Wall clock time and date at job start Tue Mar 31 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00087 * 2 1 4 4 H 1.48496 * 109.47443 * 270.00310 * 3 2 1 5 5 H 1.48499 * 109.47221 * 30.00579 * 3 2 1 6 6 H 1.48503 * 109.47375 * 150.00136 * 3 2 1 7 7 C 1.37884 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99707 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47039 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47039 * 179.97438 * 10 9 7 12 12 O 1.21290 * 120.00085 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00032 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63126 * 179.97438 * 13 11 10 15 15 C 1.53183 * 108.77467 * 233.62684 * 14 13 11 16 16 C 1.53040 * 109.31381 * 305.36389 * 15 14 13 17 17 C 1.53000 * 109.45994 * 181.38458 * 16 15 14 18 18 H 1.09003 * 110.55592 * 302.85436 * 17 16 15 19 19 C 1.54994 * 110.62123 * 179.97438 * 17 16 15 20 20 C 1.54807 * 102.09860 * 204.47570 * 19 17 16 21 21 C 1.54105 * 104.18504 * 20.88235 * 20 19 17 22 22 O 1.43746 * 107.42259 * 1.95340 * 21 20 19 23 23 C 1.53044 * 109.52696 * 61.37567 * 16 15 14 24 24 C 1.46925 * 120.63172 * 0.02562 * 13 11 10 25 25 H 0.96991 * 120.00215 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47037 * 60.00007 * 9 7 2 27 27 H 1.09006 * 109.47015 * 299.99949 * 9 7 2 28 28 H 1.09001 * 109.47130 * 60.00150 * 10 9 7 29 29 H 1.08997 * 109.47480 * 299.99843 * 10 9 7 30 30 H 1.09007 * 109.58465 * 113.83978 * 14 13 11 31 31 H 1.08995 * 109.58202 * 353.41607 * 14 13 11 32 32 H 1.09001 * 109.49656 * 185.41338 * 15 14 13 33 33 H 1.09001 * 109.50128 * 65.31843 * 15 14 13 34 34 H 1.09002 * 109.46278 * 301.35824 * 16 15 14 35 35 H 1.09007 * 110.90973 * 86.27428 * 19 17 16 36 36 H 1.09003 * 110.93565 * 322.69349 * 19 17 16 37 37 H 1.08996 * 110.48875 * 262.20504 * 20 19 17 38 38 H 1.09000 * 110.48902 * 139.55378 * 20 19 17 39 39 H 1.09002 * 109.88076 * 121.45430 * 21 20 19 40 40 H 1.08996 * 109.87584 * 242.45546 * 21 20 19 41 41 H 1.08995 * 109.49796 * 58.57378 * 23 16 15 42 42 H 1.08996 * 109.49620 * 178.67657 * 23 16 15 43 43 H 1.09006 * 109.58765 * 246.16016 * 24 13 11 44 44 H 1.08997 * 109.58435 * 6.57907 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0022 12 8 6.1349 -1.5862 -0.0036 13 7 6.2024 -3.8038 -0.0028 14 6 7.6716 -3.8200 -0.0046 15 6 8.1537 -4.6856 -1.1728 16 6 7.5100 -6.0707 -1.0758 17 6 8.0160 -6.9493 -2.2217 18 1 7.8048 -6.4825 -3.1838 19 6 7.3804 -8.3610 -2.1488 20 6 8.4219 -9.2250 -2.9007 21 6 9.7180 -8.3936 -2.8382 22 8 9.4317 -7.2065 -2.0798 23 6 5.9885 -5.9355 -1.1707 24 6 5.4818 -5.0842 -0.0029 25 1 -0.4850 0.8399 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6800 -0.8912 28 1 3.6578 -3.1507 -0.8907 29 1 3.6586 -3.1503 0.8892 30 1 8.0335 -4.2389 0.9344 31 1 8.0480 -2.8040 -0.1229 32 1 9.2383 -4.7847 -1.1288 33 1 7.8686 -4.2171 -2.1148 34 1 7.7752 -6.5285 -0.1228 35 1 6.4173 -8.3809 -2.6590 36 1 7.2771 -8.6887 -1.1143 37 1 8.1157 -9.3770 -3.9356 38 1 8.5581 -10.1823 -2.3975 39 1 10.5031 -8.9676 -2.3459 40 1 10.0334 -8.1227 -3.8457 41 1 5.7240 -5.4550 -2.1126 42 1 5.5319 -6.9241 -1.1252 43 1 5.6647 -5.6066 0.9362 44 1 4.4135 -4.9023 -0.1201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408234344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:18 Heat of formation + Delta-G solvation = -103.320748 kcal Electronic energy + Delta-G solvation = -22434.203138 eV Core-core repulsion = 19157.481516 eV Total energy + Delta-G solvation = -3276.721623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34141 -39.40633 -37.16443 -33.58884 -33.44712 -32.45578 -31.58890 -30.73513 -28.94710 -26.40989 -24.86312 -23.43594 -22.31260 -21.61817 -20.97026 -20.24420 -18.63276 -17.30275 -16.68899 -16.43882 -15.90065 -15.60550 -15.42730 -15.23206 -14.34930 -14.04862 -13.91807 -13.85769 -13.52398 -13.28769 -13.10514 -12.57405 -12.43009 -12.25996 -12.14723 -12.01885 -11.73715 -11.42291 -11.33742 -11.19168 -10.96297 -10.92247 -10.71448 -10.42872 -10.10320 -10.00324 -9.94043 -9.76185 -9.20042 -9.10116 -8.50581 -8.43920 -6.01857 -4.00363 3.12570 3.24853 3.39367 3.45861 3.50030 3.57427 4.17644 4.29156 4.52270 4.52542 4.60373 4.66260 4.75616 4.89594 4.95824 5.08055 5.14779 5.22344 5.33835 5.34431 5.35154 5.38351 5.42763 5.49233 5.52957 5.65924 5.71078 5.71665 5.78054 5.84356 5.96804 6.00520 6.08494 6.10795 6.21561 6.61078 6.66601 6.77851 7.38890 7.45820 7.68380 7.81438 8.51083 8.66527 9.01114 9.61498 11.10994 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036228 B = 0.003161 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.699996 B = 8854.801445 C = 9301.080712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.512 3.488 12 O -0.541 6.541 13 N -0.623 5.623 14 C 0.111 3.889 15 C -0.125 4.125 16 C -0.078 4.078 17 C 0.081 3.919 18 H 0.070 0.930 19 C -0.150 4.150 20 C -0.158 4.158 21 C 0.046 3.954 22 O -0.373 6.373 23 C -0.130 4.130 24 C 0.109 3.891 25 H 0.263 0.737 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.599 -20.695 -4.462 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.359 5.359 14 C -0.012 4.012 15 C -0.163 4.163 16 C -0.097 4.097 17 C 0.024 3.976 18 H 0.088 0.912 19 C -0.188 4.188 20 C -0.195 4.195 21 C -0.031 4.031 22 O -0.292 6.292 23 C -0.168 4.168 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 17.915 -19.862 -4.335 27.097 hybrid contribution 0.245 0.505 -0.257 0.617 sum 18.160 -19.357 -4.592 26.937 Atomic orbital electron populations 1.69907 1.06290 1.26960 1.51154 1.24969 0.94705 0.99233 0.94340 0.86797 0.80645 0.83383 0.78747 1.20253 1.21460 1.18511 1.21113 0.89281 0.94529 1.51261 0.90960 1.19378 0.96375 0.90278 0.97640 1.21680 0.88193 1.03141 1.03034 1.21543 0.91568 0.82399 0.74208 1.90639 1.70722 1.31088 1.49303 1.48272 1.06233 1.06211 1.75177 1.21501 0.80496 1.01640 0.97585 1.21909 1.00784 0.94433 0.99220 1.21153 0.95024 0.95370 0.98141 1.23243 0.80846 0.94899 0.98621 0.91209 1.23181 0.99049 0.94833 1.01695 1.22942 0.95386 0.99728 1.01476 1.23111 0.97401 0.86376 0.96197 1.88931 1.24477 1.44034 1.71790 1.21964 0.94488 1.00514 0.99873 1.21680 0.97763 0.84028 0.97923 0.92735 0.95848 0.96313 0.89722 0.89674 0.92066 0.89090 0.90351 0.91609 0.90220 0.89979 0.90263 0.90734 0.90546 0.90084 0.92578 0.91018 0.90436 0.91566 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.38 3.99 -27.88 -0.11 -2.49 16 11 C 0.51 9.72 7.70 -10.99 -0.08 9.64 16 12 O -0.54 -12.38 15.40 5.55 0.09 -12.30 16 13 N -0.62 -8.97 2.97 -172.80 -0.51 -9.48 16 14 C 0.11 1.42 6.43 -3.71 -0.02 1.39 16 15 C -0.13 -1.35 5.29 -26.62 -0.14 -1.49 16 16 C -0.08 -0.71 1.95 -90.58 -0.18 -0.89 16 17 C 0.08 0.69 2.84 -25.68 -0.07 0.62 16 18 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 19 C -0.15 -0.99 5.45 -24.73 -0.13 -1.13 16 20 C -0.16 -0.93 7.01 -25.20 -0.18 -1.10 16 21 C 0.05 0.33 7.69 37.73 0.29 0.62 16 22 O -0.37 -3.75 10.86 -35.23 -0.38 -4.13 16 23 C -0.13 -1.14 5.16 -26.64 -0.14 -1.28 16 24 C 0.11 1.18 6.34 -3.74 -0.02 1.15 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 27 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 28 H 0.08 1.54 7.69 -51.93 -0.40 1.14 16 29 H 0.08 1.55 7.94 -51.93 -0.41 1.14 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 32 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 36 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.53 7.14 -51.93 -0.37 0.16 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -34.24 341.76 -8.54 -42.79 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.67 Total: -4.36 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.32 Total: -8.46 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.26 Total: -36.83 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.30 Total: -16.42 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.24 -8.54 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408234344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.533 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds