -0.295 6.295 23 C -0.248 4.248 24 C -0.191 4.191 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.240 0.760 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.843 -6.161 -15.382 17.928 hybrid contribution 0.785 1.402 -0.135 1.613 sum 7.629 -4.759 -15.517 17.934 Atomic orbital electron populations 1.69973 1.05950 1.27042 1.47563 1.24986 0.94748 0.98886 0.94137 0.86713 0.79677 0.83208 0.78708 1.20187 1.21293 1.20149 1.20268 0.92910 0.88659 1.52504 0.92140 1.19030 0.98200 0.93926 0.86023 1.20829 0.92158 0.96648 0.86302 1.45989 1.21684 1.59046 1.07794 1.20571 0.87773 0.78736 0.84196 1.90623 1.25238 1.44951 1.84033 1.21593 0.99403 1.02973 0.93798 1.21334 0.96806 1.03149 0.91749 1.22203 0.85883 0.94307 0.94424 0.92382 1.22206 0.98698 1.02964 0.94994 1.21588 0.95786 1.00245 0.98417 1.22193 0.98157 1.00967 0.98133 1.22533 0.90929 1.00405 0.87815 1.87972 1.26735 1.68839 1.45931 1.23081 0.98344 0.95673 1.07717 1.22496 0.92554 1.01189 1.02863 0.92769 0.91606 0.94719 0.75971 0.89461 0.88702 0.90461 0.89867 0.90907 0.90750 0.91639 0.91905 0.91098 0.91178 0.89048 0.93354 0.91604 0.90418 0.89957 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 12.97 55.43 0.72 -23.23 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.51 -12.81 7.43 -34.44 -0.26 -13.07 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.68 1.71 -155.66 -0.27 0.42 16 10 C 0.16 3.81 5.75 -4.04 -0.02 3.79 16 11 N -0.70 -14.40 5.33 -60.29 -0.32 -14.72 16 12 C 0.50 9.85 7.83 -10.99 -0.09 9.77 16 13 O -0.57 -13.00 15.98 5.56 0.09 -12.91 16 14 C -0.14 -2.05 5.60 -27.88 -0.16 -2.20 16 15 C -0.09 -1.26 4.21 -26.73 -0.11 -1.38 16 16 C 0.09 1.02 2.64 -26.69 -0.07 0.94 16 17 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 18 C -0.15 -1.46 5.42 -26.59 -0.14 -1.60 16 19 C -0.12 -0.99 6.03 -26.55 -0.16 -1.15 16 20 C -0.16 -1.23 6.14 -26.59 -0.16 -1.40 16 21 C 0.06 0.55 6.84 37.21 0.25 0.80 16 22 O -0.38 -4.57 9.94 -35.23 -0.35 -4.92 16 23 C -0.21 -4.48 9.88 -26.73 -0.26 -4.74 16 24 C -0.15 -3.53 9.51 -26.73 -0.25 -3.78 16 25 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 26 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 27 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 28 H 0.40 7.92 7.45 -40.82 -0.30 7.61 16 29 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.32 7.82 -51.93 -0.41 0.91 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 43 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -29.41 357.11 -9.15 -38.56 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.85 Total: 8.39 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.80 Total: -11.69 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.40 Total: -37.96 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.26 Total: -17.83 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.41 -9.15 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404096159.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.453 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds